LOC110516346


Basic Information

Item Value
gene id LOC110516346
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 2723765 ~ 2724931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051983.1
CCGTAACGTGTCCCGGACCGCCCACATTCTATAAAGGCAGAGATCGGCTCCTTACTATTATTATCTCTATCAACAACAAGATAAACTGTACTCACTTCTGATTTAGCTTACTGCTGTCTAGAAGTCACACTGAGCTATAGCCTACTCAAAGCTATACGAACAACTATACAGCTATAAAAGAAGCAAGCCGCAAAACGCAGCCATGAAGCTCGAATCAAGAAAATCCTCACTGAAAAGAACTGAGAGCCAGAAAGAGACCGTACCAAACAAAGATCAGAAAGCCATCATGGAATGTGCGCACCATCTGCGTAAAATCGGAGACCTGTTCAACCTGAAATACATCCTGGCGGATATGCTAGCTAAAATCTCAACGGATCCGAAAATCAAGTGAAATGGATACAGTAGCTGACTTTGATAGTAAAGTGGATCGAAATTGGATCATTATGCCTTAACGGGAAATGTGTTGCGGTCGTTGCAATGTGAAAAGTTTGTTACAATAACGCAAAGCCAATATGGACCTCACACGCCCATGCCCGGAGCTAGGCTACTCTCGGACCGGAGTATCTTTCTGGACGCTCCTTCAACAGAGACTGCCTTCTACGCCCCGGGACGCTGGTGGGTATTTGTCCATAGTCTAAGAGATATATACCACCGCCCTATTGGATTATTTAGGCCGGGAAAATGAAAACGGGCCGGGAAGCCGACACAGAACATTtggagtaaagaggagacaggatagCAAACCAACAAGTAGCCTAAAATAGAGACTAAAAAAAATCTGTTATTAAACGTTTGATTCTAATCGTCAGGGTATTTTATGCTGTCTGTTTTAAATTTGTTTGGTGATTGATTTATGCTTATCTGTTTGGAAATAATTTTATGCTGTCAAGTTTGTTGGGTGATTTAATATTTGCTTATTGTTTGAAAATAATTTTATGCTGTCTGTTTTAAGTTTGTTTGGTGATTTAAGATTTACTTATTTGTTTGAATATAATGTCAATAAATGTTTTGATTTCTTCTATTGTCA
>TU528654
ACAACAAGATAAACTGTACTCACTTCTGATTTAGCTTACTGCTGTCTAGAAGTCACACTGAGCTATAGCCTACTCAAAGCTATACGAACAACTATACAGCTATAAAAGAAGCAAGCCGCAAAACGCAGCCATGAAGCTCGAATCAAGAAAATCCTCACTGAAAAGAACTGAGAGCCAGAAAGAGACCGTACCAAACAAAGATCAGAAAGCCATCATGGAATGTGCGCACCATCTGCGTAAAATCGGAGACCTGTTCAACCTGAAATACATCCTGGCGGATATGCTAGCTAAAATCTCAACGGATCCGAAAATCAAGTGAAATGGATACAGTAGCTGACTTTGATAGTAAAGTGGATCGAAATTGGATCATTATGCCTTAACGGGAAATGTGTTGCGGTCGTTGCAATGTGAAAAGTTTGTTACAATAACGCAAAGCCAATATGGACCTCACACGCCCATGCCCGGAGCTAGGCTACTCTCGGACCGGAGTATCTTTCTGGACGCTCCTTCAACAGAGACTGCCTTCTACGCCCCGGGACGCTGGTGGGTATTTGTCCATAGTCTAAGAGATATATACCACCGCCCTATTGGATTATTTAGGCCGGGAAAATGAAAACGGGCCGGGAAGCCGACACAGAACATTtggagtaaagaggagacaggatagCAAACCAACAAGTAGCCTAAAATAGAGACTAAAAAAAATCTGTTATTAAACGTTTGATTCTAATCGTCAGGGTATTTTATGCTGTCTGTTTTAAATTTGTTTGGTGATTGATTTATGCTTATCTGTTTGGAAATAATTTTATGCTGTCAAGTTTGTTGGGTGATTTAATATTTGCTTATTGTTTGAAAATAATTTTATGCTGTCTGTTTTAAGTTTGTTTGGTGATTT
>TU528655
ACAACAAGATAAACTGTACTCACTTCTGATTTAGCTTACTGCTGTCTAGAAGTCACACTGAGCTATAGCCTACTCAAAGCTATACGAACAACTATACAGCTATAAAAGAAGCAAGCCGCAAAACGCAGCCATGAAGCTCGAATCAAGAAAATCCTCACTGAAAAGAACTGAGAGCCAGAAAGAGACCGTACCAAACAAAGATCAGAAAGCCATCATGGAATGTGCGCACCATCTGCGTAAAATCGGAGACCTGTTCAACCTGAAATACATCCTGGCGGATATGCTAGCTAAAATCTCAACGGATCCGAAAATCAAGTGAAATGGATACAGTAGCTGACTTTGATAGTAAAGTGGATCGAAATTGGATCATTATGCCTTAACGGGAAATGTGTTGCGGTCGTTGCAATGTGAAAAGTTTGTTACAATAACGCAAAGCCAATATGGACCTCACACGCCCATGCCCGGAGCTAGGCTACTCTCGGACCGGAGTATCTTTCTGGACGCTCCTTCAACAGAGACTGCCTTCTACGCCCCGGGACGCTGGTGGGTATTTGTCCATAGTCTAAGAGATATATACCACCGCCCTATTGGATTATTTAGGCCGGGAAAATGAAAACGGGCCGGGAAGCCGACACAGAACATTtggagtaaagaggagacaggatagCAAACCAACAAGTAGCCTAAAATAGAGACTAAAAAAAATCTGTTATTAAACGTTTGATTCTAATCGTCAGGGTATTTTATGCTGTCTGTTTTAAATTTGTTTGGTGATTGATTTATGCTTATCTGTTTGGAAATAATTTTATGCTGTCTGTTTTAAGTTTGTTTGGTGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051983.1 False 1027 mRNA 0.40 2 2723765 2724931
TU528654 False 895 lncRNA 0.41 2 2723837 2724871
TU528655 True 839 lncRNA 0.42 3 2723837 2724871

