G463404 (chd1l)


Basic Information

Item Value
gene id G463404
gene name chd1l
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 100694327 ~ 100698633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU525878
GAAGAGACCACCTCTACCCCACCGGCCAGAGTCATCAACACAGTGCACTATGATGGCATCTTCCTGGTTGGCGTAGGGGTGTGTGACATCGCCCAACACGTAACTAATAGCAGAGTGTTCTGAATCTGTAGAGGTCACACTGAGGTCatcagcctcctcctcctcctcgctctccaCAGAGGGTAAACACAGGGACCTGTACCCACTGGACTCCCACCATACCATCTTCTTCCTGTGTTTGTTCTCCTGTAGTCTCCTCCTCTTGTCCTCCTGTACTCTGGCCCTCTTAGCTGcagcctcctccctctctttcaggtCAGTCTCAGTCAAGGCCTTCCTCTTCCTCATGGGGGCCAACATGGGCCCGGACAGACACACTTCATCGTTGTGTCGTGTCgctcgtctctctcctcctcctcctcctgcctcttcCTCCAGGAGACGACTGAAGGTCCTCTGGTCCTCAGAGCTCACCTCCCGGGAGTAATCCCTCCCTTCAAAGTAGTACATGTGgtctggacagggagagagacagggacagagagagggacagg

Function

symbol description
chd1l Predicted to enable nucleotide binding activity. Predicted to be involved in cellular response to DNA damage stimulus and chromatin remodeling. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Orthologous to human CHD1L (chromodomain helicase DNA binding protein 1 like).

NR:

description
chromodomain-helicase-DNA-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU525878 True 554 lncRNA 0.56 4 100694327 100698633

Neighbor

gene id symbol gene type direction distance location
LOC118964711 NA coding upstream 27007 100666147 ~ 100667320 (+)
LOC110524909 LOC106921341 coding upstream 244549 100420267 ~ 100449778 (+)
LOC110524906 NA coding upstream 467979 100224211 ~ 100226348 (+)
si:ch211-121a2.4 LOC106560711 coding upstream 503162 100182927 ~ 100191165 (+)
LOC118964709 NA coding upstream 537181 100145603 ~ 100157146 (+)
G463350 NA non-coding upstream 81583 100611666 ~ 100612744 (+)
G463346 NA non-coding upstream 85728 100600669 ~ 100608599 (+)
G463348 NA non-coding upstream 87631 100604287 ~ 100606696 (+)
G463344 NA non-coding upstream 95621 100597603 ~ 100598706 (+)
G463339 NA non-coding upstream 104519 100589534 ~ 100589808 (+)
G463408 NA non-coding downstream 7027 100705660 ~ 100706209 (+)
G463422 NA non-coding downstream 39685 100738318 ~ 100757844 (+)
G463423 NA non-coding downstream 69736 100768369 ~ 100775358 (+)
G463426 NA non-coding downstream 75223 100773856 ~ 100779014 (+)
G463269 NA other upstream 211573 100479621 ~ 100482754 (+)
G463164 NA other upstream 402733 100269561 ~ 100291594 (+)
G463139 NA other upstream 464154 100226504 ~ 100230232 (+)
G463119 NA other upstream 522430 100171137 ~ 100171897 (+)
G462762 NA other upstream 608323 100050135 ~ 100089049 (+)

Expression


Co-expression Network