LOC110525083 (LOC106600203)


Basic Information

Item Value
gene id LOC110525083
gene name LOC106600203
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 6965711 ~ 6972578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979305.1
gagagaaagaaagacgacAACAGCAAGAGGAGAGAAAGATCATGTTTGAGAGtgatcaagaagaagaaaatatatgGAAACAGAAGCAAATTGAcatggaggagggaagagagagggagaacaagagacagagagagatagaagagatacACAGACGACAAcaacaagaggagagacagaaacaaaaggagaaggagaaagaaagggagaaagacaatgacaatcagagagagatggaattaaAAGATCAGcaacagaaagagatggagaaagaaaagatgattatgagagaaagggaggaagcagGAAGAAGAAAGGAAGGGCAGAAAAATATTTTGGGGGAAATTGAGGGACAGAATGAACTGgagatagaacaggagagagagatggaagaaaagCAGGAAGTGATtaaggaagcagaggaagagtacagggaaagagaagagagaggaaaggaagtaaGCATGAAGAAACATGTAGTAGTTAATGTTAAAGCAAAAGCACGGGAAGTCTTCAATAGGCGtaaagagaggaggttagaagTGTTGAAGGGGGAGCGAGAACACATAGAAAGAGGACAACAaatcaggagggagaaggaggaaagacGGCTGGAGATggaaagaaaacaggagagggcAAGACAACAAGAGGAGCAGGATAAAAAACGAGAGATTGAAATTGCTAGACAGAAAGAAATGTTGAGactaagagaggaggagaggcagagagaggaagagagagaggaggagagaaagaaagccaTTAAATGCCTTTTATctttaatcagagagagagaaaaaataatacaGGCAAAAAAAAGAGAGGAGATGGTGGAAGAGGAAAGAAGGGAGATCCTTGAGTACAAGAGGGGTGACttagaggaggaggaaaaagaagatgacaaggaggACATTCTCCCACCCGATAAAAGTATCCGAAGGAGAGCCGTGGGCTGGGTGAATAAAAAATGGGAGAAGAGGAAcctcagaaagatagagagaacgtatcagagagaggctgaggagggccATAAGATCGTCCACATAGCCATCCCTGGACACACAAGGCTAACATCCACCATGAcccgggcagagagagagagggagaagaggaaggagctGCTGAAGgctgaggagagaaggaagaagatGGAGGATTTCAATAAGCAGTGGAGAGAGCGGTCCCTGCTTAAAAAACAGACTCATCAAcaactgaaggaggagagggagaggatgaaggaaAACTACCTGGAGCAGATGAATCTGGAGGCTGATGCTCAAATCAACACCCGGTGTCTAACCACCCAACACAGCCACGATTACAACCACGGTCAGGAGTTGCCCGGGTGGGCCAATGGCCAACAAGTAAGCCAAGAGCCCACTGGATCTGCTGATGGCCACCAGGAAAGGCCAAGGAGGCAACAGGCATGGGCAGAGAACCAGGAGGGGAGTTCAGAGAACCAGCAGGAGGGGCCAGAGAACCATCAGGGGGGGCCAGACAGCCAGCAGCTAGAAGCTCCAGAAGAGGCTGAAACATCAGAGCGAATATCCAAGACAAAGAAAAAGCCAAGCATCTGGAAGAAAATTAGGATGAGCCTTCCTGACGTGCTGTCTGCCTAGAGCTGGAACTCGATGAAGCCACAGTTCCACTAATGTTACGTTGGTAATTAAAAGTGTCGCCCAataattcctcctcctctttaagtcATCGAGCCACATTTCCTCCTCAAAACATTATAGTCTCCTCAAGCCAGCAAGTATCCTCTTTATCAGGCAACAAACCATCGAAGGTCAGTGACCCTCCTCCCAAGAACAGAGACTCTCATCTGTATCCTAGTTAAATTCATCTCTGCTTACCACCTCTACAGTCCTAGAAAATATCCC
>XM_036979304.1
gagagaaagaaagacgacAACAGCAAGAGGAGAGAAAGATCATGTTTGAGAGtgatcaagaagaagaaaatatatgGAAACAGAAGCAAATTGAcatggaggagggaagagagagggagaacaagagacagagagagatagaagagatacACAGACGACAAcaacaagaggagagacagaaacaaaaggagaaggagaaagaaagggagaaagacaatgacaatcagagagagatggaattaaAAGATCAGcaacagaaagagatggagaaagaaaagatgattatgagagaaagggaggaagcagGAAGAAGAAAGGAAGGGCAGAAAAATATTTTGGGGGAAATTGAGGGACAGAATGAACTGgagatagaacaggagagagagatggaagaaaagCAGGAAGTGATtaaggaagcagaggaagagtacagggaaagagaagagagaggaaaggaagtaaGCATGAAGAAACATGTAGTAGTTAATGTTAAAGCAAAAGCACGGGAAGTCTTCAATAGGCGtaaagagaggaggttagaagTGTTGAAGGGGGAGCGAGAACACATAGAAAGAGGACAACAaatcaggagggagaaggaggaaagacGGCTGGAGATggaaagaaaacaggagagggcAAGACAACAAGAGGAGCAGGATAAAAAACGAGAGATTGAAATTGCTAGACAGAAAGAAATGTTGAGactaagagaggaggagaggcagagagaggaagagagagaggaggagagaaagaaagccaTTAAATGCCTTTTATctttaatcagagagagagaaaaaataatacaGGCAAAAAAAAGAGAGGAGATGGTGGAAGAGGAAAGAAGGGAGATCCTTGAGTACAAGAGGGGTGACttagaggaggaggaaaaagaagatgacaaggaggACATTCTCCCACCCGATAAAAGTATCCGAAGGAGAGCCGTGGGCTGGGTGAATAAAAAATGGGAGAAGAGGAAcctcagaaagatagagagaacgtatcagagagaggctgaggagggccATAAGATCGTCCACATAGCCATCCCTGGACACACAAGGCTAACATCCACCATGAcccgggcagagagagagagggagaagaggaaggagctGCTGAAGgctgaggagagaaggaagaagatGGAGGATTTCAATAAGCAGTGGAGAGAGCGGTCCCTGCTTAAAAAACAGACTCATCAAcaactgaaggaggagagggagaggatgaaggaaAACTACCTGGAGCAGATGAATCTGGAGGCTGATGCTCAAATCAACACCCGGTGTCTAACCACCCAACACAGCCACGATTACAACCACGGTCAGGAGTTGCCCGGGTGGGCCAATGGCCAACAAGTAAGCCAAGAGCCCACTGGATCTGCTGATGGCCACCAGGAAAGGCCAAGGAGGCAACAGGCATGGGCAGAGAACCAGGAGGGGAGTTCAGAGAACCAGCAGGAGGGGCCAGAGAACCATCAGGGGGGGCCAGACAGCCAGCAGCTAGAAGCTCCAGAAGAGGCTGAAACATCAGAGCGAATATCCAAGACAAAGAAAAAGCCAAGCATCTGGAAGAAAATTAGGATGAGTCAACAAGTGATGAGCCAGATCAACCAATCAACGTCACTGCAGCTGTTCTACCCACCACCCCCACTGCTCTTCCTCCACCACCaacctcatcctcttctcctgttcAACTCATTTGCCGCCACACTAGAAAGGACTGGACATACAGTCGAAgtcgcaagtttacatacacttaggttggagtcattaaacgtTATGAACTGAGAGAAAACAGGACCTACCTTTGTTGATGATCTTATagccctcctcagcctctctctgatatgttctctctgtctttttgagGTTCCTCTTCTCCCACTTCTTAGTCACCCAGGCCACAGCTCTCCTTCAGATACTTTTATAGGGTGGAACAAGGTCTATGGTCTAAAATAGATGTGTATAGTTGACTCCTCTGCAA

