XLOC_023730


Basic Information

Item Value
gene id XLOC_023730
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 41937199 ~ 41938777 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047275
CaccaaaacaccctaacaaccaaacTACAACTTCCTAGAACACCtgaaaacaccatagcaacatcctaaaggacaccctagcaactaacACACCAGTAACTTGCAACCTAACTACAATTACTCAAAACACCCTTACAAGTAAACTACTACCACCCAAAAGACACTAACAACCAAACTACAAGCACACGAAACGCCCCAACAACTAAACTACAATCACCTAAAACCACCCTAACAACCAAACTACTACCACTTAAAAGACACTAACAaccaaacaacaaacacaaaaacacactgatAAGCAAACTACAAGCACACGAAACACCTCAACAACCAAACTACAACCACCTAAAACCACCCTAACAAACAAACTACAAGCACCCAAAACACCCTGACAACCAAACTACAACCACCTAAAACCACTCTAACAACTAAACTACAACCACCTAAAAGACACTAACAACCAAACTACAAACCCGCAAAACACAATGACAACCAAACTACAAGCACAAACCTACCCTAACAACCAAACTACAAGCACCTAAAACCACCCTAACAACCAAACTACAAGCACCTAAAACACATTGACAACTAAACAATAAGAacccaaaacaccctaacaaccacccaAACAACCCCAACAACCAAACTACAACCACCTAAAACCACCCTAACAACCAAACTACAACCACCTAAAACACATTGACAACCAAACTACAAGAACCCAAAACACATGATAAACCAATCTACAACCACCCAAACGACCCTAACAACCAAACTACaaacactcaaaacaccctaacaactaaaCTACAACCACCTAAAACACACTGTCAACCAAACTACAACTACCTTAAACACcctaaaaactaaactacaacCACATAACACCCTAGAAACCAAACTATAAGCTCCCTAAACATTATAACAACCAAACTACAACCACCCAAAACACACTAACAACCAAACTACaaacactcaaaacaccctaacaaccaaacTACaaacactcaaaacaccctaacaaccaaacTACaaacactcaaaacaccctaacaaccaaactaaaaacactcaaaacaccctaacaaccaaacTACGaacactcaaaacaccctaacaaccaaacTACaaacactcaaaacaccctaacaaccaaacTACAACCACCCAAAACACACTAACAACCAAACTACAAACACTCAAA
>TCONS_00047276
ctaacaaccaaacTACAACTTCCTAGAACACCtgaaaacaccatagcaacatcctaaaggacaccctagcaactaacACACCAGTAACTTGCAACCTAACTACAATTACTCAAAACACCCTTACAAGTAAACTACTACCACCCAAAAGACACTAACAACCAAACTACAAGCACACGAAACGCCCCAACAACTAAACTACAATCACCTAAAACCACCCTAACAACCAAACTACTACCACTTAAAAGACACTAACAaccaaacaacaaacacaaaaacacactgatAAGCAAACTACAAGCACACGAAACACCTCAACAACCAAACTACAACCACCTAAAACCACCCTAACAAACAAACTACAAGCACCCAAAACACCCTGACAACCAAACTACAACCACCTAAAACCACTCTAACAACTAAACTACAACCACCTAAAAGACACTAACAACCAAACTACAAACCCGCAAAACACAATGACAACCAAACTACAAGCACAAACCTACCCTAACAACCAAACTACAAGCACCTAAAAGACACTAACAACCAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047275 False 1204 lncRNA 0.39 2 41937199 41938777
TCONS_00047276 True 547 lncRNA 0.40 2 41937971 41938765

Neighbor

gene id symbol gene type direction distance location
XLOC_023729 NA coding downstream 10032 41923786 ~ 41927167 (-)
XLOC_023728 CABZ01081282.1 coding downstream 110377 41826706 ~ 41826822 (-)
XLOC_023727 arhgap28 coding downstream 139518 41786274 ~ 41797681 (-)
XLOC_023726 lrrc30a coding downstream 257843 41678257 ~ 41679356 (-)
XLOC_023725 CABZ01044099.1 coding downstream 280194 41554613 ~ 41657005 (-)
XLOC_023731 ppp4r1 coding upstream 122190 42060967 ~ 42072886 (-)
XLOC_023732 ssr1 coding upstream 142951 42081728 ~ 42090635 (-)
XLOC_023733 NA coding upstream 152432 42091209 ~ 42094078 (-)
XLOC_023734 pigm coding upstream 163427 42102204 ~ 42108655 (-)
XLOC_023735 NA coding upstream 196274 42135051 ~ 42141140 (-)
XLOC_023665 dre-mir-735 misc downstream 3759172 38177961 ~ 38178027 (-)
XLOC_023723 NA non-coding downstream 477075 41446548 ~ 41460124 (-)
XLOC_023722 NA non-coding downstream 522362 41407032 ~ 41414837 (-)
XLOC_023721 NA non-coding downstream 594153 41338306 ~ 41343046 (-)
XLOC_023737 NA non-coding upstream 229237 42168014 ~ 42170743 (-)
XLOC_023738 NA non-coding upstream 232249 42171026 ~ 42172918 (-)

Expression


Co-expression Network