LOC110525169 (LOC106585939)


Basic Information

Item Value
gene id LOC110525169
gene name LOC106585939
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4643954 ~ 4650871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605116.2
GTAATGAGAAACTTGACGCAAGTTCATACATTCACTCTGCTGCTACCGGTTTTCAGGCACATACGAAACACTGCCGCCGGCTTTTCATTGACACTTGGTTCATTGGACAGGCTCACTGAAAAACACCAACTGTGAACCTTCCAGTTATTATCTGAACAACTAACGCGCGTTACATTCTTTTTTTTTAGAAGAAATGAAAAATAGCACTCttttgttgtggaatttcttACTTTGTGCAGTTGCTTTCTTTGTGTCGGGAGCGGACGAAAACACAATTTTCAAAGatgaGGAGTTTAAAGTGCCGCGTGGCGAGGATGAGACGGTCCATGACCTTATCACATACAACATGAGGAAGAGTCTGGATCTAGACGTGGACGGCTGCATCCTGGTGCCTGGTGAGAAGAGGAGTCTGCTGGAATGTGGATTCAACGTCACAGCCAAGACCATCTTCATCATCCACGGCTGGACGaTGAGCGGGATGTTTGAGAGTTGGATGCGAAAGCTGGTGGCGGCCATGATGGAGCGAGAGCCAGAGGCCAACGTGGTCATCGTTGAATGGCTGCCCATGGCCCACCAGCTCTACCCTGACGCTGTCAACCACACCTACCAAGTCGGCCTCAGCGTCGCCACCACCATCAACTGGCTCCAGGAGGAACAGCAGATGCCCTTGCAGAATGTGCACCTGATTGGCTACAGCTTGGGGGCCCATGTGGCGGGCTACGCTGGCACGTTTGTGCGAGGGAGCGTCGGCCGAATCACAGGTCTAGACCCGGCAGGGCCCATGTTTGAGGGGGTGGGGGATGAGAAGCGCCTCTCTTCGGACGACGCTGACTTCGTAGATGTCCTGCATACGTACACTCGCGAGGCTCTGGGAGTGAGCATAGGCATTCAGCAACCAATCGGAGACATCGACATCTATCCCAACGGAGGAGACGTGCAGCCGGGCTGTGACCTGACCAGCGTGCTGACCAGCGCCTCCGGAGGAAACTTCATGGATGTGATGAAGTGTGAGCACGAGCGAGCCGTACACCTGTTTGTGGACTCTCTGCTTAGCAAGGAACACACGAGCTTCGCCTACCAGTGCACAGACCCTGAACGCTTCAAGAAGGGCATCTGCCTGAGCTGTCGTAAGAACCGTTGCAACCAGATGGGTTACAACGCCAAGAAGACGAGGAAGAGGCGCAACAGCAAGATGTACCTGAAGACCCGCGCCGACACACCCTTCGGAGGGATCCATTATCAGATGAAGATGCATGTGTTCAACAGGAAGCAGGCTGACAATGCTGACCCGACCTTCTACGTGAAACTGTATGGCGCTCACAACGACAGCCAAGACTTGCATGTAGACATtcCTAACAAAGTGGGTTTGAACCTGACCAACACCTTCCTGGTCTTCACCGAGGATGACATTGGGGACCTGCTGAAGATCCGTCTGAGCTGGGAGGGGGCGTCTGAGTCCTTCGGGTCCTTCTGGAAAAGCATTAAGAAGAACTTCTGGGACTGGAAGAGCAGCAGCAAGCCCACCAACCAGGTGTTGGAGGTCCGTAGGATCCGTGTCAAGTGTGGAGAAACTCAGAAGAAGTTCACGTTCTGTGCCCAGGACCCCTCGTTGACTGAGATCACTCCAGGACAGGGGATCACGTACGTCAAGTGTCGCGATGGCTGGGAGGTAAAACCCAGTAACAAAAGATTACACATATAAGGATTCAGGACTTCAACGATCAATACACTGTCACCATGGGAACCCGACGGAGGGAAGAAAGAACCGGCACCTCTTCGTCTGAGCTGCTGGATGGTTTCCGTTGGTTACTGATGCTCGCATGACTCCGGTCTCTGTCAAATGGGGCGACGGGAGGCATGTGCTGTGTGGGAGGGGTTTGGGGCGGTCCTTAATTGTACTGTCTGTCAGGACTGTCTTGACGATCCTTAGTGTTTGTTTGTGCAGACTGGCAGTCAACTCGGATTAGGAAAATGGTGTTAAAATGTGTTATCGGACATTCCCCAACAAACCTAGTCtctttactgtatatatattttttattaatttatgaaGAATGGAAGCACTGCAAGACCGAGCTTTATTTATCAACCCCCAAGTACAGCCTGTACTGACGCACATTTACATTAGTTGTTTAATAGTTGTGAGTTGCAGTATTTGTCTGCTTGTGTTTTGAGTGTATGTCTTTTTGTTATTTGTGTGGTATGACCgtggtgtgtgtgagcgtgctcTTTTGGGTAGAGCGAGCCGACTGAGATTAACGTGACTACACTGTATCACTGAAGGAGGTGACTGGCTGCATTCACATGATCTTTCACTGCATTGTGACTTCTGTGTACCATAGTAGTTTGTGTATATAATGTAACTaacatattgtttttttttttttcctaaaTAAATTAAAATTCACTTATTTTTAA
