XLOC_023732 (ssr1)


Basic Information

Item Value
gene id XLOC_023732
gene name ssr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42081728 ~ 42090635 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046774
TTCAGACGTGTTCATCTGTCGGTGATTCTGCGCGTGATTTCCGCCGTTTCTGCTCTCCGGTTAAGATGAAACTGCTGCAgaaactgctgctgctgctcctgCTGGCGTTTCCCGCCACGCTGATGCTGAAGGGTCCTGTAGTGTCTGCTCAGGACGCCACTGAGGAAGAGGAGGCTGTGGATGAAGATGCTGGTGATGATGTGCTGGCggaggatgaggatgatgaagcCGAGGTGGAGGACGATGAGAACACTGAGCTGACGGAAGagaaagaggaagaggaagaagaagctCTAGTGGGAGAGGTGAAGGCTTCACCCAACGCAGACACAACCATCCTGTTCGTCAAAGGAGAAGATTTTCCAGCTAACAACATCGTGAAGTTCCTGCTGGGCTTCAGCAATAAGGGCTCGGAGAACTTCGTGGTGGAGTCTCTGGACGCCTCGTTCCGTTACCCGCAGGACTTCCAGTTCTACATCCAGAACTTCACGGCGCTGCAGCTGGGCACACTGGTCCCTCCACAGCGCCAGGCCACCTTCGAGTACTCCTTCATCCCCGCTGAGCCCATGGGCGGACGACCCTTCGGCCTCGTCATCAACCTCAACTACAGGGAcgacagtGGAAACGTTTTCCAGGACGCCGTCTTCAACCAGACTGTCACCATCACAGAGAGAGAGGACGGCCTGGACGGAGAAACGATCTTCATGTACGTGTTCCTCTCGGGTCTCGGCCTGCTATTGGTCATCGGTCTTCATCAGCTGCTTGAATCACGCAAGatgAGACGGCCTGCAGCTAAAGTGGAGATGGACACATCCAACCACAATGATGTGGACATGAGCTGGATCCCACAAGAAACACTCAACCAGATCAGTGAGTCTTAGCCAA

Function

symbol description
ssr1 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; fin; hatching gland; periderm; and polster. Orthologous to human SSR1 (signal sequence receptor subunit 1).

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-030826-28 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; fin; hatching gland; periderm; and polster. Orthologous to human SSR1 (signal sequence receptor subunit 1).

Ensembl:

ensembl_id ENSDARG00000101627

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046774 True 885 mRNA 0.55 7 42081728 42090635

Neighbor

gene id symbol gene type direction distance location
XLOC_023731 ppp4r1 coding downstream 8842 42060967 ~ 42072886 (-)
XLOC_023730 NA coding downstream 142951 41937199 ~ 41938777 (-)
XLOC_023729 NA coding downstream 154561 41923786 ~ 41927167 (-)
XLOC_023728 CABZ01081282.1 coding downstream 254906 41826706 ~ 41826822 (-)
XLOC_023727 arhgap28 coding downstream 284047 41786274 ~ 41797681 (-)
XLOC_023733 NA coding upstream 574 42091209 ~ 42094078 (-)
XLOC_023734 pigm coding upstream 11569 42102204 ~ 42108655 (-)
XLOC_023735 NA coding upstream 44416 42135051 ~ 42141140 (-)
XLOC_023736 rmdn1 coding upstream 50678 42141313 ~ 42150116 (-)
XLOC_023737 NA coding upstream 77379 42168014 ~ 42170743 (-)
XLOC_023665 dre-mir-735 misc downstream 3903701 38177961 ~ 38178027 (-)
XLOC_023723 NA non-coding downstream 621604 41446548 ~ 41460124 (-)
XLOC_023722 NA non-coding downstream 666891 41407032 ~ 41414837 (-)
XLOC_023738 NA non-coding upstream 80391 42171026 ~ 42172918 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000140_00151588_00156780 NA coding CI01000140 null 151588 ~ 157038 (+)
bowfin (Amia calva) AMCG00019774 ssr1 coding CM030124.1 CM030124.1 44046687 ~ 44056603 (-)