LOC118964809


Basic Information

Item Value
gene id LOC118964809
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 4914866 ~ 4918091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051987.1
cctgtccatccacagcagctccaataccttcaggtactactgagtcaccctgtccatccacagcagctccaaaACCTTCAGgtactactgagtcaccctgtccatccacagcagctccaataccttcaggtactactgagtcaccctcaCACCATGACACTGTAGCAGCTCTTATAccctcaggtactactgagtcaccctgtccatccacagcagctccaataccttcaggtactactgagtcaccctgtccatccacagcagctccaataccttcaggtactactgagtcaccctgtccatccacagcagctccaataccttcaggtactactgagtcacc

Function

NR:

description
titin homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051987.1 True 343 mRNA 0.52 3 4914866 4918091

Neighbor

gene id symbol gene type direction distance location
LOC110525174 gpx8 coding upstream 122443 4790838 ~ 4792423 (+)
LOC110525169 LOC106585939 coding upstream 263995 4643954 ~ 4650871 (+)
LOC118964808 NA coding upstream 320676 4592804 ~ 4594190 (+)
LOC110525072 LOC106585937 coding upstream 331506 4447482 ~ 4583360 (+)
LOC110525166 LOC106585946 coding upstream 637361 4258161 ~ 4277505 (+)
prdm8b LOC106585925 coding downstream 661683 5579774 ~ 5585518 (+)
LOC118965066 LOC106585924 coding downstream 705009 5623100 ~ 5624315 (+)
LOC118964810 LOC106585924 coding downstream 739177 5657268 ~ 5658483 (+)
LOC110525066 LOC106585873 coding downstream 1080735 5998826 ~ 6036553 (+)
LOC110510489 LOC106593421 coding downstream 1142517 6060608 ~ 6147999 (+)
G467823 NA non-coding upstream 5977 4908560 ~ 4908889 (+)
G467819 NA non-coding upstream 21957 4889387 ~ 4892909 (+)
G467733 NA non-coding upstream 199465 4713374 ~ 4715401 (+)
G467713 NA non-coding upstream 217383 4697245 ~ 4697483 (+)
G467705 NA non-coding upstream 224215 4690443 ~ 4690651 (+)
G467828 NA non-coding downstream 5333 4923424 ~ 4924952 (+)
bmp2k LOC106585926 non-coding downstream 16541 4842875 ~ 4935449 (+)
G467834 NA non-coding downstream 24285 4942376 ~ 4942599 (+)
G467839 NA non-coding downstream 33492 4951583 ~ 4951844 (+)
G467840 NA non-coding downstream 34269 4952360 ~ 4952649 (+)
G466813 NA other upstream 1141526 3772864 ~ 3773340 (+)
G465578 NA other upstream 1932441 2978842 ~ 2982425 (+)
LOC110525071 LOC106585963 other upstream 2080756 2743964 ~ 2866482 (+)
zfr zfr other upstream 2505608 2342330 ~ 2451362 (+)
G468732 NA other downstream 1190288 6108379 ~ 6156681 (+)
G468643 LOC106607869 other downstream 1276681 6194772 ~ 6199155 (+)
G468755 NA other downstream 1292108 6210199 ~ 6244501 (+)
G468768 NA other downstream 1336385 6254476 ~ 6371873 (+)
G468791 NA other downstream 1459548 6350096 ~ 6379704 (+)

Expression


Co-expression Network