G459778


Basic Information

Item Value
gene id G459778
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 96121634 ~ 96126775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU520927
TCGTGTTTCAGAAGTTCCACGTTTATTTAATATCAATTGACGATGTGTTTTAATGTACACCAACTGTTTATGCTTCAACTCCAACACTCAAATAGAGACATTGATTTAACTACTGAACAGTTAAGATGGTGTTTCAACGGGTTACAGCGGTATGGTGTACTGTTCACAGCAATCATGTTGTTTTATATACAATGCAACAAACAAAAAGAACATGAAGAAAACCAAATTGAAAAATGTTTTAATGGGTGCAGTTTAACAGAGCTATAGAAACAATACAATCAGTTCTGATTAAATATGGAAGCACACTTGGTGGTTCAAAAGCTACTTTGTGAATTCTGTGATGGTGATGACTGAGAGGGGATGTGGATGTTTGTGGCCAGACAGTGAAACAGgattgacagacagacattgtTCGAGTCCCaaacggtaccctattccctatgcagtgcactagttttgaccagatcCCATAAGAGTCCCaaacggtaccctattccctatgcagtgcactagttttgaccagatcCCATAAGAGTCCCAAACGGTACCCTATTCCCAAtgcagtgcactatttttgaccagatcccataaaaagtagtgcactattaagggaatagggtgccatttgggactaatgACCCAGTCTACATGATGTCCTGGCTACATTCAAAAGGCCATATGAACACTTCTCCTCTTAGGTAAGGGTATTTTATGTCCTATACAGTGTAGTGCCCTTGATATTGTAAACTGGGAAGGAGACAACCATAACCTGCTCAATAGGCCCACACACTGCAATCCAGTATAATAAAAGTATGATAATAATCATTTACATTCTACCAGACTGTATGTGAGATTTCAGTGATGCACCACCACCATCCATGACTATTTGGGCTTTCTGATTAAATCAATGGAACAAGACAAACTGTGAGGAAATTAGCTAGACCCAACAGGTGTAGAACCCATTGGTACAGGGTAgaactctgacccactgggacagGGTAgaactctgacccactgggacagGGTAGAACTCTGACCCATTGGTACAGGGTAGAACTCTGACCTACTGGTACAGGGTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCTAGACCTCTGACAGGCTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCtagacctctgacccactgggacaggctagacctctgacccactggtacaGGCTAGACCTCTGACCTACTGGTACAGGCtagacctctgacccactggtacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactggtacaGGCTAGACCTCTGACCTACTGGTACAGGCTAGACCTCTGACCCATTGGTACAGGCtagacctctgacccactggtacaggctagacctctgacccactggtacaGGGTAGAACTCTGACCCACTGGTACAGGGTAGAACTCTGACCTACTGGTAAAGGGTAGACCTCTGACCCATTGGTACAGGGTAgaactctgacccactgggacagGCTAGACCTCTGACCTACTGGTACAGGCTAgacgtctgacccactggtacaggctagacctctgacccactggtacaGGCTAGACCTCTGACAGGCTAGACCTCTGACCTACTGGTACAGGCtagacctctgacccactggtacaGGCTAGACCTCTGACACACTGGTACAGGCTAGACGTCTGACACACTGGTACAGGCTAGACCTCTGACACACTGGTACAGGCTAGACCTCTGACACACTGGTACAGGTTAGACCTCTGACACACTGGTACAGGTTAGACCTCTGACACACTGGTACAGGGTAGACCTCTGACACACTGGTACAGGGTAGACCTCTGACAGGCTAGACCTCTGACCCGTAGGTAAAGGGTAGACCTCTGACAAGCTAGACCTCTGACCCGTTGGTAAAGGGTAGACCTGTGACAGGCTAGACCTCTGACACGCTGGAACAGGTtagacctctgacccactggtacaGGTTAGACCTCTAACAGGCTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTTGGTACAGGGTAGACCTCTGACCCGTTTGGTACAGGGTAGACCTCTGACCCGTTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCTGACTTGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGGCCTCTGACCCGTTGGTACAGGGTAGGCCTCTGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGCTAGACCTCTGACCCGTTGGTACAGGCTAGACCTCTGACCCGTTTGTACAGGCTAGACCTCTGACCCGTTGGTACAGGCTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCCGACCCGTTGGTACAGGGTAGACCTCTGACCCGTTGGTACAGGGTAGACCTCCGACCCGTTGGTACAGGGTAGACCTGACTTCCCCTTGAACCCCAAAGGAATGATAACGGTTTTAAAATGCGCATTTACCCTGTAGTTATACAGTAAGATACATTGATATGGGTAAAATGACCTTATATCACAACCTTCATTAGATTGAATCATTACTGTCAAATCTAATATCGTTTACACACAGAGCCCTTTCAACATGGTACAGTATGTGAAGAGATACGCATGTCGGCCacggtggaaaaagtactcaattgtcatacttgagaaaaagtaaagatacctttaaagaaaatgactcaggtaaaagtgaaagtcaccctgtaaaatactacttgactaaaagtatttagttttaaaatgtacttaagtatcaaaaataaaatgtaattgctaaaatatacttaaaagtatcaaaagtaaaagtataaatcatttcaaattcctttatATTGAGCAAATCGGGCAGCACAATTTTCTTGCTTTTTAATTTTACGGAGAGCCAGGggcactcagacatcattttcaAACTAAGCATATGTTTTTATTGAGTCGGGATGACCGTTGTATTGAACAGCGGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCCGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCGGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCCGAGCCACAGCTGTGTTCCGTTGTATTGAACAGCAGAGCCACAGCTGTGTTCC
>TU520928
