hspb3 (hspb3)


Basic Information

Item Value
gene id hspb3
gene name hspb3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 3818038 ~ 3823330 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979222.1
TGCTGTCCTAAATATAGGCCATGGCCCGTCTTGATTTCATCTGACCGACTGTCAAACTCAGTGACTCAGTGCCACAGCAATATTACAAGAGGTTTTCAGACTGAGAGACTGCAAGCGACACGATCACAGACCCGCCAATCGCAATCCTCTGCTTTGCCATGGCGAtaaaagaaaaaaCAACACAAGAGGCTTTCTGGGACATGGATTGGGAGGAAGGCAGAACCATGGAGGGACTGTCTATAACCCACTGGGTGAACAGCCCAGTCCGCCACCAGGCCCTGTTCCAAGGAAGGGACTTGGACGACTGTGTGGAGGACCATGACCTGTTCGCCCTGCCCGGGCCAGCCTTCCCTGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTTGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTTGGGTAGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAAGCTAGAAGGGGTCTGCGACGATACTACCACAACCCAACCCCAGCGGACTCAGCCTGTTTACCAGGTGCTTCTGGACGTGTCCCAGTTCAGACCTGAGGATATCATGATTCAGGTGTTTGAGGGATGGCTCTTGATCAAGGCTCAGCATGGAGCCAGAATGGATGAACATGGGTTTGTTACCCGAAGCTTCACCCGTCAGTACCCACTGCCTGAGAAACTACAGCAGGCGGGGGGTCTGAGGGCTCTACTATGTCATGATGGGATACTGGTGGTGGAATCCAAACAGAGAACACCTGTTAGGATACAACACACTGAGGAGGACCCCTATtgattattgacttgattattgaCTCTTGATTATTGACTATTGATTATTGACTATTGATTATTGACTATTGATTATTGATTATTACTGTATTGATCAGGTAAAGATGAGGTCAGATCAGCTGTTACAGTACCACTAACATGAGTGATCGGTTCATTCATTGTGTCTGTTATTTTCGTGTGAAGTTAAATTTTCAAATATTTCTCTAAACATTGTTAttgttacatttctatctgacGCTACTTTGCTACAAAAAGCTGTTGGTGCTAACGTTATTGAATTATATAACAGCAGTAATGACATATTTAAAATCAATTTTCTTAAAATACGTTTTTTCCTCCTCGCTTTGAAAATTTACTCCAGCTCCTCTCacctcaatttaaaaaaaaaatgcttataATTTGAACAAATATGAAGTGTATATTTAATTTGGTAAATGGACAGAGAGAAGTTCCTCTCCAGTCATTGAAAACGTATCTATGACATAAATGGGAATGCTAAGCATGAGGCTTTCAGCATCAGTGACGATGTTGTTTTTACAGTACAAATTTTATGAGATTGTTTAGAAATTGTTCACTGTTGAAAGAAGATACTTAAAAATGCGATAGAACAATAAATATTGTTATCAGATGTtatcggtctaaggcactgcatcgcaatgctagaggtgtcactacagaccctggttcgatcccgggctgtatcacaacgggccgtgatcgggagtcccatagggcggcgcacaattggcccagcgtcatccggttttgaggagggtttggcctgggggAGCTTTacaagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatgaaggttaaataaaaa
>XM_036979223.1
TGTCCTAAATATAGGCCATGGCCCGTCTTGATTTCATCTGACCGACTGTCAAACTCAGTGACTCAGTGCCACAGCAATATTACAAGAGGTTTTCAGACTGAGAGACTGCAAGCGACACGATCACAGACCCGCCAATCGCAATCCTCTGCTTTGCCATGGCGAtaaaagaaaaaaCAGCAACACAAGAGGCTTTCTGGGACATGGATTGGGAGGAAGGCAGAACCATGGAGGGACTGTCTATAACCCACTGGGTGAACAGCCCAGTCCGCCACCAGGCCCTGTTCCAAGGAAGGGACTTGGACGACTGTGTGGAGGACCATGACCTGTTCGCCCTGCCCGGGCCAGCCTTCCCTGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAAGCTAGAAGGGGTCTGCGACGATACTACCACAACCCAACCCCAGCGGACTCAGCCTGTTTACCAGGTGCTTCTGGACGTGTCCCAGTTCAGACCTGAGGATATCATGATTCAGGTGTTTGAGGGATGGCTCTTGATCAAGGCTCAGCATGGAGCCAGAATGGATGAACATGGGTTTGTTACCCGAAGCTTCACCCGTCAGTACCCACTGCCTGAGAAACTACAGCAGGCGGGGGGTCTGAGGGCTCTACTATGTCATGATGGGATACTGGTGGTGGAATCCAAACAGAGAACACCTGTTAGGATACAACACACTGAGGAGGACCCCTATtgattattgacttgattattgaCTCTTGATTATTGACTATTGATTATTGACTATTGATTATTGACTATTGATTATTGATTATTACTGTATTGATCAGGTAAAGATGAGGTCAGATCAGCTGTTACAGTACCACTAACATGAGTGATCGGTTCATTCATTGTGTCTGTTATTTTCGTGTGAAGTTAAATTTTCAAATATTTCTCTAAACATTGTTAttgttacatttctatctgacGCTACTTTGCTACAAAAAGCTGTTGGTGCTAACGTTATTGAATTATATAACAGCAGTAATGACATATTTAAAATCAATTTTCTTAAAATACGTTTTTTCCTCCTCGCTTTGAAAATTTACTCCAGCTCCTCTCacctcaatttaaaaaaaaaatgcttataATTTGAACAAATATGAAGTGTATATTTAATTTGGTAAATGGACAGAGAGAAGTTCCTCTCCAGTCATTGAAAACGTATCTATGACATAAATGGGAATGCTAAGCATGAGGCTTTCAGCATCAGTGACGATGTTGTTTTTACAGTACAAATTTTATGAGATTGTTTAGAAATTGTTCACTGTTGAAAGAAGATACTTAAAAATGCGATAGAACAATAAATATTGTTATCAGATGTtatcggtctaaggcactgcatcgcaatgctagaggtgtcactacagaccctggttcgatcccgggctgtatcacaacgggccgtgatcgggagtcccatagggcggcgcacaattggcccagcgtcatccggttttgaggagggtttggcctgggggAGCTTTacaagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatgaaggttaaataaaaa
>XM_036979221.1
GTCCTAAATATAGGCCATGGCCCGTCTTGATTTCATCTGACCGACTGTCAAACTCAGTGACTCAGTGCCACAGCAATATTACAAGAGGTTTTCAGACTGAGAGACTGCAAGCGACACGATCACAGACCCGCCAATCGCAATCCTCTGCTTTGCCATGGCGAtaaaagaaaaaaCAGCAACACAAGAGGCTTTCTGGGACATGGATTGGGAGGAAGGCAGAACCATGGAGGGACTGTCTATAACCCACTGGGTGAACAGCCCAGTCCGCCACCAGGCCCTGTTCCAAGGAAGGGACTTGGACGACTGTGTGGAGGACCATGACCTGTTCGCCCTGCCCGGGCCAGCCTTCCCTGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTTGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTTGGGTAGTGAGGCCCGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAAGCTAGAAGGGGTCTGCGACGATACTACCACAACCCAACCCCAGCGGACTCAGCCTGTTTACCAGGTGCTTCTGGACGTGTCCCAGTTCAGACCTGAGGATATCATGATTCAGGTGTTTGAGGGATGGCTCTTGATCAAGGCTCAGCATGGAGCCAGAATGGATGAACATGGGTTTGTTACCCGAAGCTTCACCCGTCAGTACCCACTGCCTGAGAAACTACAGCAGGCGGGGGGTCTGAGGGCTCTACTATGTCATGATGGGATACTGGTGGTGGAATCCAAACAGAGAACACCTGTTAGGATACAACACACTGAGGAGGACCCCTATtgattattgacttgattattgaCTCTTGATTATTGACTATTGATTATTGACTATTGATTATTGACTATTGATTATTGATTATTACTGTATTGATCAGGTAAAGATGAGGTCAGATCAGCTGTTACAGTACCACTAACATGAGTGATCGGTTCATTCATTGTGTCTGTTATTTTCGTGTGAAGTTAAATTTTCAAATATTTCTCTAAACATTGTTAttgttacatttctatctgacGCTACTTTGCTACAAAAAGCTGTTGGTGCTAACGTTATTGAATTATATAACAGCAGTAATGACATATTTAAAATCAATTTTCTTAAAATACGTTTTTTCCTCCTCGCTTTGAAAATTTACTCCAGCTCCTCTCacctcaatttaaaaaaaaaatgcttataATTTGAACAAATATGAAGTGTATATTTAATTTGGTAAATGGACAGAGAGAAGTTCCTCTCCAGTCATTGAAAACGTATCTATGACATAAATGGGAATGCTAAGCATGAGGCTTTCAGCATCAGTGACGATGTTGTTTTTACAGTACAAATTTTATGAGATTGTTTAGAAATTGTTCACTGTTGAAAGAAGATACTTAAAAATGCGATAGAACAATAAATATTGTTATCAGATGTtatcggtctaaggcactgcatcgcaatgctagaggtgtcactacagaccctggttcgatcccgggctgtatcacaacgggccgtgatcgggagtcccatagggcggcgcacaattggcccagcgtcatccggttttgaggagggtttggcctgggggAGCTTTacaagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatgaaggttaaataaaaa
>XM_036979224.1
TAGGCCATGGCCCGTCTTGATTTCATCTGACCGACTGTCAAACTCAGTGACTCAGTGCCACAGCAATATTACAAGAGGTTTTCAGACTGAGAGACTGCAAGCGACACGATCACAGACCCGCCAATCGCAATCCTCTGCTTTGCCATGGCGAtaaaagaaaaaaCAGCAACACAAGAGGCTTTCTGGGACATGGATTGGGAGGAAGGCAGAACCATGGAGGGACTGTCTATAACCCACTGGGTGAACAGCCCAGTCCGCCACCAGGCCCTGTTCCAAGGAAGGGACTTGGACGACTGTGTGGAGGACCATGACCTGTTCGCCCTGCCCGGGCCAGCCTTCCCTGACCCTGGGGTAGTGAGGCCCGACCCTGGGGTAGTGAAGCTAGAAGGGGTCTGCGACGATACTACCACAACCCAACCCCAGCGGACTCAGCCTGTTTACCAGGTGCTTCTGGACGTGTCCCAGTTCAGACCTGAGGATATCATGATTCAGGTGTTTGAGGGATGGCTCTTGATCAAGGCTCAGCATGGAGCCAGAATGGATGAACATGGGTTTGTTACCCGAAGCTTCACCCGTCAGTACCCACTGCCTGAGAAACTACAGCAGGCGGGGGGTCTGAGGGCTCTACTATGTCATGATGGGATACTGGTGGTGGAATCCAAACAGAGAACACCTGTTAGGATACAACACACTGAGGAGGACCCCTATtgattattgacttgattattgaCTCTTGATTATTGACTATTGATTATTGACTATTGATTATTGACTATTGATTATTGATTATTACTGTATTGATCAGGTAAAGATGAGGTCAGATCAGCTGTTACAGTACCACTAACATGAGTGATCGGTTCATTCATTGTGTCTGTTATTTTCGTGTGAAGTTAAATTTTCAAATATTTCTCTAAACATTGTTAttgttacatttctatctgacGCTACTTTGCTACAAAAAGCTGTTGGTGCTAACGTTATTGAATTATATAACAGCAGTAATGACATATTTAAAATCAATTTTCTTAAAATACGTTTTTTCCTCCTCGCTTTGAAAATTTACTCCAGCTCCTCTCacctcaatttaaaaaaaaaatgcttataATTTGAACAAATATGAAGTGTATATTTAATTTGGTAAATGGACAGAGAGAAGTTCCTCTCCAGTCATTGAAAACGTATCTATGACATAAATGGGAATGCTAAGCATGAGGCTTTCAGCATCAGTGACGATGTTGTTTTTACAGTACAAATTTTATGAGATTGTTTAGAAATTGTTCACTGTTGAAAGAAGATACTTAAAAATGCGATAGAACAATAAATATTGTTATCAGATGTtatcggtctaaggcactgcatcgcaatgctagaggtgtcactacagaccctggttcgatcccgggctgtatcacaacgggccgtgatcgggagtcccatagggcggcgcacaattggcccagcgtcatccggttttgaggagggtttggcctgggggAGCTTTacaagtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatgaaggttaaataaaaa

Function

symbol description
hspb3 Predicted to be active in cytoplasm and nuclear speck. Human ortholog(s) of this gene implicated in distal hereditary motor neuronopathy type 2C. Orthologous to human HSPB3 (heat shock protein family B (small) member 3).

NR:

description
heat shock protein beta-3

GO: NA

KEGG:

id description
K09544 HSPB3; heat shock protein beta-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979222.1 False 1712 mRNA 0.46 2 3818038 3823330
XM_036979223.1 False 1607 mRNA 0.44 3 3818041 3823330
XM_036979221.1 False 1711 mRNA 0.46 2 3818042 3823330
XM_036979224.1 True 1575 mRNA 0.44 3 3818052 3823330

Neighbor

gene id symbol gene type direction distance location
LOC118964791 NA coding upstream 275153 3540366 ~ 3542885 (+)
fst fst coding upstream 326297 3463669 ~ 3491741 (+)
isl1 isl1 coding upstream 725348 3084681 ~ 3092690 (+)
LOC110525071 LOC106585963 coding upstream 951556 2743964 ~ 2866482 (+)
LOC110516346 NA coding upstream 1093107 2723765 ~ 2724931 (+)
LOC110513046 snx18 coding downstream 3840 3827170 ~ 3866575 (+)
LOC110525164 LOC106585954 coding downstream 172803 3996133 ~ 4032894 (+)
LOC110525165 LOC105014571 coding downstream 226147 4049477 ~ 4122404 (+)
LOC110511702 LOC106585945 coding downstream 319858 4143188 ~ 4325682 (+)
LOC110525166 LOC106585946 coding downstream 434831 4258161 ~ 4277505 (+)
G466845 NA non-coding upstream 2645 3814966 ~ 3815393 (+)
G466841 NA non-coding upstream 5650 3805952 ~ 3812388 (+)
G466797 NA non-coding upstream 65643 3751944 ~ 3752395 (+)
G466785 NA non-coding upstream 84128 3733534 ~ 3733910 (+)
G466784 NA non-coding upstream 84746 3731994 ~ 3733292 (+)
G466860 NA non-coding downstream 26851 3850181 ~ 3851361 (+)
G466853 NA non-coding downstream 44057 3867387 ~ 3867624 (+)
G466956 NA non-coding downstream 93943 3917273 ~ 3917516 (+)
G466959 NA non-coding downstream 98220 3921550 ~ 3923418 (+)
G466969 NA non-coding downstream 118860 3942190 ~ 3942537 (+)
G466813 NA other upstream 44698 3772864 ~ 3773340 (+)
G465578 NA other upstream 835613 2978842 ~ 2982425 (+)
zfr zfr other upstream 1408780 2342330 ~ 2451362 (+)
G465355 NA other upstream 1411948 2405119 ~ 2406090 (+)
G468732 NA other downstream 2285049 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 2371442 6194772 ~ 6199155 (+)
G468755 NA other downstream 2386869 6210199 ~ 6244501 (+)
G468768 NA other downstream 2431146 6254476 ~ 6371873 (+)
G468791 NA other downstream 2554309 6350096 ~ 6379704 (+)

Expression


Co-expression Network