XLOC_023736 (rmdn1)


Basic Information

Item Value
gene id XLOC_023736
gene name rmdn1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42141313 ~ 42150116 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046776
ACTTTACGGCAGAGTATGTCGACATCGCTGGAGTTAAAGGCGAACTTTAGCCTCGAAGCTGATCTGGAacatctcacacacactcacactcacacactctgtctcacacacacctgctctgATGGCGAACGCGGCTTTATTCGGAGCTTTCAGGCGCTTTATGAGCAGAAATGTGAAGATCTGGAGAAGCAATGAGCGCGTCTGGGCGGAGAGAGTCCGAGCTTcaagcagGAAGGGTGTAGTGCTGTTGGCTGTAACTCCTCTGTCATACCTGATCTACCAGAGAGTGTCTCGTCTCGCTCCGGTGTGTGCGCTGAACTCAGCTGAAGAGATTCTAGAACAAGCAGATTACCTGTACAGCTGCGGAGAAACACAGAAGCTGCACCAACTGCTGGACAAACACAGAGACAGtggTGACGCAGAGTTCCTGTGGCGTCTGGCGCGTGTGTGTCGTGATCTGGCTCTCCTGTCATCCGCGGAAGAGAAGCGGCGTCTGACGTACGAAGCGTTTCAGTACGCCACCGCCGCGCTGCAGAGAGACGAGCAGTGCTACGCTGCGCACAAAtggtTCGCCATCTGCCTCAGTGATGTGGGCGATTATGAGGGCATCAAAGTGAAGATTGGAAACTCCTACATCATCAGAGAACACCTGGAGAGGGCCATCCAGCTGAACCCACGGGATGCAACGTCTATACACATCCTGGGCTTCTGGTGTTTTGCCTTCGCTGAGTTGCCGTGGTATCAGCGTAAGGTGGCAGCGGTGATCTTCGGTTCTCCTCCAACAGCCACATATGAAGAGGCTCTAGAGTTCTTCCTGAGAGCTGAAGAAGtggAGCCCAGTTTCTACAGTAAGAACCTGCTGATGCTGGGGAAGACCTACATGATGCTGCGGGACGTCCAGCAGGCGGCGCTGTGGCTCACCAAAGCCAGAGACTATCCTGCAGTCACAGAGGAAGACCGACAGGTCCACCAGGAGGCGCAGGAGCTGCTGAAGAGGCTCGgtgtgtgacacacacacacacacacacaccagcatcctcctcctcctccactctAGAGATTTGTTACGCACTGATGAACTGTTTAATGTGTGTCTGTGCACACGACTACTGCAGCACTCTGACATCTGACACACACACTGAGGGTCTCTCAGCAGTAACACACACtctgagggtgtgtgtgtgtgtgatgtttagCAGGGTGTGGGGACCAGAGTCAGCTCTCTCTGTATTACTGCAATAAAGACATCTAGATTATATACA
>TCONS_00046777
AGCTTTAGCGTATATAAACTCGGTCATCTCTGATATTCCCGCGCTGTTTCTCCGagcagGAAGGGTGTAGTGCTGTTGGCTGTAACTCCTCTGTCATACCTGATCTACCAGAGAGTGTCTCGTCTCGCTCCGGTGTGTGCGCTGAACTCAGCTGAAGAGATTCTAGAACAAGCAGATTACCTGTACAGCTGCGGAGAAACACAGAAGCTGCACCAACTGCTGGACAAACACAGAGACAGtggTGACGCAGAGTTCCTGTGGCGTCTGGCGCGTGTGTGTCGTGATCTGGCTCTCCTGTCATCCGCGGAAGAGAAGCGGCGTCTGACGTACGAAGCGTTTCAGTACGCCACCGCCGCGCTGCAGAGAGACGAGCAGTGCTACGCTGCGCACAAAGTGTTTTGCCTTCGCTGAGTTGCCGTGGTATCAGCGTAAGGTGGCAGCGGTGATCTTCGGTTCTCCTCCAACAGCCACATATGAAGAGtggAGCCCAGTTTCTACAGTAAGAACCTGCTGATGCTGGGGAAGACCTACATGATGCTGCGGGACGTCCAGCAGGCGGCGCTGTGGCTCACCAAAGCCAGAGACTATCCTGCAGTCACAGAGGAAGACCGACAGGTCCACCAGGAGGCGCAGGAGCTGCTGAAGAGGCTCGgtgtgtgacacacacacacacacacacaccagcatcctcctcctcctccactctAGAGATTTGTTACGCACTGATGAACTGTTTAATGTGTGTCTGTGCACACGACTACTGCAGCACTCTGACATCTGACACACACACTGAGGGTCTCTCAGCAGTAACACACACtctgagggtgtgtgtgtgtgtgatg
>TCONS_00046778
agtttggtgacccctgctccaCAGAGTCTCGGGCTGGATTCTGTGAGAGCAGCTCAGACAGATCCAACACTTCATTATTTAGAATTAGAGATATTCAGGAAATGCTTTCATAAAACATGTGGAGGATCCAGAAACAGCAGCAGATTACTGCATTACTCCAACAGAACACTGACAGAGTGATCGAGCGCTCTACAGTGGACATGTGGAGCTGAGCCGGGTCACCGATGAGCTCTGATCATACCTGCCGGACACACGGGTCAGGTGTACTGAAGACTCTCCGCAGGCTCACCGGTGAACAGACTGAGAGCGGGTTAAAGGGGTTTTTATGGGTCTAAACGGTTTCTTTATGCAGCTGAATGCAGTGCAGGGCGGTGATGGTTCTTCTTCCCCAGTATAAGTGACGGTTTGGACTGGATGCAGCCTGGATCTGCTGTTTCGGTTCTGCTTTGTCTCTTTATTCCTCTCAGCTTCAGTTCTGATGGGGAACATCACCGTCATGACTACAGTAAAGGTGTACAGCGagcagGAAGGGTGTAGTGCTGTTGGCTGTAACTCCTCTGTCATACCTGATCTACCAGAGAGTGTCTCGTCTCGCTCCGGTGTGTGCGCTGAACTCAGCTGAAGAGATTCTAGAACAAGCAGATTACCTGTACAGCTGCGGAGAAACACAGAAGCTGCACCAACTGCTGGACAAACACAGAGACAGtggTGACGCAGAGTTCCTGTGGCGTCTGGCGCGTGTGTGTCGTGATCTGGCTCTCCTGTCATCCGCGGAAGAGAAGCGGCGTCTGACGTACGAAGCGTTTCAGTACGCCACCGCCGCGCTGCAGAGAGACGAGCAGTGCTACGCTGCGCACAAAtggtTCGCCATCTGCCTCAGTGATGTGGGCGATTATGAGGGCATCAAAGTGAAGATTGGAAACTCCTACATCATCAGAGAACACCTGGAGGTAAGAG

