G459346 (hdlbp)


Basic Information

Item Value
gene id G459346
gene name hdlbp
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95696263 ~ 95706519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU520422
ataattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaactacagtaTGGAACAAGTATGGTACTTTAACAGTTAGTGTGTAGGGTATTGAAACTTCTGGAGCTCTAGTGTTGCAGTAGGATGATTACAGTACAATCTCCAAAAGCATCTGGCAgtttgagagagagtgtgtgaaatAGTATATCTGTAGTGAATCACCCCTCCAAAACAAAAAAAGTTCAACAAATGAATAAGGCTGCATGATTACAACACATCACTACCTGGCCAGACACCTCACAAGCACAGTAACAAGCAGACAGGATGAAAGACTGGAGGACAGAACCACTCCGATGCAGCAATAAGACTGAGACCTGAATGAGATGACGTAACACAGTTCCacgaggagtggagggagagcaGTTGAAAACAGACAGCTGGCCACCACGGTGGTCAAGCTTCTTCACTtcaaatcaaaagctgaaaatGGTCAGACGTGCGTTAACATGTCGCCAGAGaAAGACCCATTACTGAATGCAAGAAGACACAAAGCTGAAGTTACAGGTCCAAATACAGTTTGGTTGAAAGCATTTCAGACTACACCGTAAAATCTACAAAAAGGCAAACCAAGTTATGTAGACAGAAGAGAGAAGCATGAAACATTTCCAGGACTGCAGAGACTtctgtgggggagggagggggggtcagCGGTCAGTCCAGGTCCATAGGGTTGGGGCAGGCGATGGAGGGGAAGATTGTGTCGTCAGGTGGAGGTGAGGGCCGTCTTGTCTCCTTCGTAGCAGCACAGCTCTGCTCAGAAGCGCTTGGGTCCCCAGGGAGAAGCCTTGTTGGTGGCCGCCACAGGAGCACCAAAGCTGGGGAAGTCCTCTGAACTGCTCATGTCTGgggcctggagagagaaagagagagagagaaag
>TU520413
tacaattttCAATTTTTATTGACTTTTTGGACAATTTCATTTCCAGTGTCATCCATATTTGTTTCACTTCTTCTTGTAATGGTTTTTGCATAATCTTTCATATAAGGCTAGAATGATATAGACCAGGATTAGACAATGATGTCATATCTTTCAGGAAGTGTGCATCAccggaaaaaataaaaataaaaaaatgaaccaCCCACTGCCATGAACTGAATGAGACGACTGAACATTTATCCACAGCATTGTACTGTACGCCTCCTGATCTCCTCGGGACTGTGACATCACCTCTGGGGTCTGGTTTATATCACTCTAGAGCTAAGGCTGATAAGAGGGCCATTGCTATGGTTACAGAACAATCTGCATAGCAACTGGAAGACAAAAAGGGACTGGACACTGACCCCGGGTAGGTAGCAGGATGAGTAACATCACTAGACAGAAGACAGTTCATTGGCACAGAATGGTCTGCTCTTTTGCTTCCGAAAGCCACGAGTAGAGAGTTAAAAACTTCATTTTCAAaatgtcacaaaaaaaaaaaaaaaaaaaactacagtaTGGAACAAGTATGGTACTTTAACAGTTAGTGTGTAGGGTATTGAAACTTCTGGAGCTCTAGTGTTGCAGTAGGATGATTACAGTACAATCTCCAAAAGCATCTGGCAgtttgagagagagtgtgtgaaatAGTATATCTGTAGTGAATCACCCCTCCAAAACAAAAAAAGTTCAACAAATGAATAAGGCTGCATGATTACAACACATCACTACCTGGCCAGACACCTCACAAGCACAGTAACAAGCAGACAGGATGAAAGACTGGAGGACAGAACCACTCCGATGCAGCAATAAGACTGAGACCTGAATGAGATGACGTAACACAGTTCCacgaggagtggagggagagcaGTTGAAAACAGACAGCTGGCCACCACGGTGGTCAAGCTTCTTCACTtcaaatcaaaagctgaaaatGGTCAGACGTGCGTTAACATGTCGCCAGAGaAAGACCCATTACTGAATGCAAGAAGACACAAAGCTGAAGTTACAGGTCCAAATACAGTTTGGTTGAAAGCATTTCAGACTACACCGTAAAATCTACAAAAAGGCAAACCAAGTTATGTAGACAGAAGAGAGAAGCATGAAACATTTCCAGGACTGCAGAGACTtctgtgggggagggagggggggtcagCGGTCAGTCCAGGTCCATAGGGTTGGGGCAGGCGATGGAGGGGAAGATTGTGTCGTCAGGTGGAGGTGAGGGCCGTCTTGTCTCCTTCGTAGCAGCACAGCTCTGCTCAGAAGCGCTTGGGTCCCCAGGGAGAAGCCTTGTTGGTGGCCGCCACAGGAGCACCAAAGCTGGGGAAGTCTCGCTCTCGTCCTCCCTCATCCATCGAGGACGCACCGCGGTCACCAGTGGGCTTCATGTACGTCATCTTAGATTCATTCTCATTCACGTCAGCCATTATTCCTCTTCCAGGTTGAGGAGGTGGTCGATGGCTTCGTCCACCAGCTCAGGACGACCAGTAACAAACACCTGATTGGGGTCAGCAGCTCCGGGCTGGGGGAATCTCAGATCCACCTAAAACAAAAACACAGGAAGAAAACATGGTCAGTTCATCTGGTCATTTAAAGTGGAGGTCCTATGTGATGTTCCTCCAGAAACAAAAATAGCatta
>TU520420
tttttttttgttgcaaaggACAAGTGGCTTGAGGACAGAAGAATTGACCACAGACGGTGTACCTGGTTGTCGTCGTTCTTGTCTGGGAACTGGATGTTGACGTCGTGTTCCGTGCGGATGTTGGTTATTTTGGCCCCCTTACGGCCAATGATCTTGGGGTGATACTTAGGATCCACAGTGATGGTCAACTTGAAGCTCCTGAGGGACCGATCCTCCTGCTCAGCAGTCAGCTCTTTAACGCGCTCCAGGAGACCCTCCTTAGCGCGGTCCAGGTGATTGGCCAAGCCAGTAATGGAGATTATGTCGGACTGCAGCTCAGGAGCAGGCACTTGAATATTAACCTCAAACTCATCCATCATCTTACGAATTCCACTTCCTTTCTGCCCAATGATGTAACGGTGAAGCTCAAAAGGCACTTCCACTTCAGTGGTGACAGGGACCAAAGCCTTGAGTGCCTCCACAGCAGCCTCGCATCGCTCCTTGCGGCCAGAAAGCACGATGACGTCACACTTCTTCGGTGCAGTGGGATCCACAGGTGCTGCCGGCTCTTCAACCATCTCCCCGTTAGCCTCTCCATTCTCCTGCACTGCAGCCTCGGCTGCCTCCACGCAGTCTTTGGCTCCCTTCAGAGTGACCTTGTCGCTGTTGGCGCCGCTCCTGGGGAAGCTCACCATCACGCCGCCGTACTCGTCAGCGATGTCCCTCAGCACCTGCCCACGGCGAGCCACAAAGTACCGGTGGTGCTTGGGGTCCACATTCATTACATCCTCCACCACGTTATCCTGAGGGATGACAAGCAAGCACGGGGTTTAAAATATTCAAAATGTGTCAAACTAAAACACAG

