LOC110525134


Basic Information

Item Value
gene id LOC110525134
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 551781 ~ 554254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605078.2
TACTTTTCATTTTATCTTAAGTTCATGACGTCTTCTGTAGTTTTCATCCCCTCCCACCCCTGGTTCAGATCCCGTCAGgcggagacagagagggaccagGCAGGGGAGGATAATAGAATGTTCAAACAGGAGTTTGGAGAGAAGATAGACGCTCTACAGCTGGAGGTGGAACATCTCAGGAAACACAGGTCATGTTTGGAGCTGGagctgaggagagggaggggtagtgGTGGAGGTAGCCAGTATATAGAGCCTGTGTCTGGGGAGAAGTTGACCTCGGCCCCCCAGAGAGACCTGGAAGACATCCGGAAGGAACTGGAGGCAGTGAAGAAGGAGAATCATCAACTATGTGCTGTGGTAGATGACACGAGCGGTCCAGGGTCCAACATGTCAATGTCACAAAATGAGGATGAGCAGGAGGAGTCTTGTCTTGATCAGCCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGatgtctgtcttcctctgacaTAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGATGTCTGACATAATGACTTCCTCAAACTGAAGGGTTTCACTGACCATGTCTCAATCTAGTTGACATGATCCTCCCCCTGAGCTCCTCTAATGTCTCAACTGGTTACTGAAAATAAGCTCTGCCTTAAAACAGAAGGATTTAACTCCTTCTATAGAGCCAGGGTGTTCTATGACAGCTGTCTGGCCAATGGGCTGCCCCTCCCCTCCGTCAACATATATGTGACTCCTGCCAACGCAGCAGTACACACCCAGCCCTGCCTGAGAGAGACACCAAACGTTcaaagcctggtcccagatctgtgcggggggggtggggggttggtAGAAA

Function

NR:

description
RUN and FYVE domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605078.2 True 997 mRNA 0.49 5 551781 554254

Neighbor

gene id symbol gene type direction distance location
LOC110525138 rufy3 coding upstream 1882 442716 ~ 549899 (+)
LOC118964801 NA coding upstream 6077 543104 ~ 545704 (+)
LOC118964800 LOC105008036 coding upstream 475917 56073 ~ 77877 (+)
LOC118964799 isca1 coding upstream 502780 43896 ~ 52580 (+)
LOC118964804 NA coding downstream 910 555164 ~ 555893 (+)
tars1 LOC106585996 coding downstream 10023 564277 ~ 602519 (+)
slc4a4a LOC101484802 coding downstream 221410 775664 ~ 1118589 (+)
LOC118964805 NA coding downstream 442775 997029 ~ 1002288 (+)
LOC110525062 LOC106570947 coding downstream 1447834 2002088 ~ 2105141 (+)
G464120 NA non-coding upstream 17388 533938 ~ 534393 (+)
G464092 NA non-coding upstream 96691 454317 ~ 455090 (+)
G463893 NA non-coding upstream 112859 438576 ~ 438922 (+)
G463894 NA non-coding upstream 113460 437649 ~ 438321 (+)
G463892 NA non-coding upstream 114618 436884 ~ 437163 (+)
G464067 NA non-coding downstream 13396 567650 ~ 570254 (+)
G464126 NA non-coding downstream 39073 593327 ~ 599273 (+)
G464132 NA non-coding downstream 52143 606397 ~ 608103 (+)
G464138 NA non-coding downstream 60866 615120 ~ 615541 (+)
G464154 NA non-coding downstream 88634 642888 ~ 643281 (+)
G463813 NA other upstream 283630 265409 ~ 268151 (+)
G464705 NA other downstream 674451 1228705 ~ 1229099 (+)
G465203 NA other downstream 1508074 2062328 ~ 2064067 (+)
zfr zfr other downstream 1845507 2342330 ~ 2451362 (+)
G465355 NA other downstream 1850865 2405119 ~ 2406090 (+)
LOC110525071 LOC106585963 other downstream 2251129 2743964 ~ 2866482 (+)

Expression

LOC110525134 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110525134 Expression in each Bioproject

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LOC110525134 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network