>XM_021605117.2
CGTGCGGAGATGTGGCCGTGCGCCAGTGGCAGAGAGGCCACGGTAGCGATTCATGTGCGCCGAGTTTAACACGTGTAGACTACACTAAAATGCttacaacaatgcagagtttaaaaaaaaaaaaaaataagaaaaacgtCAATGGTAATAAAATAACAAGGACACTATATACAAGGAGCAGGCCTACTCGTATCGCGTTAATGTGACTAGGCAATCAGAATGGATAATAGCGatgaGGAGTTTAAAGTGCCGCGTGGCGAGGATGAGACGGTCCATGACCTTATCACATACAACATGAGGAAGAGTCTGGATCTAGACGTGGACGGCTGCATCCTGGTGCCTGGTGAGAAGAGGAGTCTGCTGGAATGTGGATTCAACGTCACAGCCAAGACCATCTTCATCATCCACGGCTGGACGaTGAGCGGGATGTTTGAGAGTTGGATGCGAAAGCTGGTGGCGGCCATGATGGAGCGAGAGCCAGAGGCCAACGTGGTCATCGTTGAATGGCTGCCCATGGCCCACCAGCTCTACCCTGACGCTGTCAACCACACCTACCAAGTCGGCCTCAGCGTCGCCACCACCATCAACTGGCTCCAGGAGGAACAGCAGATGCCCTTGCAGAATGTGCACCTGATTGGCTACAGCTTGGGGGCCCATGTGGCGGGCTACGCTGGCACGTTTGTGCGAGGGAGCGTCGGCCGAATCACAGGTCTAGACCCGGCAGGGCCCATGTTTGAGGGGGTGGGGGATGAGAAGCGCCTCTCTTCGGACGACGCTGACTTCGTAGATGTCCTGCATACGTACACTCGCGAGGCTCTGGGAGTGAGCATAGGCATTCAGCAACCAATCGGAGACATCGACATCTATCCCAACGGAGGAGACGTGCAGCCGGGCTGTGACCTGACCAGCGTGCTGACCAGCGCCTCCGGAGGAAACTTCATGGATGTGATGAAGTGTGAGCACGAGCGAGCCGTACACCTGTTTGTGGACTCTCTGCTTAGCAAGGAACACACGAGCTTCGCCTACCAGTGCACAGACCCTGAACGCTTCAAGAAGGGCATCTGCCTGAGCTGTCGTAAGAACCGTTGCAACCAGATGGGTTACAACGCCAAGAAGACGAGGAAGAGGCGCAACAGCAAGATGTACCTGAAGACCCGCGCCGACACACCCTTCGGAGGGATCCATTATCAGATGAAGATGCATGTGTTCAACAGGAAGCAGGCTGACAATGCTGACCCGACCTTCTACGTGAAACTGTATGGCGCTCACAACGACAGCCAAGACTTGCATGTAGACATtcCTAACAAAGTGGGTTTGAACCTGACCAACACCTTCCTGGTCTTCACCGAGGATGACATTGGGGACCTGCTGAAGATCCGTCTGAGCTGGGAGGGGGCGTCTGAGTCCTTCGGGTCCTTCTGGAAAAGCATTAAGAAGAACTTCTGGGACTGGAAGAGCAGCAGCAAGCCCACCAACCAGGTGTTGGAGGTCCGTAGGATCCGTGTCAAGTGTGGAGAAACTCAGAAGAAGTTCACGTTCTGTGCCCAGGACCCCTCGTTGACTGAGATCACTCCAGGACAGGGGATCACGTACGTCAAGTGTCGCGATGGCTGGGAGGTAAAACCCAGTAACAAAAGATTACACATATAAGGATTCAGGACTTCAACGATCAATACACTGTCACCATGGGAACCCGACGGAGGGAAGAAAGAACCGGCACCTCTTCGTCTGAGCTGCTGGATGGTTTCCGTTGGTTACTGATGCTCGCATGACTCCGGTCTCTGTCAAATGGGGCGACGGGAGGCATGTGCTGTGTGGGAGGGGTTTGGGGCGGTCCTTAATTGTACTGTCTGTCAGGACTGTCTTGACGATCCTTAGTGTTTGTTTGTGCAGACTGGCAGTCAACTCGGATTAGGAAAATGGTGTTAAAATGTGTTATCGGACATTCCCCAACAAACCTAGTCtctttactgtatatatattttttattaatttatgaaGAATGGAAGCACTGCAAGACCGAGCTTTATTTATCAACCCCCAAGTACAGCCTGTACTGACGCACATTTACATTAGTTGTTTAATAGTTGTGAGTTGCAGTATTTGTCTGCTTGTGTTTTGAGTGTATGTCTTTTTGTTATTTGTGTGGTATGACCgtggtgtgtgtgagcgtgctcTTTTGGGTAGAGCGAGCCGACTGAGATTAACGTGACTACACTGTATCACTGAAGGAGGTGACTGGCTGCATTCACATGATCTTTCACTGCATTGTGACTTCTGTGTACCATAGTAGTTTGTGTATATAATGTAACTaacatattgtttttttttttttcctaaaTAAATTAAAATTCACTTATTTTTAA

