G462037


Basic Information

Item Value
gene id G462037
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 98832457 ~ 98834433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU523975
ttacctggtacccagtgtatataaccatgttattacctggtaccctgtgtttaCTGCCAAGTTGTtactcattttttatttattatttttcaattttttctctgcattgttcTAAAGGACCCTTCAGTCAGCATTCCActgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcatttcactgttagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggag
>TU523972
agtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggag
>TU523973
cagtctacacctgttgtttacggagCATTTCTCtgtaagtctacacctgttgtttacggagcatttcactgttagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtaattctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagCATTTCTCtgtaagtctacacctgttgtttacggagcatttcactgttagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtaagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagCATTTCTCtgtaagtctacacctgttgtttacggagcatttcactgttagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtaagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagCATTTCTCtgtaagtctacacctgttgtttacggagcatttcactgttagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtaagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagGATTCCActgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttactgaGCATTCCACTGTCAGTCTACGCCTGTTGTTtacggagcatgtgacaa
>TU523976
tttcactgtaagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagGATTCCActgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacggagcatttcactgtcagtctacacctgttgtttacggagcattccactgtcagtctacacctgttgtttacgaagcattccactgtcagtctacacctgttgtttactgaGCATTCCACTGTCAGTCTACGCCTGTTGTTtacggagcatgtgacaa

Function

NR:

description
PREDICTED: serine/arginine repetitive matrix protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU523975 False 455 TUCP 0.42 1 98832457 98832911
TU523972 False 240 lncRNA 0.46 1 98832672 98832911
TU523973 False 1439 lncRNA 0.45 1 98832995 98834433
TU523976 True 584 lncRNA 0.45 1 98833850 98834433

Neighbor

gene id symbol gene type direction distance location
oca2 LOC106591054 coding upstream 390407 98276682 ~ 98442265 (+)
herc2 herc2 coding upstream 583783 97997425 ~ 98248889 (+)
LOC110524889 LOC106590724 coding upstream 864752 97888379 ~ 97967920 (+)
LOC118964703 NA coding upstream 870379 97960504 ~ 97962293 (+)
gtpbp6 gtpbp6 coding upstream 1077517 97715395 ~ 97755155 (+)
LOC110523047 LOC106560665 coding downstream 226944 99061377 ~ 99101070 (+)
LOC110524867 bivm coding downstream 325473 99159906 ~ 99178822 (+)
LOC110523045 NA coding downstream 361907 99196283 ~ 99207807 (+)
LOC110490602 LOC106560622 coding downstream 539722 99374155 ~ 99401558 (+)
LOC118964709 NA coding downstream 1311170 100145603 ~ 100157146 (+)
G462035 NA non-coding upstream 2680 98828730 ~ 98829992 (+)
G462036 NA non-coding upstream 4480 98827785 ~ 98828192 (+)
G461995 NA non-coding upstream 25861 98777918 ~ 98806811 (+)
G461996 NA non-coding upstream 27502 98761509 ~ 98805170 (+)
G462038 LOC106560669 non-coding downstream 1220 98835653 ~ 98840171 (+)
G462040 NA non-coding downstream 10191 98844624 ~ 98845135 (+)
G462056 NA non-coding downstream 36942 98871375 ~ 98873995 (+)
G462058 NA non-coding downstream 39705 98874138 ~ 98877622 (+)
G462059 NA non-coding downstream 40082 98874515 ~ 98877751 (+)
G461999 NA other upstream 53605 98774482 ~ 98779067 (+)
G461826 NA other upstream 155609 98674256 ~ 98677063 (+)
G461827 NA other upstream 156673 98675132 ~ 98675999 (+)
G461121 jade3 other upstream 1016699 97812808 ~ 97815973 (+)
G460428 NA other upstream 1909860 96922332 ~ 96922812 (+)
G462233 NA other downstream 224450 99058883 ~ 99059354 (+)
G462549 NA other downstream 648950 99483383 ~ 99483960 (+)
G462762 NA other downstream 1232136 100050135 ~ 100089049 (+)
G463119 NA other downstream 1336704 100171137 ~ 100171897 (+)
G461997 NA non-coding upstream 34895 98777364 ~ 98797562 (+)

Expression


Co-expression Network