G459386


Basic Information

Item Value
gene id G459386
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95830273 ~ 95833270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU520464
AACAATAtgtgatttgtcacatgctttttGTGAATCAGagattaatatttgtgtcatacCACTCAGATCTCAGGGGTAGTAATGAAATCGATGCTGTTCCTTCATTAGTGTAACACAGTCTCGTAAATCCTTCATTGGCGTAACACAGTCCAGTAGTATGTCAGTGTATTCTCTGTCAGAGGTTATACAGGCCTCTGGGACTGTTATAACATACAGATATATAGCACACTGCTGCTAAAGATAGAAATTCaacattgtttgcatcccaaatgacaccctaatccctacatagtgcactactttagaccagaaccctatggcaccctattccctacatagtgcactactttagaccagagccctatggcaccctattccctgtatagtgcactacttttgaccagagccctcctATAAAGGCACTACAATGTGTGTTTTTATAGAGCCTTTATATCATGCTACTACTGTCTTGGAAGATTTTGTTCCATTGAGACATCTGCTGGTCCATAATAACCTGGACTTTCCTGTCCGTTAGTGAGTAACGGAGTAATGCACAGCCTCAGTCTGGGGTTCATGTAAGGTACTGGGTTAACAGAGTATTAGGCTATAtcgttctgtcgttctgcccctgaacaaggcagttaacccacttcctAGGCCGTCACATCGCAGAGTTTTTTTCTTATGAAGAAAAGATGTAGACGAATGAAACGAGGACACAAGCACATTGTAGATTTGAGTCGGTGTAGATTTCAGTTTAAAGAATGCAGGGCAGTGTTCTGCTGAGGCAGTGTTAAAGACACACCACAGCCAACAACGTGAATGTACTTTTAACAAACCCAAATATGACGTTTCTCCTTCAGTAATAACAGTAGCTTGTATGCCAATAGATTACGAACTGTTTAGATGTCTTAAATGTACTATAAGCGAAGGTAGAAGCCCTCAGTAAACAGTAAGAAGCATTTATACTTAGTCTGGTTTATATTCCTTCAGTGGAAGTCATGGGGAATCAATGAAGTTCTTAACAGATTGATGATGAGGTTTTACGATGTCACCATATCATTGTGCAGGaagtgtttgttttttgttgtatCTGTTACTTTCATCTGATCGTTTACTGTAAACATGTTGCATGAGATTTTATACACAGTCTATAATGACTTCCTGTAGCTGCGTCTGAGGCACTTCAAGACAATAACACTAACAGCCGCAGGAAACAAGGGACATTTCTCACGTTGGTCCTTAATCTTGtcactttttttttatataacctGCCATTTTGAGATTCATCTTAGCAGttaattttattattattttttcttctAACTATAATATCATTTGATGAATGAACGGATATACAGCCGTAGCCATTGGGGTCCAGTCCAGTGACGTATTGTGGTGTTGACATCCAAGCCACAGATATGTGTTGGGTTTCTGCTCGGGTCGGAGTAGGGAACAGTGTGGAGGTGCCATGGTAAATAAAGTCCCGTTGAACCGACGTAGAgttttgagtcccaaatggcaaccaaTTCCCTACTTAGTGCACAATGGGGCCTTggttaaaaagtagtgcacttacatggggaatagggtgcctgtttttttttggggggggggggggggtaaccatAGCAACGGAGTCAACGGAGTGTTTCTCTGCTTTGTTATGAGGAGGAAATGACATCATCAATCTAAACTCTCCAAgtcccatttttttttaaaaatttccTGTCATTTGAAGCCGCTAGCTTTAATCTGCCCCAAAAAGGCCTCTGACTTGGCGTTCTGCAACACCAACTGTTCTGTTTTCAGTACGTTTTTAGAACACAAATCTATTTGGATTTGTCATCTGTAGCACAGTAGAGTCTGCTCACTCTGaaggttatttaaaaaaaaaaaaaaataaaaaaaaaaaattgtcatttagcagacgctcttatccagagcgacttggggtttaagtgctttgctcaagggcacattgacagataaAATAATTCACGTCGTCGGCTTGGCGACGCTAAACCAGCTGTGGTCTATGGACTTTTGTCTGTACTGTTTTGACTAATGTTGCTCAATTCCTTAAGCCTTTTTATTGTTTGCCTCATTCACTTAATATGTATTCATATAATGGACCGCGGATGCTTAGAGGTGAATTTTAAGattgtttttaaatattttgctGATTTTTCTACATTAATGTCAAAAtggtgttttgggggggggggggggggggggagtatattTGAGTGATTTCTACATGTGTTTATGAATGTaaaAGTGATTTCTACATGATTGTTAAAATGGGGGTGGTGGGTGTATTCTACATGCGTTTATGAATGTGAAAAGGGCGGTGGGGACTGGGTAATTTTTTTTACTTCTTTAAACCACTTGGCGATCaagaaaacaaacaaatattttaGCTGTTGGGTAAAACTGCTACGCTACATCGTTTCTATTCTCTAAAACTCTACAACCCAGCTTCTCATTGTCATTTTGGTCGAatgccccacccccccccccccccccccccgtaaaaGGGTTCATAGAAGTGCGCTTGCGGAGCCTCGCTCTCTACCATCACAAGTGAGTCAAACAGCAGTCCTCTGAGCCTCCTAGAGAGGGTCGGGTCAAAGTTCAAATacccagaaaacacacacacaaaaaacaaaagAATGCACAGATGGAGACCTTTGACCTGCGGTTGTTGACCTCTGTTAGAACATTCTGTCTTTGATTCGTGGCCTGCAGATTCCCCCACACCCCCCACACCTCTCTTGAATCAAGTGCACGGTGTACTAAGAGACAATTTATTCACCTAGCTTTTGATCTACTGTAGCTTGCAACTTACAATGGCATCAAATAATGCGACTTGCATTTCTTAATCAACATGTATGGTTACTGATTCTAAACTAAAGTGTACTCTTACGGTTTTGTATGTTTCTCCTCTTAAGAATAAAGGAATCACTTTTTgg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU520464 True 2975 lncRNA 0.41 2 95830273 95833270