TCGTGTTTCAGAAGTTCCACGTTTATTTAATATCAATTGACGATGTGTTTTAATGTACACCAACTGTTTATGCTTCAACTCCAACACTCAAATAGAGACATTGATTTAACTACTGAACAGTTAAGATGGTGTTTCAACGGGTTACAGCGGTATGGTGTACTGTTCACAGCAATCATGTTGTTTTATATACAATGCAACAAACAAAAAGAACATGAAGAAAACCAAATTGAAAAATGTTTTAATGGGTGCAGTTTAACAGAGCTATAGAAACAATACAATCAGTTCTGATTAAATATGGAAGCACACTTGGTGGTTCAAAAGCTACTTTGTGAATTCTGTGATGGTGATGACTGAGAGGGGATGTGGATGTTTGTGGCCAGACAGTGAAACAGgattgacagacagacattgtTCGAGTCCCaaacggtaccctattccctatgcagtgcactagttttgaccagatcCCATAAaaagtagtgcactattaagggaatagggtgccatttgggactaatgACCCAGTCTACATGATGTCCTGGCTACATTCAAAAGGCCATATGAACACTTCTCCTCTTAGGTAAGGGTATTTTATGTCCTATACAGTGTAGTGCCCTTGATATTGTAAACTGGGAAGGAGACAACCATAACCTGCTCAATAGGCCCACACACTGCAATCCAGTATAATAAAAGTATGATAATAATCATTTACATTCTACCAGACTGTATGTGAGATTTCAGTGATGCACCACCACCATCCATGACTATTTGGGCTTTCTGATTAAATCAATGGAACAAGACAAACTGTGAGGAAATTAGCTAGACCCAACAGGTGTAGAACCCATTGGTACAGGGTAgaactctgacccactgggacagGGTAgaactctgacccactgggacagGGTAGAACTCTGACCCATTGGTACAGGGTAGAACTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCTAGACCTCTGACAGGCTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCtagacctctgacccactggtacaGGGTAGAACTATGACCCACTGGGACAGGCtagacctctgacccactggtacaGGGTAGAACTCTGCCCACTGGTACAGGCTAGACCTCTGACCCATTGGTAAAGGGtagacctctgacccactggtacaGGCTAGACCTCTGACCTACTGGTACAGGCTAGACCTCTGACCCATTGGTACAGGCtagacctctgacccactggtacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactggtacaGGGTAGAACTCTGACCCACTGGTAAAGGGTAGACCTCTGACCCATTGGTACAGGGTAgaactctgacccactgggacagGCTAgaactctgacccactgggacagGGTAGAACTCTGACCCATTGGTAAAGGGTAGAACTCTGACCCACTGGTACAGGGTAGAATTCTGACCTACTGGTACAGGGTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCTAGACCTCTGACAGGCTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCtagacctctgacccactggtacaGGGTAGAACTATGACCCACTGGGACAGGCtagacctctgacccactggtacaGGGTAGAACTCTGCCCACTGGTACAGGCTAGACCTCTGACCCATTGGTAAAGGGtagacctctgacccactggtacaGGCTAGACCTCTGACCTACTGGTACAGGCTAGACCTCTGACCCATTGGTACAGGCtagacctctgacccactggtacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacc
>TU520929
TCGTGTTTCAGAAGTTCCACGTTTATTTAATATCAATTGACGATGTGTTTTAATGTACACCAACTGTTTATGCTTCAACTCCAACACTCAAATAGAGACATTGATTTAACTACTGAACAGTTAAGATGGTGTTTCAACGGGTTACAGCGGTATGGTGTACTGTTCACAGCAATCATGTTGTTTTATATACAATGCAACAAACAAAAAGAACATGAAGAAAACCAAATTGAAAAATGTTTTAATGGGTGCAGTTTAACAGAGCTATAGAAACAATACAATCAGTTCTGATTAAATATGGAAGCACACTTGGTGGTTCAAAAGCTACTTTGTGAATTCTGTGATGGTGATGACTGAGAGGGGATGTGGATGTTTGTGGCCAGACAGTGAAACAGgattgacagacagacattgtTCGAGTCCCaaacggtaccctattccctatgcagtgcactagttttgaccagatcCCATAAGAGTCCCaaacggtaccctattccctatgcagtgcactagttttgaccagatcCCATAAGAGTCCCAAACGGTACCCTATTCCCAAtgcagtgcactatttttgaccagatcccataaaaagtagtgcactattaagggaatagggtgccatttgggactaatgACCCAGTCTACATGATGTCCTGGCTACATTCAAAAGGCCATATGAACACTTCTCCTCTTAGGTAAGGGTATTTTATGTCCTATACAGTGTAGTGCCCTTGATATTGTAAACTGGGAAGGAGACAACCATAACCTGCTCAATAGGCCCACACACTGCAATCCAGTATAATAAAAGTATGATAATAATCATTTACATTCTACCAGACTGTATGTGAGATTTCAGTGATGCACCACCACCATCCATGACTATTTGGGCTTTCTGATTAAATCAATGGAACAAGACAAACTGTGAGGAAATTAGCTAGACCCAACAGGTGTAGAACCCATTGGTACAGGGTAgaactctgacccactgggacagGGTAgaactctgacccaTTGGTAAAGGGTAGAACTCTGACCCACTGGTACAGGGTAGAACTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCTAGACCTCTGACAGGCTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCtagacctctgacccactggtacaGGGTAGAACTATGACCCACTGGGACAGGCtagacctctgacccactggtacaGGGTAGAACTCTGCCCACTGGTACAGGCTAGACCTCTGACCCATTGGTAAAGGGtagacctctgacccactggtacaGGCTAGACCTCTGACCTACTGGTACAGGCTAGACCTCTGACCCATTGGTACAGGCtagacctctgacccactggtacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactggtacaGGGTAGAACTCTGACCCACTGGTAAAGGGTAGACCTCTGACCCATTGGTACAGGGTAgaactctgacccactgggacagGCTAgaactctgacccactgggacagGGTAGAACTCTGACCCATTGGTAAAGGGTAGAACTCTGACCCACTGGTACAGGGTAGAATTCTGACCTACTGGTACAGGGTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCTAGACCTCTGACAGGCTAGACCTCTGACCTACTGGTACAGGGTAGAACTCTGACCCACTGGTACAGGCtagacctctgacccactggtacaGGGTAGAACTATGACCCACTGGGACAGGCtagacctctgacccactggtacaGGGTAGAACTCTGCCCACTGGTACAGGCTAGACCTCTGACCCATTGGTAAAGGGtagacctctgacccactggtacaGGCTAGACCTCTGACCTACTGGTACAGGCTAGACCTCTGACCCATTGGTACAGGCtagacctctgacccactggtacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactgggacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacccactggtacaggctagacctctgacc

