G459779


Basic Information

Item Value
gene id G459779
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 96117689 ~ 96120785 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU520930
TTGTATTGAACAGCAGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCAGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCCGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCAGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCAGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCAGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCAGAGCCACAGCAATACAAGTATTGGCATTACAGTTCTTCCTTCTCTTAATAATATTGtgcatctcaaatgacaccctgttccctatatagtgcactactttagaccaggaccctttggcaccctattccctattaaggCTCATCTGGAGTTTGTGATACATGGCCAATATAGCACGGCTAAggcctgtatccaggcactccgcgttgtgtcgtgcttaagaacagcccttagctgtggtatattggccatattccacacctcctcgggccttattgcttaactatataaggaatagggtgccccTTTGAGACATAACCTATAAGTGCTATGTCATTTCCTGCTCGTACTGAGCATGCTCTGTAGGTTGGCTGGCCTCAGGCATGCTTCTTATCAAAAGCTACAGGTAGCagtgtatcaatcaatcaatttggTCTCTGTCACTACATCAATGGCTGGAAAGCGATGGATGATAAATGAGCCCGTTAAACAACATCTCCCTGGGTATGCTATACTTCCTGAGACTCACATAAAGAAGACAAGAAGAACCCTGCATGCCATGAAAGAAGTGTCTACTGGGCATACTGACAGCTGTCCTGTTCTCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCTGTCCTGTTATCTTCCAACTGTGAGTAGTGACTACTGGGTATACTGACAGCTGTCCTGTTCTCTTCCAACTGTGAGTAGTGCCTACTGGACATACTGACAGCTGTCCTGTTCTCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCTGTCCTGTTCTCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCTGTCCTGTTATCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCTGTCCTGTTATCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCTGTCCTGTTATCTTCCAGCTGTGAGTAGTGACTACTGGGTATACTGACAGCTGTCCTGTTATCTTCCAACTGTGAGTAGTGACTACTGGGTATACTGACAGCTGTCCTGTTATCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCTGTCCTGTTCTCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCTGTCCTGTTATCTTCCAGCTGTGAGTAGTGACTACTGGGTATACTGACAGCTGTCCTGTTATCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCCGTCCTGTACTCTTCCAACTGTGAGTAGTGACTACTGGACATACTGACAGCCGTCCTGTACTCTTCCAACTGTGAGTGAAACATATAGCAGGGTAATAGCATAGTAAATACACAATACAACTGATGAccaactttaaaaaataaaaaaaacacaaaaaaggcTCCTCGGTCATCATTCTGCTTCCCTGTTGTCTGGACTGGACCCACTACGATGACTAATGTTTGCTCGATACAAAACAAACAGACCATACATTTACAATTCATCACGATTCACTCACGTACAGTAGCTGCAATACTGATGCATACGTCCACGTGTACACAATAAGTGCTGTTGAACGGAAAACAAAAAGGGACTAAAgactaaaataataataatttaacttCACGTGAGATGATCTAAAAAAGAAGCAATCGAAGAGGACGTGAGCGCCATGTAATTTGCCGGATTCAATCTGGTTATTATACAGAAAATGGTCTACAATGAAATATCAGTAGTATATTTCTATAGAAATGGATCATCCTATACTAATCACTCGATAATATGTTTATAAAATGGCGTACGGTATGTGAAAACTCATATTCATTGTCTTTAAGTGCATATACGCTCATATCGATCTCCGAcaattgttttgttgtttttttggctCTTTTACTCCCAGCACATTGGAtgtgaaatgatacaatgactaggAGGTCAAAGTGCAggactgtcagctttaatatgaggagtattttcatccatatcgggcgaaatgtttagaaattaaagcactttttttgtttgttcatAGTCCCTCcgttttaggggaccaaaagtattgggataaattaactttatgattTCAactccaaagtgctggagtacagagctaaaacaacaacaacaacaacaacagaagcaAACAAAATGTCCACTGTACCAATAGTTTTGCAGCTCGCTGTATATTAGCCTACTGTGTACATAAATAGATGATGATTGGCTAGACAAAAACAGCCACGTGATGAAGACAGAGTCACAAAATAGAACCCTAGTCCCTATGtaggtgcactacttttaacaagagcccataggactctggtcaaaagtagtgcactacacagggaatataTGGAATCATTTGGGACATGATGAAGTAGATCCAAAGCAACTGAGGGACTACAGATATACTGTTTGAAAAGAGAGGCACTGCATCATATGTACAAATCCTTGTTCAGAAACCTCGTTTCTTGTCTTATCCCTAGTGCGCTACAAACAGCTCGTTTTCATTTTCCCCCTCATTCTATTCACTATGTAAGGGATCGGGGATCGTTCTGTCCATGCACCCATCTGTTTCCCCATCTCCCAGCTTTGAAGTATAATCAATTTCCATTATGTTCACAATCTCTCAAGCTTCTAAAATATTGTATCGTGAGTGAAATAGGGGTTGCAAATAGCTCAGGTACAACACTTCAAAATCTATCTATGTGATGTTGATGGTTTAATTCAAGTAACATGTAGCTGCTATACTATAGCACATAGAAGATGACCCTGTATCAATTTGTTtagctttttttggggggggggttagcaCTTTTCACAACTGACCACAGTAAGAAGTGGTAGGTGGTAGAGGTCATAGGTCATGT