Neighbor

gene id symbol gene type direction distance location
LOC110524871 LOC106560642 coding upstream 53477 95735328 ~ 95776796 (+)
LOC118964737 NA coding upstream 183163 95638743 ~ 95647110 (+)
dzip1l LOC106560612 coding upstream 720320 95079374 ~ 95109953 (+)
LOC110524884 kat3 coding upstream 1594785 94221038 ~ 94235488 (+)
LOC110523054 LOC106592820 coding upstream 1628932 94191647 ~ 94201341 (+)
boka LOC106560644 coding downstream 45094 95878364 ~ 95890053 (+)
atg4b atg4b coding downstream 61673 95894943 ~ 95913833 (+)
kif1aa kif1a coding downstream 132903 95966173 ~ 96115469 (+)
LOC110524877 NA coding downstream 287244 96120514 ~ 96126851 (+)
scly scly coding downstream 295125 96128395 ~ 96149227 (+)
G459411 NA non-coding upstream 28206 95801503 ~ 95802067 (+)
G459399 NA non-coding upstream 57714 95770942 ~ 95772559 (+)
G459392 NA non-coding upstream 85946 95744011 ~ 95744327 (+)
G459390 NA non-coding upstream 87902 95741848 ~ 95742371 (+)
G459346 hdlbp non-coding upstream 128093 95696263 ~ 95706519 (+)
G459422 NA non-coding downstream 21551 95854821 ~ 95855394 (+)
G459429 NA non-coding downstream 53017 95886287 ~ 95887028 (+)
G459450 NA non-coding downstream 122922 95956192 ~ 95956985 (+)
G459452 NA non-coding downstream 125277 95958547 ~ 95958815 (+)
G459453 NA non-coding downstream 125863 95959133 ~ 95959359 (+)
G458015 NA other upstream 1694004 94135918 ~ 94136269 (+)
LOC110524846 LOC106560502 other upstream 2085278 93722660 ~ 93780941 (+)
G456927 NA other upstream 2480654 93348794 ~ 93349619 (+)
LOC110524836 rpl36 other upstream 2605182 93221830 ~ 93225091 (+)
G459843 NA other downstream 414016 96247286 ~ 96247962 (+)
ryk LOC106560633 other downstream 641804 96474920 ~ 96619822 (+)
G460428 NA other downstream 1089062 96922332 ~ 96922812 (+)
G461121 jade3 other downstream 1981097 97812808 ~ 97815973 (+)
G461826 NA other downstream 2840986 98674256 ~ 98677063 (+)

Expression

G459386 Expression in all Baseline Samples

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G459386 Expression in each Bioproject

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G459386 Expression in each Sample
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Co-expression Network