mpeg1.1 (mpeg1)


Basic Information

Item Value
gene id mpeg1.1
gene name mpeg1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10476333 ~ 10479220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605220.2
AGTCAAGTTAACAGTGATCTTGTGACTGAAACCTACTTTTAACACATCCGCTATTGAGAATCATCATATTCTTTCACCTTGTTCTCACAGCACCCACACATGACATAGCTATGGCATCTGACACAGCTCTGGGTCTGACAGCATTCACCTTGCTAGTTCTCTCCCTGCTCCACCAGTGTGTCCCTCACCCACTCACTCCTCCGAATAATGGACTTCGTAAGTGTCGCACCAACTTGTCCATTCCAGCCCTGGAGGTGCTCCCAGGAGGGGGATGGGACAACCTGAGGAACATGGACATGGGACGAGTCATGAACTTCAGCTTCTCCCAGTGCCAGACCACGGAGGATGGATTCTACCTCATCCCGGATGAGGTGTTTGTCATCCCACAGAAGCTCACTGGTGTGGAGACCAATTCTGAGATCATCAACACTTGGCTGGAACAGCGCAGCTCCACGTCTTTCTCAATCAACTCAGACGTGTCCTTCCTCTCCGTGCTCAATGCTAAGTTCTCCGTTGAGAATCAGCGGGTGAAGACTCACCAGGTCCATGGGAGCTCTGTCACCGCTCGTGTACAAGTGCGTAACTTCTTATACACGGTAAAGGCTCACCCTGACTTCACTCTGGATGGCCGCTTTGCCCACCAGGCTGAGGAGATCGCGGACGCGATAGAAAACAACCAGACTCGACAGGCAGTGTATTTATCTGAGAAGATGGTGTTGGACTATGGAACCCATGTGATAACAAGTGTTGATGCGGGGGCCGCCTTAGTGCAAGAGGACTATCTCCGTTCATCTTACGTGTCCGACAGTGAGACGGCGAAGTTCTCTGTTTCGGCATCGGCAGGTCTTAACTTCTTTGATAAAGTCAAATTTGACATTGGCAGCAAGGACACACAAGAGACATCCGAGTCACATAGTTATCAGGGCAACATCACCTACTCCATTATACAAAGCCATGGTGGGGCTCCCTTCTACCCAGGCATCACTTTGCAGAAGTGGCAGGAGAGCACCAAGAACAACCTGGTGGGCATCGACCGGGCAGGACTGCCTCTGCACTACTTCCTCAACCGGATTACCTTCCCCGATCTCCCTGAACCAACCATCGGCAAACTGGCACTGTCTGTTAGTCAGGCCATCCAGCGCTACTATACCGTTAACACACACCCTGGCTGCGTTAAACCGGACTCCAAGAACTTCAACTTCCAAGCCAATATGGACGACAGCTCCTGCGAGGGTCCGGCCACCAACCTCAGCTTCGGTGGGGTATTTCAGCAGTGCACCAAGCTCACTGGGGATGCAGACCCAATCTGCCAAGCCCTGGCTCAGAAGAACCCCGACACAGGCTCTTACTCATGTGGTCAGCCCTACAAAGCCACCCTGTTACGCtctgaggtgagagaggagagctaCAGCACGTATGAGTGCCACAGGCATTGCCATGGCTGCTGGCTGCTTTTAACCTGCTGCGACAATGTCTGTGGAGATTCCTACCATGTCCGCTCCGCTCGCATTGACACCTACTGGTGCTCCACCAATGAGGCAACCCCAGAGTTCTCAGGATACCTATTTGGGGGACTCTATAGCCCATCCCTGTTGAACCCTCTCACCAAAACTAAGAGCTGCCCTCCAAACTTCAACATTCAAATGAAGCTTCTGTCCAACGGTCTGATGATCTGCCTGAGCAATGACTATGAGACTTCCACCAGGTTTTCAGTCCCCTTTGGAGGCCTGTTCAGTTGCCAGTCTAACAACCCCCTTGCACAGGATCAACCCCGTTGCCCTCCCCAGTTCAGCCAGCACCTGGCTACTGTTAGTGATGGCTGCCAGGTGCTCTACTGTGTCCAGTCTGGCTTGTTCACAGGTGGCCAGCTGCTGCCTGTACGCTTGCCACCTTTCACTCGTCCTCCACTGATCAGCATGACTGCCACTAACACGGTGGCTGTGATGACCGAGGGAGATCGGGCGTGGGTCAGGGTGGGACAGACCAAGATGTGGAAGCTGGCCAAGGTGACAGAGATCCAGAGTATGGTGCAGGTGTTCGATCCAGCCTCGGGACAGATGACAGGGGGGCAGAAGTCTGGTGTGGCCTTTGGAGTAATTTGCTTGGTTGTCTTGGTGGTGGTTGGGGCTGTGCTGTTGGTGAGACGGAGGAGGGTCTCAaggtttgggagggagagaggatatgagGAGATCCACAGTGAGGGGCAGAGTGAGGGAGGTGTGGAGAGTCAAGAAGAGCAGGGCTCTGAGACAATGACCCAGACCCTGTTGCCATGAGACCACATTCTACACAGTTTACATATTAAGAAGAAAACAGCTTTGAGATAACTGTGCTGTATTGTATAATCAACCTCTCACTCTTGCTTTCCCTTTACGATCAATAATCTCAAATACTGGTAGGTATAAGATGGAAAATGTGCACAAATTTACTGCGACGCAAATTATTTAGAACAAGACACCAACGTGTTGGCAGCTTCCTGCCTTCACCAGGGatttactacacaatacattagtacacaacacaacacaacacaacacaacacaaca

