LOC110525209 (LOC106585899)


Basic Information

Item Value
gene id LOC110525209
gene name LOC106585899
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 7678142 ~ 7685735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979331.1
CACACCCCTCCATCACACTCCACTTGCGCGTTCAAGATGCGAGATTGCCTGAGCAATAGTTCCTCTCGCTACAGGCCTAAATTTGATTCTGCTCGGTTAGTGAGAGAACATTCTCCAAAATTCTGCTTCCTAACAAAttatatttaattttgtatttttcCATGTGGATATATCATTCACTCATTTGATTAGTATAATGAGGGGTCTTGGCTTTGAAGCCTGTTTATTGTCGTTGACACAGCTATGCATCCTCAGTTGCATAATGCAAACAGTTCTTACGCAGGATGCTTCGCCATCAGCAGCTTTAAGGCAGAGAATGCCATGGCAACACAACGGGCAGGTGTTTAGTATACTTAGCCACGGTTCTGAATATCAGCCATCGGGACGAAGAGACCGAAAAACAGGTTCAGCTCAACGGAATCACATAGTTGTCGTTATCAACAATAATGAGACGGCTGAAGAGACGAATGTGCACAGATACCCTGCGCCAAGAGGCTCTCCAAGGCGGCCAGCGCCGGGTGTGCAATTACGCACCGCGCGTCGACGTCCTAGTGGGGCGATTAGACATGAAAGACCCCAAGAGAACCGGGAGACTGCTTCAAGACCTTCAACATCAAATCCCACCGACGAGAAACCCACATCTACTAACTCTCCACCACTGACTAATTTGAGAAGAGAGGATATGATGGTTGGAGATGACCCGAACAACCCCTATAAATCCATTGGTTATAATCCCTATAACCCCTATTATAATTATTATGATGCTTACTACAGACCCAGAGCCAGAAGCAGAGAGCCGCATGGTTATGGCACAAGTTATCATCAACACGGAGGTCTCCCTGACTTGGTGCCTGACCCATACTATATTCAAGTTTCCTCCTATATCCAGAGGTCGCCCATGTACAATCTGAGATGTGCAGCCGAGGAAGGTTGCCTCGCAAGTTCTGCTCAGGGCGTGGCCGACTACGACACCCGGGTCCTGCTGCGGTTCCCCCAGCGCGTGAAGAACCAGGGCACTGCTGACTTCCTGCCCAGCAAACCTCGCTATGCCTGGGAATGGCACAGCTGCCATCATCACTTCCATAGCATGGACGAGTTCAGTCTGTACGAGCTGCTGGAGACCGGCTCAGAGAGGAGCGTGGCCGAGGGACACAAGGCCAGCTTCTGTTTGGAGGACACGTCATGTGACCCGGGATACTACAGACGCTTCGCCTGCACGTCTCACACTCAGGGATTGAGTCCTGGATGCTATGACACCTATAATGCCGATATTGACTGTCAGTGGATTGACATTACTGATGTGACACCTGGGAAGTATATCCTTAAGATCACTGTAAACCCAGGTCACCAGGTTCCAGAGTCCAACTTTGACAATAACGTTGTTCGTTGTAGTGTTCAATACAGCGGCACCTCTGTCCAGGTTTCAGGGTGTACTGTTACATCGTACTAAGAACAAAGGAAACAGCACCGAAGAAGCTTTACGATGATTTGCAAAACAAGACAACAACCAACATGGACGGACGATCAAATATGAAGACATTATTGTTGACAGTATTTATTGGTCTGAGTTTCCCGCAAAGCGAaacatttctttctttcttcctttcttttcttttttacttTATGAATATTCCTGGTTTAAACAATATCATATTACACCATTCACCcttcgttttttttttaaagcacaatGTGCAAAGTTGATAGAGACAAAGGTCATGGATGAGAAAGACACACTGTAGTAAGTGTTTCACTGTGGACGAAGCATGTGACATTACATTTGATTTTAAATTTCATCTTCACAAGCTACATTTTGTTTGGAATGCTAAAAGGTTTAATTGATTCGTTGTGGTATACATTATACATAAAATGGTTGTTTAGGTGCTAATTTAAGATTGTTATTGTAATGGAAGTTTTAGTATAATGGATATATTTAATCAAATGTTGCCATTTTAAACAATGTTTACAATATACGTTAAATATTGGTGCTACATTTACTTGGGCTATGTAATAAACATTGGTGCTACATTTACTTGGGCTATGTAATAAATATTGGTGCTACATTTATTTGGGCTATGTAATAAACATTGGTGCTACATTTTGAGACTGGAGGAAagttaaaatatttgttttattgggACTATTAGAGAATTATTGACTTGTTTGTGTATATACACATttgcatttgagtcatttagcagatgttctcaTCAacagtgacttacagtagtgagcgcATTTAGGATATTTTCTATACAGGTAACAAAACACACTTTTTTTAAGCTAGTTCTACTGAAATGCTAACCATACTGTACATATCGCCGGGCTCATGTGTTCGTGTTCCATTCATAATACAACACAAAGATCTGCAAATGTATTGTGAATGCAATTTAAATCAAGTTTGGATTTTTATTTGAAATTGTCTCAatatttggagagagagagaaataggccGTGTAAACACAATTAAAATGCTTAAAGTTC