Function

NR:

description
trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979305.1 False 1886 mRNA 0.46 3 6965711 6968333
XM_036979304.1 True 1995 mRNA 0.46 3 6965711 6972578

Neighbor

gene id symbol gene type direction distance location
LOC118964794 LOC106600203 coding upstream 15462 6948016 ~ 6950249 (+)
LOC118964819 LOC106597030 coding upstream 30140 6933614 ~ 6935571 (+)
LOC118964818 LOC106597030 coding upstream 51266 6911820 ~ 6914445 (+)
LOC110525195 NA coding upstream 55755 6907344 ~ 6929358 (+)
LOC118964793 LOC106597030 coding upstream 69918 6888849 ~ 6895793 (+)
LOC118964823 LOC106600203 coding downstream 21910 6994488 ~ 6996771 (+)
LOC118964821 LOC106600203 coding downstream 50422 7023000 ~ 7025283 (+)
LOC118964824 LOC106597030 coding downstream 78852 7051430 ~ 7053712 (+)
LOC118964820 LOC106600203 coding downstream 95277 7067855 ~ 7070138 (+)
LOC118964822 LOC106600203 coding downstream 123815 7096393 ~ 7098676 (+)
G468998 NA non-coding upstream 3330 6942683 ~ 6962381 (+)
G468988 NA non-coding upstream 6567 6924657 ~ 6959144 (+)
G468995 NA non-coding upstream 7532 6924446 ~ 6958179 (+)
G468971 NA non-coding upstream 12147 6893998 ~ 6953564 (+)
G468993 NA non-coding upstream 13187 6917406 ~ 6952524 (+)
G469006 NA non-coding downstream 101632 7074210 ~ 7080369 (+)
G469013 NA non-coding downstream 191130 7163708 ~ 7196900 (+)
LOC118964829 LOC106597030 non-coding downstream 217845 7153940 ~ 7248751 (+)
LOC118964833 LOC106600203 non-coding downstream 255643 7226101 ~ 7268528 (+)
G468991 NA non-coding downstream 287974 7260552 ~ 7262569 (+)
ccl19a.1 LOC106585878 other upstream 224218 6719880 ~ 6741493 (+)
ccl19a.2 LOC106585882 other upstream 252674 6710688 ~ 6713091 (+)
G468887 sdf2l other upstream 291324 6672508 ~ 6674387 (+)
G468841 LOC106590901 other upstream 412616 6550977 ~ 6557058 (+)
G468765 LOC106607873 other upstream 477293 6423414 ~ 6488418 (+)
G469048 NA other downstream 379608 7352186 ~ 7352578 (+)
LOC110525210 LOC106585898 other downstream 635739 7608126 ~ 7652997 (+)
G470292 NA other downstream 1240702 8213280 ~ 8217274 (+)
G470599 NA other downstream 1837395 8809973 ~ 8810943 (+)
G470770 NA other downstream 2250773 9223351 ~ 9225513 (+)

Expression


Co-expression Network