Function

symbol description
hdlbp Enables RNA binding activity and cadherin binding activity. Predicted to be involved in cholesterol metabolic process and lipid transport. Located in cytosol.

NR:

description
PREDICTED: vigilin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU520422 False 917 lncRNA 0.46 3 95696263 95701115
TU520413 False 1679 lncRNA 0.45 4 95699436 95702180
TU520420 True 844 TUCP 0.53 5 95702980 95706519

Neighbor

gene id symbol gene type direction distance location
LOC118964737 NA coding upstream 49153 95638743 ~ 95647110 (+)
dzip1l LOC106560612 coding upstream 586310 95079374 ~ 95109953 (+)
LOC110524884 kat3 coding upstream 1460775 94221038 ~ 94235488 (+)
LOC110523054 LOC106592820 coding upstream 1494922 94191647 ~ 94201341 (+)
LOC118964736 NA coding upstream 1511154 94181264 ~ 94185109 (+)
LOC110524871 LOC106560642 coding downstream 33148 95735328 ~ 95776796 (+)
farp2 farp2 coding downstream 74768 95776948 ~ 95873366 (+)
boka LOC106560644 coding downstream 176184 95878364 ~ 95890053 (+)
atg4b atg4b coding downstream 192763 95894943 ~ 95913833 (+)
kif1aa kif1a coding downstream 263993 95966173 ~ 96115469 (+)
G459373 NA non-coding upstream 3141 95692825 ~ 95693122 (+)
G459368 NA non-coding upstream 16094 95679960 ~ 95680169 (+)
G459367 NA non-coding upstream 17767 95678284 ~ 95678496 (+)
G459365 NA non-coding upstream 19610 95676419 ~ 95676653 (+)
G459362 NA non-coding upstream 22435 95673582 ~ 95673828 (+)
G459390 NA non-coding downstream 39668 95741848 ~ 95742371 (+)
G459392 NA non-coding downstream 41831 95744011 ~ 95744327 (+)
G459399 NA non-coding downstream 68762 95770942 ~ 95772559 (+)
G459411 NA non-coding downstream 99323 95801503 ~ 95802067 (+)
G459386 NA non-coding downstream 128093 95830273 ~ 95833270 (+)
G458015 NA other upstream 1559994 94135918 ~ 94136269 (+)
LOC110524846 LOC106560502 other upstream 1951268 93722660 ~ 93780941 (+)
G456927 NA other upstream 2346644 93348794 ~ 93349619 (+)
LOC110524836 rpl36 other upstream 2471172 93221830 ~ 93225091 (+)
G456731 cp other upstream 2654801 93002003 ~ 93041462 (+)
G459346 hdlbp other downstream 800 95696263 ~ 95706519 (+)
G459843 NA other downstream 545106 96247286 ~ 96247962 (+)
ryk LOC106560633 other downstream 772894 96474920 ~ 96619822 (+)
G460428 NA other downstream 1220152 96922332 ~ 96922812 (+)
G461121 jade3 other downstream 2112187 97812808 ~ 97815973 (+)
G461826 NA other downstream 2967737 98674256 ~ 98677063 (+)

Expression


Co-expression Network