XLOC_023720


Basic Information

Item Value
gene id XLOC_023720
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 41334066 ~ 41334636 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047273
TTGCGGTGGGCAGTGACGCAGAGTCTGAGACTTTCCTCGTAATTTATCACTCAAAATCGCTTCATTCGGAGGAACGGATTTAGTATTAATTCTTACACCAGTCTTCAGCACGTAGACGCGCAATACCGGCTCAAATCCATGTGATTTCGCTGTTTTTTTGGTGTGGATTTGTGGTACATGTGGATGTTGATGCGGTAGGGAGTAAATAAAGATGCCGCAGCCGAAATCGCGAAAGATCGCCGTCCTGGGCTACAGATCCGTCGTGTTCGCGCTGTCCTGCAGATGCGCACAGGCCTCAGCCTCTCTGTCTTCATGCATGTGCTGTGTTTCATGTGTTTACTTCATGCTTTTGCtctatttttgtgtttaattcaTGCATTTGCAGTGTTTGGTGGTTTTATTCCCTCATGCATGCACTGGTCAGCATCTCAGGCTGATGACTGAGGCCTGCCTTCA

Function

GO:

id name namespace
GO:0098930 axonal transport biological_process
GO:0051640 organelle localization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047273 True 456 lncRNA 0.47 2 41334066 41334636

Neighbor

gene id symbol gene type direction distance location
XLOC_023719 rheb coding downstream 14029 41316714 ~ 41320037 (-)
XLOC_023718 crygn2 coding downstream 21607 41305391 ~ 41312459 (-)
XLOC_023716 xylb coding downstream 66882 41233755 ~ 41267184 (-)
XLOC_023717 CABZ01084145.1 coding downstream 79077 41254874 ~ 41254989 (-)
XLOC_023715 acvr2ba coding downstream 113528 41167269 ~ 41220538 (-)
XLOC_023721 NA coding upstream 3670 41338306 ~ 41343046 (-)
XLOC_023722 NA coding upstream 72396 41407032 ~ 41414837 (-)
XLOC_023723 NA coding upstream 111912 41446548 ~ 41460124 (-)
XLOC_023724 CABZ01084131.1 coding upstream 132205 41466841 ~ 41478917 (-)
XLOC_023725 CABZ01044099.1 coding upstream 219977 41554613 ~ 41657005 (-)
XLOC_023665 dre-mir-735 misc downstream 3156039 38177961 ~ 38178027 (-)
XLOC_023714 NA non-coding downstream 181989 41133265 ~ 41152077 (-)
XLOC_023713 NA non-coding downstream 423525 40908525 ~ 40910541 (-)
XLOC_023711 NA non-coding downstream 458573 40873941 ~ 40875493 (-)
XLOC_023708 NA non-coding downstream 519786 40811531 ~ 40814280 (-)
XLOC_023728 CABZ01081282.1 non-coding upstream 492070 41826706 ~ 41826822 (-)
XLOC_023729 NA non-coding upstream 589150 41923786 ~ 41927167 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G528566 NA non-coding CI01000436 null 32685 ~ 39051 (-)