G459450


Basic Information

Item Value
gene id G459450
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 95956192 ~ 95956985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU520548
ctaattctgacgttaAACTGTGAGAACTAGTTGAACTGGGAAGTGTTTTTCTTCATAGGAAATTATTACGCAAACATTCTGAACAAACAAAGTCATAattaacacaaaaaaataaataaaaataaaataccaaATTGAGCAGAAGCCAGAGAGCCAATCAATACCTACCTCACAGCCAGCAGCAGTATCCCCAGTAGAACCACTGGAGTCTGGGAGGATTTTGTGTATCTTTCCTTCCTTGATGACAATCAGAGCAGGCCGTATCTCTGTGCCACACAGAACCCTGCTACTCCTCACTGCACTCACGGTCGACCCAGGCTCCATTACTGCAGGACTACCTGGGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACCAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGGGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTAAAACAAACGGACTCTGCTTTTAAGTCTG
>TU520549
ctaattctgacgttaAACTGTGAGAACTAGTTGAACTGGGAAGTGTTTTTCTTCATAGGAAATTATTACGCAAACATTCTGAACAAACAAAGTCATAattaacacaaaaaaataaataaaaataaaataccaaATTGAGCAGAAGCCAGAGAGCCAATCAATACCTACCTCACAGCCAGCAGCAGTATCCCCAGTAGAACCACTGGAGTCTGGGAGGATTTTGTGTATCTTTCCTTCCTTGATGACAATCAGAGCAGGCCGTATCTCTGTGCCACACAGAACCCTGCTACTCCTCACTGCACTCACGGTCGACCCAGGCTCCATTACTGCAGGACTACCTGGGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACCAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGGGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTAAAACAAACGGACTCTGCTTTTAAGTCTG
>TU520550
ctaattctgacgttaAACTGTGAGAACTAGTTGAACTGGGAAGTGTTTTTCTTCATAGGAAATTATTACGCAAACATTCTGAACAAACAAAGTCATAattaacacaaaaaaataaataaaaataaaataccaaATTGAGCAGAAGCCAGAGAGCCAATCAATACCTACCTCACAGCCAGCAGCAGTATCCCCAGTAGAACCACTGGAGTCTGGGAGGATTTTGTGTATCTTTCCTTCCTTGATGACAATCAGAGCAGGCCGTATCTCTGTGCCACACAGAACCCTGCTACTCCTCACTGCACTCACGGTCGACCCAGGCTCCATTACTGCAGGACTACCTGGGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACCAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGGGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTAAAACAAACGGACTCTGCTTTTAAGTCTG
>TU520551
ctaattctgacgttaAACTGTGAGAACTAGTTGAACTGGGAAGTGTTTTTCTTCATAGGAAATTATTACGCAAACATTCTGAACAAACAAAGTCATAattaacacaaaaaaataaataaaaataaaataccaaATTGAGCAGAAGCCAGAGAGCCAATCAATACCTACCTCACAGCCAGCAGCAGTATCCCCAGTAGAACCACTGGAGTCTGGGAGGATTTTGTGTATCTTTCCTTCCTTGATGACAATCAGAGCAGGCCGTATCTCTGTGCCACACAGAACCCTGCTACTCCTCACTGCACTCACGGTCGACCCAGGCTCCATTACTGCAGGACTACCTGGGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACCAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGGGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTAAAACAAACGGACTCTGCTTTTAAGTCTG
>TU520552
ctaattctgacgttaAACTGTGAGAACTAGTTGAACTGGGAAGTGTTTTTCTTCATAGGAAATTATTACGCAAACATTCTGAACAAACAAAGTCATAattaacacaaaaaaataaataaaaataaaataccaaATTGAGCAGAAGCCAGAGAGCCAATCAATACCTACCTCACAGCCAGCAGCAGTATCCCCAGTAGAACCACTGGAGTCTGGGAGGATTTTGTGTATCTTTCCTTCCTTGATGACAATCAGAGCAGGCCGTATCTCTGTGCCACACAGAACCCTGCTACTCCTCACTGCACTCACGGTCGACCCAGGCTCCATTACTGCAGGACTACCTGGGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACCAAACGGGTTCTGCTAGTCTAAAGAGTAAAACAAACGGACTCTGCTTTTAAGTCTG
>TU520553
ctaattctgacgttaAACTGTGAGAACTAGTTGAACTGGGAAGTGTTTTTCTTCATAGGAAATTATTACGCAAACATTCTGAACAAACAAAGTCATAattaacacaaaaaaataaataaaaataaaataccaaATTGAGCAGAAGCCAGAGAGCCAATCAATACCTACCTCACAGCCAGCAGCAGTATCCCCAGTAGAACCACTGGAGTCTGGGAGGATTTTGTGTATCTTTCCTTCCTTGATGACAATCAGAGCAGGCCGTATCTCTGTGCCACACAGAACCCTGCTACTCCTCACTGCACTCACGGTCGACCCAGGCTCCATTACTGCAGGACTACCTGGGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAACGGGTTCTGCTAGTCTAAAGAGTGGAACAAAACGGGTTCTGCTAGTCTAAAGGGTGGAACAAAACGGGTTCTGCTAGTCTAAAGAGTAAAACAAACGGACTCTGCTTTTAAGTCTG

