nipbla (LOC105014587)


Basic Information

Item Value
gene id nipbla
gene name LOC105014587
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 9076197 ~ 9118856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979360.1
cattttatccccccccccacacacacatatacaagcTAAATTGGCCACAGATTTATCCATGTCGGTTTAGACCGACAGAAACTCAAACCGAACGAATGTGTCCCCAATATACTTCCGTTCAAACATTCAACCCCGCCGTATGACGGAAGAAGAAAGAATCTGCCCAACCCAGATTATTGTTGACTGCTAGTTTAGCTGGacggctaacgttagctggcaaGTCAAGAACGGAGGTCTGTTGGAGGAGCAGCAAGAGAGAAGAAAGGGGGAgctagagagacacacagaccagGACAACCTAGcgtagcaacaacaaaaaaaaaatcacaagacTTGTGGACTTCTTCCTGAAATGTCCTTGGTTTTAATCCATACAGAACAGTGCCCTACAGAAAGAACAAAGGAGATGTGAGTACTGGTCTGGCGGCTGTGACGCTGAGCAACCTGTGTATCGCCACActgccccgcccccccccccccaccttcagCATGAATGGGGATATGCCTCATGTTCCCATCACCACTCTTGCTGGGATTGCTAGCCTTACAGACTTGTTGAATCAGCtacccctgccctctcctctcccagccacCACCACCAAAAGCCTGCTCTACAATGGGAGGATCGCAGAGGAGGTCAACTGCCTGCTGGCCTGCCGGGACGAGAACCTGGTCTCTCAGCTGGCCCACGGTCTTAACCAGGTTTCCACAGAGCACATAGAGCTGAAGGACAACCTGGGCAGTGATGAGCCAGAGGGCGACGTGCCGGCGCTGCTCCAGACGGTGCTGTCCAGGAACCCCGGCATCTTCAGGGAGAAAAATGTCATGCAGCAGCCGATGGTGCAACAGTACAAACCAATACAGAATTCCATGCATGGCAGCCCAGCCCAGTCAGCAAACTTTCAGCAGGCTTCAATGTCTCCTAATCCATCCAGCCGGGGATTTGTCTCCCCACAGTCGAGCTCAGGGAGTCGGTTCATCCCCCAGCAGAACAGCCCTGTGCCCAGCCCATACACTCCCCAGAGCCCAGCTGGGTTCATGCAGTACCCTCACCCCCCCAGCTACAATCAGCACCAACAGATACAGCAAGCCAGCCCCATGGTCCCTGGAGGCATGAGGAACATCCATGAGAGCAAGGGACCGATGACCAACGCTGCCCACCaccacccagacagacaggaggactACATGAGTATAGTTCACAGACTGGGGAACGAGGAGAGTGACCCCTCCATGAGAAACGCCTCGTTCCCTCTGAGGTCGCCTCAGCCTGGGTGCTCACCCGTGGGAAACGAAGGAACACCCAAAGCTGGCTCAAGGCCGCCGCTCATCCTTCAGTCTCCTCCTCCGTATATGTCCCCCCGGGAAGGCCCTCCGGACCTGCTACTGGAGTCTCCCGACCAgaggaagaagcagaagaagaagctgGTGGGCAAAGAGGACAAGGATGCGTACGACATCGTCACCTCGCCCTCCAAGGACACCACCAAGCTGACGCTGTCGCTGTCACGGGTGAAGtcggaggaggtggaggacccCTCTGGTGAGCTGCTGCCAGTCATGATGGATCAGAACTCTGACCTAGAGGGCGAGCTTGGGTGCCAGCAGGTCCCTGTGCTGCAGAACGTGGGGGTTATTAAAGGGCAGGAGGGCCCTCTCTCGTCGCCTTTTGATGAGGCCGAGCTGGACGCCCTGGCGGAGATTGAGAGGATAGAGCGTGAGTCAGCCAGTGAGAGGGAGCGCTGCTCCAAAGAGGTGCAGGATAAAGACAAGCCCCTGAAGAAGCGAAAGCAAGACTCGTTTCCACTGGAGCCTGGAGCAGGGGGCACCGCAGGCACCACCGGTGCGCCAGGCAGCGGAGGAGGGGGCAATGCAGGCAAACTGATCCCCCAGGAGGCTACAGCGGCAGGAAACGGAGCTAGCAGACCAGCCCTCATGGTCAGCATCGACCTGCAACAGGCGGGCCGGGCCGACGGCCAGCTTGACCCTTGCATGGCTGCGCCCATCCCGGCCCTGGAGGCACAACGCTGGCCCGAGGAGCCTGCCGAGGGCCCTGCAGCCGAAGGATCCGACACGGCCGGGGTGCTCCGGCTCAAAGCCGACAATCGACCCGAGGTCATCAAGAACAGCATGGACAAACACGATAACCACCGTGAGCCATCCAGGCACCGGCATGACGGAAAGCAAGACCGGCGCCCTGACACACCTAAGTCATCGAGCAGAGAGCACGGGCgggacagagaccgggagagGCGGCACAGGAATGAAGACAGGCGCTCGCCAGAGGAGCGCTACCGGCCGGACAGCCCCAGGGTCAAACAGGAGGGCCGTGGAGGTGGCTTTGACCCCAGTGGGCGGCCTCGCAGCGACAGACCCGGCTTCAGGTCCCCCAGCGGAGGAGAGGCGGCCAGAAACCGCCCAGATGGACTCAAACAACTACAGCCTGAGAGAAAGTCAGGAGAGTTCCCTGCTTACCTGCTGGGGGGGCAAGGGTCTGGGGGTCTGAAGAACTTTGTGATCCCCAAGATGAAGCGGGACGGCGGAGCTGTGGACGTGGCAGAAGGCTGGGGCCAGCCCCGGGTCAAGCTGGAGCGGCTGGGGGTTCGGGGGCTAGTGGACCACATAAGTAAGAGACCCAAGCCTGTCGTGGTGCTGCAGAAGCTCTCTTTTGATGAGGTGCAGAGGATCATCAGGGTTAAGGACCGTCACGGCTCCAAGTCTGGCAAGAACAGGTTCCTCTCAGGAAAGTCAGGCAAAGGTGGACTAGACCAGTCTGTTCTGGAAGAGCTTCCTCCTGAACTGTTGGCGGAGATGGAGTCCACCATGCCACTGTGCGAGAGGGTGAAGATGAACAAGCGTAAGCGGAGTACGGTCAAAGAGAAGCCCAAGTACACAGAGGTCGACTCAGACGACGATTCCAACGGGGAATCTGCCAGGAAGCGCCAGAGGAAGAACCGGGGGGACAAGGCCTGGGAGTATGAGCCGGAGCGGGAGAGGAGGGGCTCTGGAGACCATAGGCGGAGTAAGGGCTTCCAAGAGGGATGCAGAGGCTCAAACAGCTGCTACCGGGACTCTTCTGATGAGGAGTCGCCCCCACCCAGCATGAGTGACATTGCCAGGCAGATGAAGAAAAAAGAGAACCAGAAGAAGAGGAAAGCCTATGAGCCCAAGCTCACTCACCAGGAACTGATGGACTCGTCCACATTCAAAAGATTCTCCTCCAGCGTTGACAACATCCTAGAGAATCTGGAGGATGTGGACTTTACGCAGATGGACGACGATGAGATCCCACAGGAGCTGCTGCTGGGTAAACAGCAGTTGAACGAGCTGGGCAGCGAGTCGGCCAAGATCAAGGCCATGGGCATCACCTGCAGGATACCGTCAGATAAGCTGGTGAAGGTACTGAATATCCTGGAGAAAAACATCCAGGATGGGGCCAGGCTCTCGACACTCATGAGCCACgacaACGACGAAGATGAGGAGAAGCTGTGGCGAGACCTCATTATGGAGCGCGTGACCAAGTCGGCCGACGCCTGTCTGACGGCCCTCAACATCATGACGTCCGCCCACATGCCCAAGGCGGTATACATGGAGGACGTGATCGAGAGGGTTCTCCAGTACACCAAGTTCCACCTGCAGAACACCCTCTACCCCCAGTATGACCCTGTCTATAGGGTGGACCCTCACGGAGGTGGACTGCTGAGCTCCAAGGCCAAGCGGGCCAAGTGCTCCACCCACAAGCagcgggtcattgtcatgctgtacAACAAGGTGTGTGACATGGTCAGCAACATCTCTGAGCTGCTGGAGATTCAGCTGCTCACCGACACCACCATCCTCCAGATCTCCTCAATGGGTATCACCCCTTTCTTTGTGGAGAGTGTCAGTGAGCTGCAGCTGTGTGCCATCAAGCTGGTGACGGCGGTGTTCTCCCGCTATGAGAAGCACAGGCAGCTGATTCTGGAAGAGATCTTCACATCTCTGGCCAGACTACCCACCAGCAAACGCAGTCTCCGCAACTTCAGGCTGAACAGCAGCGACAGGGACGGCGAGCCCATGTATATCCAAATGGTTACAGCCCTGGTGCTACAGCTCATTCAGTGCGTGGTACACCTCCCAAACGACCGCGACGGCATGGAGGACGAGTACGACAGCAAGGTAGATCAGGACTTGCTGATCACCAACAACTACGAGACGGCCATGAGGACAGCCCAGAACTTCCTCTCGGTGTTCCTCAAAAAATGTGGCAGTAAGCAGGGGAGCGAGGAGGACTACAGGCCTCTGTTTGAGAACTTTGTCCAGGACCTGCTCTCCACGGTCAACAAGCCAGAGTGGCCTGCTGCCGAGCTACTGTTGAGCCTGTTAGGCAGACTGCTGGTGCACCAGTTCAGTAACAAGCAGACGGAGATGACCCTGAGGGTTGCCTCCCTGGACTATCTAGGCACGGTGGCCGCTCGCCTGCGCAAAGATGCCGTCACCAGCAAGATGGACCAGCGATCCATTGACCGCATCCTGaaagagACCCAAGGTGACGACGAGACCCAGCAACTGCAGAAAGCCCTTCTGGACTACATGGAGGAGAACACAGAGACCGACCCTTCACTATTGTTTGCCAGGAAGTTCTACATAGCGCAGTGGTTCCGCGACACCACCATAGAGACCGAGAAGACCATGAAGAGCCAGAAACGGGACCGGGAAGAGGACTCGTCGGACGGCCCTGGCCACCACGCCAAGGACATCGAGACCATTGGGGAGGTCATGCAGCGGGCCGAGGCACGCAAGAAGTTCCTCCGCAAGATCATAAAGACGGTCCCCTCCCATTTCACCACCCTGAGAATGAACTCTGACACGGTGGACTACGACGACTCCTGTCTCATCGTCCGCTACTTAGCCTCCATGAGGCCGTTCGCCCAGAGCTTTGATATTTACTTAACCCAGatcttgCGAGTGCTGGGGGAGAGTGCAATCGCTGTCCGGACAAAAGCCATGAAATGTCTGTCTGAGGTGGTTTCTGTGGATCCTAGCATTCTTTCCAGGttGGACATGCAGCGCGGAGTGCATGGCCGTCTGATGGACAACTCCACCAGCGTGCGCGAGGCGGCCGTGGAGCTTCTGGGCCGCTTCGTGCTGAGCCGACCCCAGCTCACTGAGCAGTACTACGACATGCTTATCGAGAGGATTCTGGACACGGGCATCAGCGTGAGGAAGAGGGTGATTAAGATCCTGAGAGACATCTGTCTGGAGCAGCCCACCTTCAACAAGATTACAGAGATGTGTGTGAGGATGATCCGTCGGGTCAACGACGAGGAGGGCATTAAGAAACTAGTAAACGAAACATTCCAGAAGCTGTGGTTCACCCCGACCCCGGCCCACGACAAAGACACTATGACCAGGAAGATTCTCAACATAACTGACGTGGTCACGGCTTGCAAAGACACGGGCTACGATTGGTTCGAGCAACTCCTTCAAAATctGTTGAAAGTGGAGGAAGACGCTGCCTACAAACCGGCCCAGAAGGCTTGTGTGCAGCTCGTGGACAATCTTGTGGAGCACATCCTCAAATACGAGGAGTCTCTTACAGAAAGTAAAGGGGTGAACTCCACGCGCCTGGTGTCCTGCATCACCACTCTCTTCCTGTTCAGCAAGATCCGGGCTCAGCTCATCGTCAAACACGCCATGACCATGcaaccctacctgaccaccaagTGCAATAACGCCAGCGACTTCATGGTGATCTGTAACGTGGCCAAGATCCTGGAGCTGGTGATCCCTCTGCTGGAGCACCCCTCTGAGACCTTCCTCACCACCATAGAGGAAGACCTCATGAAACTCATCATCAAATACGGCATGACGGTTGTCCAACACTGTGTCAGCTGCCTCGGTGCCGTGGTCAACAAGGTGACCCACAACTATAAGTTTGTGTGGTCTTGCTTTAACAGATACTATGGTGCTCTGACCAAGTTGAAGACGCAGCACCAGGAAGATCCCAACAGTACAGCTCTGGCTGCCAACAAGCCGGCCCTCCTGCGCTCCCTCTTCACCGTGGGAGCCTTGTGTCGACACTTTGAGTTCGACATGGAGGAGTTCAAGGGCATCACCAAGGTGGTAATCAAAGAGAAGGTGCTGGAGCTGCTTCTCTACTTTACCAAACATGAGGACGAGGAGGTGAAGACCAAGGCTATCATCGGCTTAGGCTTCCTGGTGATTATGCACCCTAGCCAGATGTTTTCCCCGGAGGTGAAGACCCTGTACAACGGAATCCTGGCCGACAGGAGCACCTCTGTCAACTTGAAGATCCAGGTGTTGAAGAACCTGCAGACCTATCTGCAGGAGGAGGACTCGCGCATGCAGGAGGCTGACCAGCAGTGGAAGAAGCTGTCCAAGCAGGAGGACCTGAAGGAGATGGGGGATATCTCATCGGGCATGAGCAGTTCCATCATGCAGCTGTACCTCAAGCAGGTGCTGGAAGCCTTCTTCCACACCCAGTCCAGCGTGCGCCACTTTGCCCTCAACGTCATCGCACTCACCCTCAACCAGGGCCTCATCCACCCCGTGCAGTGTGTACCGTATCTCATCGCCATGGGAACGGACCCCGAGCCCAGTATGAGAAACAAAGCGGACCAGCAGTTGGTGGAGATCGACAAGAAGTACACCGGATTCATTCACATGAAGGCAGTGGCTGGGATGAAGATGTCCTACCAGGTGCAGCAGGCCATCATGGCGTCCCGCAAGAGCATCATCCGAGGCTTCCGGCATGACGAGACCACCTCGGCCCTCTGCGCCCACCTCTTCTCCATGGTCCGAGGGAACCGGCAGCACCGGCGAGCCTTCCTCATCTCCCTGCTCAACCTGTTTGACGACAGCTCCAAGACTGAAGTGAACATGCTGCTGTTCATAGCCGACAACCTGGCCTGTTTCCCCTACCAGAGCCAGGAGGAGCCCCTCTTCATTATGCACCACATAGACATCACACTGTCTGTGTCCGGCAGCAACCTGCTGCAGACCTTCAAAGAGTCTCTGTTGAAGGAGCCGCGGCGCCGCGAGCCCAAAGTTAGAAAGGAGCGCCAGTCAAAGAACGGCTCTGGCGGGGAGGAGGACGAGGACAAGGAGATCTGTGACTCCCCCGGGAGCGATGAAAACTCAAACCCCGATGATGACGATGAGGTGGTGCGGCGGCCTAAGAAGTCCAAGAGGCCGGTGGCTGTGGAGGAACCCAGCTCGGAGTCGGATTTAGACCTGGAAGACCTGGACGTGGAAGATGTGGACCGGGTGATGCGGCGACTGCCTGAGAACGCCACGTCGCTCCTGGACTTTGCCAACGCCTCGCAGGGCATCCTGCTGCTCCTTGTGCTCAAACAGCACCTCAAGAACCTTTACAGCTTCTCAGACAGCAAAATCCAGAAGTACTCGCCGACTGAGTCAGCCAAAGTGTACGACAAGGCGGTGAACAGAAAGACAAACGTCCACTTCAAGCCCCGACAGACCATCGACTTCCTGTCCAACAACTGGGCCAACGTGGTGTTCACTCACGATATCAAGACGAGGATAGTCAAGCAGTACCTGGATTTCAAAACCCTGATGGAACACTTGGACCCagacgaggaggacgaggagggcGAGGCGGCACAGGCCAGCGCCAACATCCGGAACAAAGCCATAAGCGCACTGCTTGGAGGGGCCGGCCACGGGCATCTTGCACCAGTAGAGTATGATGAGGATGACGAGAGTGAAGAAGATGAGAGAAACCCTGGGtcctctcgGCGGGCGAGACGTTCGGGGGACCCCGGGAACCTCAACGAGAGCTTGGACTCTATGGACGTCATCGCCATCCATTGCCCCAAGCACAAGGACCGTCCGCAGCTCGCCCGGGTCATCCAGAAGATCAGCACAGGCTACAGCGTGCACTGGATGTCCGGCTCCTACTCTGGCCCCTGGGCTGACGCCAAGAAACGGGACGGACGCAAAACGGTGCCTTGGGTGGACACTATTAAGGAgtctgacatcatttacaaaaaAATCGCCTTGACCAGTAACCACAAACTGAGTAACAAAATGGCGCAGACTTTACGGTCACTGTACGCTGCCAAGGAGGGGACTTCCAGTTAATGAACCCTGCATTGAACCAACACACCCCCTATTTCTACGATCACATCCACCCACCGCCAAACCAGAGGGAAATGTTACTCAAACATTGTTGGAGGCTCCTTCGCTGTTGTGCAGCAGAACCTAGGTTGTTTCATTTCTACTCCCACTGTATTATAGGTTTAACACAAAACTACAAATGTTTATATCTCAGAAAAAAGAAAACATctgtaaagaaaaaaaaatagaataaaaTCTTACGTGAATGTTGGAAATTAGTCCTTTTGATGGTCTTATTAAAGTGTTTTTTGAATTTAAACTAGTACCCGGTGGCTTTCTTTAGCTTAGATATTCTCTGAGATCTGATTTTTTTGTTTACTTTTAATTGTCCATGCTGTTAAATGGCAGTCTTCTGGGTATAATTTATTATATTTCAAGCCACGCATGCAGTATCTGTGGGCTACTTGCAGGATGATATTTTGTAAAGGTAGATTTTGTTGTATAAGGTCACCCTAGTTGTAAGAGAACAATGGGATCCTAGTCCTTATGGTGGAACAAATACTGCAATAAATTTTCTACTTCTCTTTGTCA

