Gene
RNA
| Item | Value |
|---|---|
| gene id | G459581 |
| gene name | atg4b |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 95902786 ~ 95905803 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atg4b | Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Is expressed in brain; liver; and muscle. Orthologous to human ATG4B (autophagy related 4B cysteine peptidase). |
| description |
|---|
| cysteine protease ATG4B-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU520702 | True | 668 | lncRNA | 0.54 | 3 | 95902786 | 95905803 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hdlbpa | hdlbp | coding | downstream | 180188 | 95699436 ~ 95722598 (-) |
| trnap-ugg-7 | NA | coding | downstream | 205554 | 95697161 ~ 95697232 (-) |
| sox14 | sox14 | coding | downstream | 553659 | 95345148 ~ 95349127 (-) |
| LOC110524856 | cldn18 | coding | downstream | 777862 | 95111855 ~ 95124924 (-) |
| hs2st1b | LOC106560611 | coding | downstream | 848870 | 94978892 ~ 95053916 (-) |
| dtymk | dtymk | coding | upstream | 8071 | 95913874 ~ 95922379 (-) |
| zgc:103559 | LOC106560661 | coding | upstream | 26183 | 95931986 ~ 95957022 (-) |
| LOC118964700 | NA | coding | upstream | 31983 | 95937514 ~ 95939648 (-) |
| trnap-ugg-8 | NA | coding | upstream | 934699 | 96840502 ~ 96840573 (-) |
| trnap-cgg-2 | NA | coding | upstream | 934961 | 96840764 ~ 96840835 (-) |
| G459588 | NA | non-coding | downstream | 1384 | 95901056 ~ 95901402 (-) |
| G459561 | NA | non-coding | downstream | 29718 | 95870225 ~ 95873068 (-) |
| G459564 | NA | non-coding | downstream | 33966 | 95867815 ~ 95868820 (-) |
| G459557 | NA | non-coding | downstream | 44050 | 95858070 ~ 95858736 (-) |
| G459521 | NA | non-coding | downstream | 126004 | 95775794 ~ 95776782 (-) |
| G459595 | NA | non-coding | upstream | 25578 | 95931381 ~ 95931731 (-) |
| G459738 | NA | non-coding | upstream | 130017 | 96035820 ~ 96038994 (-) |
| G459776 | NA | non-coding | upstream | 194744 | 96100547 ~ 96101294 (-) |
| G459779 | NA | non-coding | upstream | 211886 | 96117689 ~ 96120785 (-) |
| G459323 | NA | other | downstream | 299859 | 95602423 ~ 95602927 (-) |
| G459282 | NA | other | downstream | 343576 | 95558690 ~ 95559210 (-) |
| G457909 | NA | other | downstream | 2039172 | 93860846 ~ 93863614 (-) |
| G457742 | NA | other | downstream | 2439707 | 93462352 ~ 93463079 (-) |
| G457740 | NA | other | downstream | 2460373 | 93441900 ~ 93442413 (-) |
| G459813 | NA | other | upstream | 281665 | 96187468 ~ 96187983 (-) |
| G460020 | NA | other | upstream | 555104 | 96460907 ~ 96464598 (-) |
| G460331 | NA | other | upstream | 875040 | 96780843 ~ 96782021 (-) |
| G460354 | NA | other | upstream | 918432 | 96824235 ~ 96831126 (-) |
| G460623 | NA | other | upstream | 1122716 | 97028519 ~ 97030389 (-) |