Function

NR:

description
protein-lysine 6-oxidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979331.1 True 2484 mRNA 0.42 7 7678142 7685735
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118964832 NA coding downstream 466749 7209148 ~ 7211393 (-)
LOC118964830 LOC106600203 coding downstream 481895 7185773 ~ 7196247 (-)
LOC118964825 NA coding downstream 540084 7126604 ~ 7138058 (-)
LOC118964828 NA coding downstream 567620 7106364 ~ 7110522 (-)
LOC118964827 NA coding downstream 596150 7077834 ~ 7081992 (-)
ddr2l ddr1 coding upstream 31355 7717090 ~ 7770312 (-)
ier3 LOC106585901 coding upstream 105482 7791217 ~ 7792497 (-)
LOC110525004 ier3 coding upstream 130116 7815851 ~ 7817176 (-)
tor4ab LOC106585889 coding upstream 138033 7823768 ~ 7828264 (-)
LOC110525215 LOC106585890 coding upstream 158760 7844495 ~ 7850054 (-)
G469758 NA non-coding downstream 10157 7660408 ~ 7667985 (-)
G469750 NA non-coding downstream 30108 7647399 ~ 7648034 (-)
G469749 NA non-coding downstream 32197 7645735 ~ 7645945 (-)
G469748 LOC106585898 non-coding downstream 33552 7644177 ~ 7644590 (-)
G469722 NA non-coding downstream 74052 7603407 ~ 7604090 (-)
G469765 NA non-coding upstream 4150 7689885 ~ 7690277 (-)
G469767 NA non-coding upstream 12142 7697877 ~ 7698197 (-)
G469918 NA non-coding upstream 18303 7704038 ~ 7704349 (-)
G469919 NA non-coding upstream 18694 7704429 ~ 7704655 (-)
G469922 NA non-coding upstream 21538 7707273 ~ 7707723 (-)
G469751 NA other downstream 23524 7652639 ~ 7654618 (-)
G469411 NA other downstream 513570 7159458 ~ 7164572 (-)
G469361 NA other downstream 882147 6794427 ~ 6795995 (-)
G469368 LOC106593081 other downstream 913229 6763822 ~ 6764913 (-)
G469331 NA other downstream 966851 6710675 ~ 6711291 (-)
G470834 NA other upstream 610834 8296569 ~ 8298421 (-)
G472539 NA other upstream 2688117 10373852 ~ 10376077 (-)
G472576 mpeg1 other upstream 2790674 10476409 ~ 10479846 (-)
LOC110525252 ccser1 other upstream 3693792 11280815 ~ 11390675 (-)
G473930 NA other upstream 3915780 11601515 ~ 11601997 (-)

Expression

LOC110525209(LOC106585899) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

LOC110525209(LOC106585899) Expression in each Bioproject

Bar chart with 19 bars.
LOC110525209(LOC106585899) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network