Function

NR:

description
nipped-B-like protein A

GO: NA

KEGG:

id description
K06672 SCC2, NIPBL; cohesin loading factor subunit SCC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979360.1 True 8673 mRNA 0.55 48 9076197 9118856

Neighbor

gene id symbol gene type direction distance location
slc1a3a LOC106585918 coding upstream 19431 9022443 ~ 9056766 (+)
spef2 LOC106585910 coding upstream 91933 8937082 ~ 8984264 (+)
lifra LOC106585909 coding upstream 139315 8911352 ~ 8936882 (+)
LOC110525087 LOC106585905 coding upstream 1121473 7913507 ~ 7954724 (+)
gak gak coding upstream 1166230 7867713 ~ 7909967 (+)
LOC110525223 ndc80 coding downstream 112 9118968 ~ 9135047 (+)
LOC110525222 ndc80 coding downstream 22656 9141512 ~ 9163818 (+)
LOC110525088 LOC106585913 coding downstream 109714 9228570 ~ 9273994 (+)
opn4xb opn4x1a coding downstream 196952 9315808 ~ 9345530 (+)
pdlim5a pdlim5 coding downstream 232290 9351146 ~ 9477870 (+)
G470712 NA non-coding upstream 6953 9068946 ~ 9069244 (+)
G470705 NA non-coding upstream 25756 9049130 ~ 9050441 (+)
G470680 NA non-coding upstream 90387 8985589 ~ 8985810 (+)
G470678 NA non-coding upstream 93798 8981328 ~ 8982399 (+)
G470649 NA non-coding upstream 184347 8891630 ~ 8891850 (+)
G470725 NA non-coding downstream 6278 9125134 ~ 9125570 (+)
G470737 NA non-coding downstream 50713 9169569 ~ 9169871 (+)
G470780 NA non-coding downstream 124638 9243494 ~ 9244846 (+)
G471359 NA non-coding downstream 156168 9275024 ~ 9275684 (+)
G470599 NA other upstream 265254 8809973 ~ 8810943 (+)
G470292 NA other upstream 858923 8213280 ~ 8217274 (+)
LOC110525210 LOC106585898 other upstream 1432407 7608126 ~ 7652997 (+)
G469048 NA other upstream 1723619 7352186 ~ 7352578 (+)
ccl19a.1 LOC106585878 other upstream 2334704 6719880 ~ 6741493 (+)
G470770 NA other downstream 104495 9223351 ~ 9225513 (+)
G472364 NA other downstream 1161450 10280306 ~ 10281123 (+)
G473070 NA other downstream 2159482 11278338 ~ 11279265 (+)
G474321 NA other downstream 3069432 12188288 ~ 12190572 (+)

Expression


Co-expression Network