Function

symbol description
mpeg1 Involved in defense response to Gram-negative bacterium and defense response to Gram-positive bacterium. Located in cytoplasmic vesicle. Implicated in primary immunodeficiency disease.

NR:

description
macrophage-expressed gene 1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605220.2 True 2546 mRNA 0.52 2 10476333 10479220

Neighbor

gene id symbol gene type direction distance location
LOC110525245 LOC106585833 coding upstream 15688 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 89988 10384908 ~ 10386345 (+)
LOC110525237 mex3c coding upstream 110639 10360765 ~ 10365694 (+)
bmpr1ba bmpr1b coding upstream 841252 9478107 ~ 9635081 (+)
pdlim5a pdlim5 coding upstream 998463 9351146 ~ 9477870 (+)
prf1.5 LOC106585834 coding downstream 910 10480130 ~ 10484335 (+)
LOC110525250 hpgds coding downstream 18538 10497758 ~ 10509129 (+)
LOC110525261 ap3s1 coding downstream 1059057 11538277 ~ 11561607 (+)
commd10 comda coding downstream 1083247 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 1265449 11744669 ~ 11744803 (+)
G472428 NA non-coding upstream 98585 10377513 ~ 10377748 (+)
G472380 NA non-coding upstream 167508 10308332 ~ 10308825 (+)
G472367 NA non-coding upstream 187840 10283633 ~ 10288493 (+)
G472336 NA non-coding upstream 237633 10238268 ~ 10238700 (+)
G472323 NA non-coding upstream 250915 10225216 ~ 10225418 (+)
G472483 NA non-coding downstream 8732 10487952 ~ 10488157 (+)
G472487 NA non-coding downstream 11973 10491193 ~ 10491405 (+)
G472669 NA non-coding downstream 98923 10578143 ~ 10578381 (+)
G472675 NA non-coding downstream 106091 10585311 ~ 10587239 (+)
G472724 grid2 non-coding downstream 175717 10654937 ~ 10658797 (+)
G472364 NA other upstream 195210 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 1202380 9228570 ~ 9273994 (+)
G470770 NA other upstream 1250820 9223351 ~ 9225513 (+)
G470599 NA other upstream 1665390 8809973 ~ 8810943 (+)
G470292 NA other upstream 2259059 8213280 ~ 8217274 (+)
G473070 NA other downstream 799118 11278338 ~ 11279265 (+)
G474321 NA other downstream 1709068 12188288 ~ 12190572 (+)
G474851 NA other downstream 2024540 12503760 ~ 12504119 (+)
G474949 NA other downstream 2233086 12712306 ~ 12713298 (+)
G475692 NA other downstream 2834459 13313679 ~ 13313969 (+)

Expression


Co-expression Network