Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525087 |
| gene name | LOC106585905 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 7913507 ~ 7954724 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: protein HIRA |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003682 | chromatin binding | molecular_function |
| id | description |
|---|---|
| K11293 | HIRA, HIR1; protein HIRA/HIR1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036979349.1 | True | 4158 | mRNA | 0.54 | 25 | 7913507 | 7954724 |
7,890,000
7,900,000
7,910,000
7,920,000
7,930,000
7,940,000
7,950,000
7,960,000
7,970,000
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gak | gak | coding | upstream | 3540 | 7867713 ~ 7909967 (+) |
| LOC110525210 | LOC106585898 | coding | upstream | 260510 | 7608126 ~ 7652997 (+) |
| LOC110525208 | LOC106585897 | coding | upstream | 313456 | 7534540 ~ 7600051 (+) |
| LOC110525085 | LOC106585885 | coding | upstream | 390206 | 7423076 ~ 7523301 (+) |
| LOC118964838 | LOC106600203 | coding | upstream | 565095 | 7346075 ~ 7348412 (+) |
| lifra | LOC106585909 | coding | downstream | 956628 | 8911352 ~ 8936882 (+) |
| spef2 | LOC106585910 | coding | downstream | 982358 | 8937082 ~ 8984264 (+) |
| slc1a3a | LOC106585918 | coding | downstream | 1067719 | 9022443 ~ 9056766 (+) |
| nipbla | LOC105014587 | coding | downstream | 1121473 | 9076197 ~ 9118856 (+) |
| LOC110525223 | ndc80 | coding | downstream | 1164244 | 9118968 ~ 9135047 (+) |
| G469880 | NA | non-coding | upstream | 1103 | 7912078 ~ 7912404 (+) |
| G469879 | NA | non-coding | upstream | 1511 | 7911796 ~ 7911996 (+) |
| G469878 | NA | non-coding | upstream | 2456 | 7910846 ~ 7911051 (+) |
| G469877 | NA | non-coding | upstream | 2726 | 7910558 ~ 7910781 (+) |
| G469871 | NA | non-coding | upstream | 29305 | 7883899 ~ 7884202 (+) |
| G470162 | NA | non-coding | downstream | 126466 | 8081190 ~ 8081420 (+) |
| G470232 | NA | non-coding | downstream | 178204 | 8132928 ~ 8133165 (+) |
| G470245 | NA | non-coding | downstream | 188677 | 8143401 ~ 8143627 (+) |
| G470248 | NA | non-coding | downstream | 189013 | 8143737 ~ 8144552 (+) |
| G470250 | NA | non-coding | downstream | 190169 | 8144893 ~ 8145269 (+) |
| G469048 | NA | other | upstream | 560929 | 7352186 ~ 7352578 (+) |
| ccl19a.1 | LOC106585878 | other | upstream | 1172014 | 6719880 ~ 6741493 (+) |
| ccl19a.2 | LOC106585882 | other | upstream | 1200470 | 6710688 ~ 6713091 (+) |
| G468887 | sdf2l | other | upstream | 1239120 | 6672508 ~ 6674387 (+) |
| G470292 | NA | other | downstream | 258556 | 8213280 ~ 8217274 (+) |
| G470599 | NA | other | downstream | 855249 | 8809973 ~ 8810943 (+) |
| G470770 | NA | other | downstream | 1268627 | 9223351 ~ 9225513 (+) |
| LOC110525088 | LOC106585913 | other | downstream | 1313654 | 9228570 ~ 9273994 (+) |
| G472364 | NA | other | downstream | 2325582 | 10280306 ~ 10281123 (+) |