Neighbor

gene id symbol gene type direction distance location
pdzd2 pdzd2 coding upstream 9465 2553211 ~ 2714300 (+)
LOC110525158 LOC106570936 coding upstream 234526 2466474 ~ 2489239 (+)
mtmr12 mtmr12 coding upstream 277295 2410231 ~ 2446470 (+)
zfr zfr coding upstream 314504 2342330 ~ 2451362 (+)
LOC110525063 LOC106570939 coding upstream 523871 2149240 ~ 2199894 (+)
LOC110525071 LOC106585963 coding downstream 19033 2743964 ~ 2866482 (+)
isl1 isl1 coding downstream 359750 3084681 ~ 3092690 (+)
fst fst coding downstream 738738 3463669 ~ 3491741 (+)
LOC118964791 NA coding downstream 815435 3540366 ~ 3542885 (+)
hspb3 hspb3 coding downstream 1093107 3818038 ~ 3823330 (+)
G465477 NA non-coding upstream 13906 2707112 ~ 2709859 (+)
G465461 NA non-coding upstream 46678 2676837 ~ 2677087 (+)
G465458 NA non-coding upstream 54031 2668743 ~ 2669734 (+)
G465454 NA non-coding upstream 66563 2656741 ~ 2657202 (+)
G465451 NA non-coding upstream 74492 2647261 ~ 2649273 (+)
G465499 NA non-coding downstream 26260 2751191 ~ 2751535 (+)
G465526 NA non-coding downstream 80967 2805898 ~ 2806263 (+)
G465527 NA non-coding downstream 82629 2807560 ~ 2809159 (+)
G465535 NA non-coding downstream 100586 2825517 ~ 2828010 (+)
G465539 NA non-coding downstream 117416 2842347 ~ 2984390 (+)
G465355 NA other upstream 317675 2405119 ~ 2406090 (+)
G465203 NA other upstream 659698 2062328 ~ 2064067 (+)
G464705 NA other upstream 1494666 1228705 ~ 1229099 (+)
LOC110525138 rufy3 other upstream 2264759 442716 ~ 549899 (+)
G465578 NA other downstream 253911 2978842 ~ 2982425 (+)
G466813 NA other downstream 1047933 3772864 ~ 3773340 (+)
G468732 NA other downstream 3383448 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 3469841 6194772 ~ 6199155 (+)

Expression


Co-expression Network