Function

NR:

description
PREDICTED: allantoinase, mitochondrial-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU520548 False 732 lncRNA 0.44 2 95956192 95956985
TU520549 False 669 lncRNA 0.43 2 95956192 95956985
TU520550 False 638 lncRNA 0.43 2 95956192 95956985
TU520551 False 670 lncRNA 0.43 3 95956192 95956985
TU520552 False 606 lncRNA 0.43 2 95956192 95956985
TU520553 True 607 lncRNA 0.43 2 95956192 95956985
Loading

Neighbor

gene id symbol gene type direction distance location
atg4b atg4b coding upstream 42359 95894943 ~ 95913833 (+)
boka LOC106560644 coding upstream 66139 95878364 ~ 95890053 (+)
farp2 farp2 coding upstream 82826 95776948 ~ 95873366 (+)
LOC110524871 LOC106560642 coding upstream 179396 95735328 ~ 95776796 (+)
LOC118964737 NA coding upstream 309082 95638743 ~ 95647110 (+)
kif1aa kif1a coding downstream 9188 95966173 ~ 96115469 (+)
LOC110524877 NA coding downstream 163529 96120514 ~ 96126851 (+)
scly scly coding downstream 171410 96128395 ~ 96149227 (+)
espnla espnl coding downstream 197733 96154718 ~ 96202354 (+)
sned1 LOC106560632 coding downstream 377415 96334400 ~ 96469920 (+)
G459429 NA non-coding upstream 69164 95886287 ~ 95887028 (+)
G459422 NA non-coding upstream 100798 95854821 ~ 95855394 (+)
G459386 NA non-coding upstream 122922 95830273 ~ 95833270 (+)
G459411 NA non-coding upstream 154125 95801503 ~ 95802067 (+)
G459399 NA non-coding upstream 183633 95770942 ~ 95772559 (+)
G459452 NA non-coding downstream 1562 95958547 ~ 95958815 (+)
G459453 NA non-coding downstream 2148 95959133 ~ 95959359 (+)
G459614 NA non-coding downstream 15017 95972002 ~ 95980662 (+)
G459617 NA non-coding downstream 33179 95990164 ~ 96076672 (+)
G459618 NA non-coding downstream 33844 95990829 ~ 95991511 (+)
G459346 hdlbp other upstream 249673 95696263 ~ 95706519 (+)
G458015 NA other upstream 1819923 94135918 ~ 94136269 (+)
LOC110524846 LOC106560502 other upstream 2211197 93722660 ~ 93780941 (+)
G456927 NA other upstream 2606573 93348794 ~ 93349619 (+)
LOC110524836 rpl36 other upstream 2731101 93221830 ~ 93225091 (+)
G459843 NA other downstream 290301 96247286 ~ 96247962 (+)
ryk LOC106560633 other downstream 518089 96474920 ~ 96619822 (+)
G460428 NA other downstream 965347 96922332 ~ 96922812 (+)
G461121 jade3 other downstream 1857382 97812808 ~ 97815973 (+)
G461826 NA other downstream 2717271 98674256 ~ 98677063 (+)

Expression

G459450 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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G459450 Expression in each Bioproject

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G459450 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
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Co-expression Network