Function

symbol description
rmdn1 Predicted to enable microtubule binding activity. Predicted to be active in cytoplasm; mitotic spindle pole; and spindle microtubule. Orthologous to human RMDN1 (regulator of microtubule dynamics 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070928-17 Predicted to enable microtubule binding activity. Predicted to be active in cytoplasm; mitotic spindle pole; and spindle microtubule. Orthologous to human RMDN1 (regulator of microtubule dynamics 1).

Ensembl:

ensembl_id ENSDARG00000074507

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046776 False 1262 mRNA 0.53 10 42141313 42148339
TCONS_00046777 False 842 processed_transcript 0.55 7 42141384 42150116
TCONS_00046778 True 957 processed_transcript 0.52 5 42146513 42149186

Neighbor

gene id symbol gene type direction distance location
XLOC_023735 NA coding downstream 173 42135051 ~ 42141140 (-)
XLOC_023734 pigm coding downstream 32658 42102204 ~ 42108655 (-)
XLOC_023733 NA coding downstream 47235 42091209 ~ 42094078 (-)
XLOC_023732 ssr1 coding downstream 50678 42081728 ~ 42090635 (-)
XLOC_023731 ppp4r1 coding downstream 68427 42060967 ~ 42072886 (-)
XLOC_023737 NA coding upstream 17898 42168014 ~ 42170743 (-)
XLOC_023738 NA coding upstream 20910 42171026 ~ 42172918 (-)
XLOC_023665 dre-mir-735 misc downstream 3963286 38177961 ~ 38178027 (-)
XLOC_023730 NA non-coding downstream 202536 41937199 ~ 41938777 (-)
XLOC_023729 NA non-coding downstream 214146 41923786 ~ 41927167 (-)
XLOC_023728 CABZ01081282.1 non-coding downstream 314491 41826706 ~ 41826822 (-)

Expression


Co-expression Network