Function

NR:

description
endothelial lipase-like isoform X2

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004465 lipoprotein lipase activity molecular_function

KEGG:

id description
K22284 LIPG; endothelial lipase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605116.2 False 2418 mRNA 0.50 10 4643954 4650871
XM_021605117.2 True 2366 mRNA 0.50 10 4644857 4650871

Neighbor

gene id symbol gene type direction distance location
LOC118964808 NA coding upstream 49764 4592804 ~ 4594190 (+)
LOC110525072 LOC106585937 coding upstream 60594 4447482 ~ 4583360 (+)
LOC110511702 LOC106585945 coding upstream 318272 4143188 ~ 4325682 (+)
LOC110525166 LOC106585946 coding upstream 366449 4258161 ~ 4277505 (+)
LOC110525165 LOC105014571 coding upstream 521550 4049477 ~ 4122404 (+)
LOC110525174 gpx8 coding downstream 139967 4790838 ~ 4792423 (+)
bmp2k LOC106585926 coding downstream 192004 4842875 ~ 4935449 (+)
LOC118964809 NA coding downstream 263995 4914866 ~ 4918091 (+)
prdm8b LOC106585925 coding downstream 928903 5579774 ~ 5585518 (+)
LOC118965066 LOC106585924 coding downstream 972229 5623100 ~ 5624315 (+)
G467643 NA non-coding upstream 11822 4631562 ~ 4632132 (+)
G467294 LOC105014525 non-coding upstream 33080 4609864 ~ 4610874 (+)
G467293 LOC106570909 non-coding upstream 40556 4602572 ~ 4603398 (+)
G467221 NA non-coding upstream 46595 4587908 ~ 4597359 (+)
G467285 NA non-coding upstream 92201 4550623 ~ 4551753 (+)
G467700 NA non-coding downstream 29818 4680689 ~ 4680895 (+)
G467705 NA non-coding downstream 39572 4690443 ~ 4690651 (+)
G467713 NA non-coding downstream 46374 4697245 ~ 4697483 (+)
G467733 NA non-coding downstream 62503 4713374 ~ 4715401 (+)
G467819 NA non-coding downstream 238516 4889387 ~ 4892909 (+)
G466813 NA other upstream 870614 3772864 ~ 3773340 (+)
G465578 NA other upstream 1661529 2978842 ~ 2982425 (+)
LOC110525071 LOC106585963 other upstream 1809844 2743964 ~ 2866482 (+)
zfr zfr other upstream 2234696 2342330 ~ 2451362 (+)
G468732 NA other downstream 1457508 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 1543901 6194772 ~ 6199155 (+)
G468755 NA other downstream 1559328 6210199 ~ 6244501 (+)
G468768 NA other downstream 1603605 6254476 ~ 6371873 (+)
G468791 NA other downstream 1726768 6350096 ~ 6379704 (+)

Expression


Co-expression Network