XLOC_023737


Basic Information

Item Value
gene id XLOC_023737
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42168014 ~ 42170743 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047279
tctaaagcaacagctagatgacgatgatgagatctaaagcaacagctagatcaAGACGACTagatgacgatgagatctaaCAACAGCTAAATGACGATGAGATCTAACAGCTACATGAGACTAGAtgacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgacgagatctaaagcaacagctagatgaagacgactagATGATGATGAGATCTAACAACAGCTAAATGACTATGAGATCTAACAGCTACATGAGACTagatgacgatgagatctaaaACAACAGCTAGATGACGACGACGATGACGACaactaaagcaacagctagatgataacgacgagatctaaagcaacagctagatcaAGACGACTagatgacgatgagatctaaaACAGCTAGAAGACGACGGCTAAatgacgatgagatctaaagcaacaccTAGATGAATACGACAGCTAGATGACAACAACCTTTAAAACCACGGCTAGATGATAACACCTACATGACATCTAAAAACCCTAAAAGACATCTAAAACAACGCCTAGATGTCAATGCCTAGAAGATGACAATGAAACCTAGGCATTGTTTCATGTCTTCTAGATGACGATGATGCCCAAGAGGACAACAACACCTAGATTCCATCTAAACACAACCTAAAAGATGACAGCCTAAAAATACACATCTACATGATGACATCTAAAACAGCAACAACATCTATAAGATACAATGCCTAGAAGACAGAACATTACCTGGAAGACAATGACATTTACAACTCAACACCTAGAACTTGACAACGCTATTAAGACCACACCTAGAACTAGAGAACAGCTAGAACTAAATACCTGGAGAAATGTAGTAGAGTGTATGCAGTGTTGGTGAACAATGTGCTGTTGTGTGGAGGTGCTAATCACCAGTAGAAGATTGGGCATCATTTAAGGCCTGTTCGCCCCAGGCCACCGTCCCTGCGTGCTGTCCAAGTGGACCCAGGGGGGCTGAATACTTACCACTCCCCCAAGTGACCTTTTGTTAACACCGCAAGGTTTCCCAGGTCACCCGAGAAGAGTCTGCAGAAATCTCTATGGGGCCTACTCTGTCTAATGCAGAGACTGCTCCCAAGAACCCCAGATTTCTCCAGGGTAAATGAGAACCCTTGCCCAAATCAGCTGAATCCCACAAGTGGTCTCAGGTAAAAGAGTTGGCCACAAACCATTCGATGCCACCTCCTCTACCATTGCTGATTTACTCTAAAATACTTCTGGTCAACATCTAGGAAGTTCAAAGAAAATTCCCAAATGTGATCAGAGGCATCAAGAGAATGAGTCCTGACACTCCATGCCTGCAAGTGTCAGATCGAGGATCAAACTGGCGGTTACATTCCAGAAAATGTAACAAGCTTCTACCAGCTTTTGCCTCTAGGGATAATGCAAGAACCAAACCGACATCATCCTCATAGAGAACAACCGTTGGGAGCATTAACCCT
>TCONS_00047280
AtgacgacgagatctaaagcaacagctagatgaagacgactagatgacgatgagatctaaagcaacagctagatgaagacgactagATGACAACGAGATCTAACAACAGCTAAATGAggacgacgagatctaaagcaacagctagatgaagacgactagatgacgatgagatctaaCAGCTAAATGAGACTagatgacgatgagatctaaaACAACAGCTAGATGACGACGACGATGACGACaactaaagcaacagctagatgataacgacgagatctaaagcaacagctagatcaAGACGACTagatgacgatgagatctaaaACAGCTAGAAGACGACGGCTAAatgacgatgagatctaaagcaacaccTAGATGAATACGACAGCTAGATGACAACAACCTTTAAAACCACGGCTAGATGATAACACCTACATGACATCTAAAAACCCTAAAAGACATCTAAAACAACGCCTAGATGTCAATGCCTAGAAGATGACAATGAAACCTAGGCATTGTTTCATGTCTTCTAGATGACGATGATGCCCAAGAGGACAACAACACCTAGATTCCATCTAAACACAACCTAAAAGATGACAGCCTAAAAATACACATCTACATGATGACATCTAAAACAGCAACAACATCTATAAGATACAATGCCTAGAAGACAGAACATTACCTGGAAGACAATGACATTTACAACTCAACACCTAGAACTTGACAACGCTATTAAGACCACACCTAGAACTAGAGAACAGCTAGAACTAAATACCTGGAGAAATGTAGTAGAGTGTATGCAGTGTTGGTGAACAATGTGCTGTTGTGTGGAGGTGCTAATCACCAGTAGAAGATTGGGCATCATTTAAGGCCTGTTCGCCCCAGGCCACCGTCCCTGCGTGCTGTCCAAGTGGACCCAGGGGGGCTGAATACTTACCACTCCCCCAAGTGACCTTTTGTTAACACCGCAAGGTTTCCCAGGTCACCCGAGAAGAGTCTGCAGAAATCTCTATGGGGCCTACTCTGTCTAATGCAGAGACTGCTCCCAAGAACCCCAGATTTCTCCAGGGTAAATGAGAACCCTTGCCCAAATCAGCTGAATCCCACAAGTGGTCTCAGGTAAAAGAGTTGGCCACAAACCATTCGATGCCACCTCCTCTACCATTGCTGATTTACTCTAAAATACTTCTGGTCAACATCTAGGAAGTTCAAAGAAAATTCCCAAATGTGATCAGAGGCATCAAGAGAATGAGTCCTGACACTCCATGCCTGCAAGTGTCAGATCGAGGATCAAACTGGCGGTTACATTCCAGAAAATGTAACAAGCTTCTACCAGCTTTTGCCTCTAGGGATAATGCAAGAACCAAACCGACATCATCCTCATAGAGAACAACCGTTGGGAGCATTAACCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047279 False 2056 lncRNA 0.43 1 42168014 42170069
TCONS_00047280 True 1413 lncRNA 0.44 2 42168014 42170743

Neighbor

gene id symbol gene type direction distance location
XLOC_023736 rmdn1 coding downstream 17898 42141313 ~ 42150116 (-)
XLOC_023735 NA coding downstream 26874 42135051 ~ 42141140 (-)
XLOC_023734 pigm coding downstream 59359 42102204 ~ 42108655 (-)
XLOC_023733 NA coding downstream 73936 42091209 ~ 42094078 (-)
XLOC_023732 ssr1 coding downstream 77379 42081728 ~ 42090635 (-)
XLOC_023738 NA coding upstream 283 42171026 ~ 42172918 (-)
XLOC_023665 dre-mir-735 misc downstream 3989987 38177961 ~ 38178027 (-)
XLOC_023730 NA non-coding downstream 229237 41937199 ~ 41938777 (-)
XLOC_023729 NA non-coding downstream 240847 41923786 ~ 41927167 (-)
XLOC_023728 CABZ01081282.1 non-coding downstream 341192 41826706 ~ 41826822 (-)

Expression


Co-expression Network