Function

NR:

description
PREDICTED: leucine-rich repeat extensin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU520930 True 3097 lncRNA 0.42 1 96117689 96120785

Neighbor

gene id symbol gene type direction distance location
zgc:103559 LOC106560661 coding downstream 160667 95931986 ~ 95957022 (-)
LOC118964700 NA coding downstream 178041 95937514 ~ 95939648 (-)
dtymk dtymk coding downstream 195310 95913874 ~ 95922379 (-)
hdlbpa hdlbp coding downstream 395091 95699436 ~ 95722598 (-)
trnap-ugg-7 NA coding downstream 420457 95697161 ~ 95697232 (-)
trnap-ugg-8 NA coding upstream 719717 96840502 ~ 96840573 (-)
trnap-cgg-2 NA coding upstream 719979 96840764 ~ 96840835 (-)
LOC110524866 LOC106560606 coding upstream 1035263 97156048 ~ 97157070 (-)
LOC118964738 NA coding upstream 1040000 97160785 ~ 97161999 (-)
LOC110524862 LOC106560604 coding upstream 1053182 97173967 ~ 97192535 (-)
G459776 NA non-coding downstream 16395 96100547 ~ 96101294 (-)
G459738 NA non-coding downstream 78695 96035820 ~ 96038994 (-)
G459595 NA non-coding downstream 185958 95931381 ~ 95931731 (-)
G459581 atg4b non-coding downstream 211886 95902786 ~ 95905803 (-)
G459778 NA non-coding upstream 849 96121634 ~ 96126775 (-)
G459788 NA non-coding upstream 27705 96148490 ~ 96157209 (-)
G459803 NA non-coding upstream 49276 96170061 ~ 96170332 (-)
G459807 NA non-coding upstream 60577 96181362 ~ 96181671 (-)
G459809 NA non-coding upstream 61511 96182296 ~ 96182518 (-)
G459323 NA other downstream 514762 95602423 ~ 95602927 (-)
G459282 NA other downstream 558479 95558690 ~ 95559210 (-)
G457909 NA other downstream 2254075 93860846 ~ 93863614 (-)
G457742 NA other downstream 2654610 93462352 ~ 93463079 (-)
G457740 NA other downstream 2675276 93441900 ~ 93442413 (-)
G459813 NA other upstream 66683 96187468 ~ 96187983 (-)
G460020 NA other upstream 340122 96460907 ~ 96464598 (-)
G460331 NA other upstream 660058 96780843 ~ 96782021 (-)
G460354 NA other upstream 703450 96824235 ~ 96831126 (-)
G460623 NA other upstream 907734 97028519 ~ 97030389 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G55326 NA non-coding CM030126.1 CM030126.1 28721540 ~ 28727970 (-)