LOC118964791


Basic Information

Item Value
gene id LOC118964791
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 3540366 ~ 3542885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118964791
ATGCCTCTGCTGGACCAGCTAGTACTCAACATTCAGAAGCGCCGGTCCAGCCCACAGCAGCCAGCAAGCCTCTTGGGGGCCCCACAGCTGCCAGCCAGTCAGCCTCTCGATGGCCccacagcagtcagccagccTCTCGGGGGCCCCAaagaagccagccagccagccactcggCAGCTCCATACCACCAGCTCCAAACCACCAGTCTCCACACCACTACTCTCCACACCACCCCTCTCCACTCCACCAGTCTCCACTCCAACATTCTCCACACCACCCCTCTCCACTCCACCAGTCTCTACACCACCACAatccactccaccactctccacaccacccctctccacaccaccaAATTCCAcaccacccctctccacaccacctGTCTCCAcaccacccctctccacaccaccaGTATCCAcaccacccctctccacaccaccagtccctacactaccacactccactccaccagtctctacactaccacactccactccaccagtCTCCACACCACCAGTCTCTACACCACCACTCTCCACTCCACCATTCTCCACaccaccacactccactccaaCAGTCTCCACACCAACAGTGTCCACACCACCCTCTCCACTCCACCAGTCTCTACACCACCACTCTCCACTCCACCAATCTCTACACCACCAGTCTCCGCACCACCACACTCCACACCACCAGTCTCCGCACCACCACtctccactccaccactctccactccactactctccactccaccactctccaCTCCACCGGTCTCCACACAACCAGTCTCCACACCACCAGTCTCCACTCCACCAGTCTCCACTCCACCAGTCTCCACACCACCAGTCTCGACTCCACCAGTCTCCACTCCACCAGTCTCCACACCACCAgtctccactccaccactctccaCTCCACCAGTCTCCACACCACCAGCTGCACTCCACCATTCTCCACTCCACCATTCTCCACTCCACCAGTCTCCACTCCACCATTCTCCACTCAACCAGTCTCCACTCAACCAGTCTCCAATCCACCAGTCTCCACTCCACCAGTCTCCACTCCaacacactccactccaccagtCTCCATGCCATCAGTCTCCACCTCACCAGTCTCCACTCCACCAGTCTCCACTCCACCAgtctccactccaccacactccaATCCACCAGTCTCCACTCCATCAgtctccactccaccactctaCACTCCACCAGTCTCCACTCCACCAGTCTCCACTCCACCACATTCCACTCCAACAgtctccactccaccactctccactccaccactctccactccaccacactccactccaccagtctccacactccactccaccagtCTCCACTCCACCATTCTCCACTCCACCAGTCTCCAATCCACCAGTCTCCACTCCACCATTCTCCACTCCACCACATTCCACTCCACCAGTCTCCATGCCATCAGTCTCCACCTCACCAGTCTCCACTCCACCAGTCTCCACTCCACCAgtctccactccaccactctaCACTCCACCAGTCTCCACTCCACCAgtctccactccaccacactccactccaacagtctccactccaccactctccactccaccactctccactccaccacactccactccaccagtctcttctccaccacactccactccaccacactccactccaccagtctctactccaccacactccactcGACCACAAtccactccaccacactccactccaccagtCTCCACTCCACCAgtctccactccaccactctccactccaccactctccactccaccacactccactccaccagtctccactccaccacactccactccaccagtctccactccaccacactccactccaccagtCTCCACTTCACCAGTCTCCACTCCACCAgtctccactccaccactctccactccaccacactccactccaccacactccactccaccagtctctactccaccacactccactcGACCACAAtccactccaccacactccactccaccagtctccactccaccactctccactccaccactctccaCTCCACCATTCTCCCAATCACTCTTTATCCTCCAAGTAGCATTGACCTCTTAGGTGTCAGAAATATGGACACGCTTTCAGATGACGGAGACTTTGCCAGTCTTTCCTTTCTCCTcggccccttctctctcttaagCCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118964791 True 2202 mRNA 0.58 2 3540366 3542885

Neighbor

gene id symbol gene type direction distance location
fst fst coding upstream 48625 3463669 ~ 3491741 (+)
isl1 isl1 coding upstream 447676 3084681 ~ 3092690 (+)
LOC110525071 LOC106585963 coding upstream 673884 2743964 ~ 2866482 (+)
LOC110516346 NA coding upstream 815435 2723765 ~ 2724931 (+)
pdzd2 pdzd2 coding upstream 826066 2553211 ~ 2714300 (+)
hspb3 hspb3 coding downstream 275153 3818038 ~ 3823330 (+)
LOC110513046 snx18 coding downstream 284285 3827170 ~ 3866575 (+)
LOC110525164 LOC106585954 coding downstream 453248 3996133 ~ 4032894 (+)
LOC110525165 LOC105014571 coding downstream 506592 4049477 ~ 4122404 (+)
LOC110511702 LOC106585945 coding downstream 600303 4143188 ~ 4325682 (+)
G466652 NA non-coding upstream 834 3539013 ~ 3539532 (+)
G466649 LOC100194703 non-coding upstream 2924 3537156 ~ 3537442 (+)
G466644 NA non-coding upstream 11309 3527935 ~ 3529057 (+)
G466645 NA non-coding upstream 11580 3528265 ~ 3528786 (+)
G466638 NA non-coding upstream 16782 3523273 ~ 3523584 (+)
G466656 NA non-coding downstream 444 3543329 ~ 3544778 (+)
G466664 NA non-coding downstream 10298 3553183 ~ 3553438 (+)
G466666 NA non-coding downstream 16176 3559061 ~ 3559321 (+)
G466668 NA non-coding downstream 17810 3560695 ~ 3563709 (+)
G466709 NA non-coding downstream 74532 3617417 ~ 3617887 (+)
G465578 NA other upstream 557941 2978842 ~ 2982425 (+)
zfr zfr other upstream 1131108 2342330 ~ 2451362 (+)
G465355 NA other upstream 1134276 2405119 ~ 2406090 (+)
G465203 NA other upstream 1476299 2062328 ~ 2064067 (+)
G466813 NA other downstream 229979 3772864 ~ 3773340 (+)
G468732 NA other downstream 2565494 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 2651887 6194772 ~ 6199155 (+)
G468755 NA other downstream 2667314 6210199 ~ 6244501 (+)
G468768 NA other downstream 2711591 6254476 ~ 6371873 (+)

Expression


Co-expression Network