Function

NR:

description
PREDICTED: protein starmaker-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU520927 False 3370 lncRNA 0.47 2 96121634 96126775
TU520928 False 2250 lncRNA 0.50 3 96124382 96126775
TU520929 True 2368 lncRNA 0.49 2 96124382 96126775

Neighbor

gene id symbol gene type direction distance location
zgc:103559 LOC106560661 coding downstream 164612 95931986 ~ 95957022 (-)
LOC118964700 NA coding downstream 181986 95937514 ~ 95939648 (-)
dtymk dtymk coding downstream 199255 95913874 ~ 95922379 (-)
hdlbpa hdlbp coding downstream 399036 95699436 ~ 95722598 (-)
trnap-ugg-7 NA coding downstream 424402 95697161 ~ 95697232 (-)
trnap-ugg-8 NA coding upstream 713727 96840502 ~ 96840573 (-)
trnap-cgg-2 NA coding upstream 713989 96840764 ~ 96840835 (-)
LOC110524866 LOC106560606 coding upstream 1029273 97156048 ~ 97157070 (-)
LOC118964738 NA coding upstream 1034010 97160785 ~ 97161999 (-)
LOC110524862 LOC106560604 coding upstream 1047192 97173967 ~ 97192535 (-)
G459779 NA non-coding downstream 849 96117689 ~ 96120785 (-)
G459776 NA non-coding downstream 20340 96100547 ~ 96101294 (-)
G459738 NA non-coding downstream 82640 96035820 ~ 96038994 (-)
G459595 NA non-coding downstream 189903 95931381 ~ 95931731 (-)
G459788 NA non-coding upstream 21715 96148490 ~ 96157209 (-)
G459803 NA non-coding upstream 43286 96170061 ~ 96170332 (-)
G459807 NA non-coding upstream 54587 96181362 ~ 96181671 (-)
G459809 NA non-coding upstream 55521 96182296 ~ 96182518 (-)
G459812 NA non-coding upstream 58614 96185389 ~ 96185615 (-)
G459323 NA other downstream 518707 95602423 ~ 95602927 (-)
G459282 NA other downstream 562424 95558690 ~ 95559210 (-)
G457909 NA other downstream 2258020 93860846 ~ 93863614 (-)
G457742 NA other downstream 2658555 93462352 ~ 93463079 (-)
G457740 NA other downstream 2679221 93441900 ~ 93442413 (-)
G459813 NA other upstream 60693 96187468 ~ 96187983 (-)
G460020 NA other upstream 334132 96460907 ~ 96464598 (-)
G460331 NA other upstream 654068 96780843 ~ 96782021 (-)
G460354 NA other upstream 697460 96824235 ~ 96831126 (-)
G460623 NA other upstream 901744 97028519 ~ 97030389 (-)

Expression


Co-expression Network