LOC110525250 (hpgds)


Basic Information

Item Value
gene id LOC110525250
gene name hpgds
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10497758 ~ 10509129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605225.2
cggaagtggtggctggtgtgcacgcctcctgagtcatACTAGAGGTCCACTctgaatacctcttctccaccgGATACGTCTTGGGGCAGCCTCTGGCATAAGTTCAATTGTCCTCAGGATGCAATTAGGGAAAGTTGTATTTCTGGTTGTAATGCTTGTGAGTTACCGCCGCTtcgatatccaaaagttatttatGGTATTTAATTAAACAAAAaacattctgggctaataatgtaaaatATAGCACACACAAAAAcctaaatactgcaaagttgcttaggagctagaagcagagctgccatgtctgttggCACCATCTTCATTCATGTGCAAGCCAACTTTGTTCAGTTGTAGTTGAGTTTGTTCTATTGGCATGCTACCTTCATGATAAGTTCTGCATCTTAGCTAGCATGAGTATTTGTATCTTCCTGTCACACTCACATAGTCTAGTCCATTGTTTTTGCTGCCAACCTAGGCTTTCAATACACCTCCTAAACTCATGAATATTCTATGAGGGGGTGTGTACTTCAGGATATGaacaaagcaaaaaaagaaaataaaacatttcataaATTGTGTTATTTGTTTTCTTTTATTCCATGTCCAATTTTGACACAATAAATGAGAAAACAGGTCGATTTAAGGGTTTTGTTTTTAAAATGCAGAAAACGAAAACGAGTTGGTTTTTTTCGAAGTCGCCTTATTCATACACATATGGGTCACCAGGTCTCAGTTCGGGGGTGGATCACTTATCCTCACTCACAATTGCACTGCATAACCTTTCAAACTGCATTCCAACTCCGCAGGAGCAATGACATCCTACAAGCTCACCTATTTCAACATGCGAGGTAGAGCAGAGCTGCCTCGGTATATCTTTGCCTATGCTGGAATAGCCTTCGAGGATCGACGGGTAGAGTGGAGAGACTGGCCATCGATCAAGAAGAGACTTGTGGGTAACAGCAGACTAGCCGAGGCCCAGGCAGACGCTCTGGTCGACACTCTCAACGACTTCACCCTCTTAATCCCATGGAGAGAGGACAACCCACAGATCAAAACACAGAAGATTGACATGCTTTTCCAAAGCCACGCCCCCAAGTTACTGGACCATCTCCAGTGTCATTTGGGAGACAGGAAGTGGTTAGTGGGTGATTCGGAGACCTGGGCTGATCTGTACTGCCATGTGTGCTTCACTACCTTCAGTGTGCTGAGACCGGGCTTTGCTGATCACCATCCTGCCCTGTGTGGCCTGACTGACCGGGTGGAGGCCATCCCGAACATCGCTAAGTGGATCCAGTGCAGACCTACAACAGAGTTCTAAAACCTGAGCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGATCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGAGCCCAGTTCAGTAGGGA
>XM_021605223.2
gctggtgtgcacgcctcctgagtcatACTAGAGGTCCACTctgaatacctcttctccaccgGATACGTCTTGGGGCAGCCTCTGGCATAAGTTCAATTGTCCTCAGGATGCAATTAGGGAAAGTTGTATTTCTGGTTGTAATGCTTGTGAGTTACCGCCGCTtcgatatccaaaagttatttatGGTATTTAATTAAACAAAAaacattctgggctaataatgtaaaatATAGCACACACAAAAAcctaaatactgcaaagttgcttaggagctagaagcagagctgccatgtctgttggCACCATCTTCATTCATGTGCAAGCCAACTTTGTTCAGTTGTAGTTGAGTTTGTTCTATTGGCATGCTACCTTCATGATAAGTTCTGCATCTTAGCTAGCATGAGTATTTGTATCTTCCTGTCACACTCACATAGTCTAGTCCATTGTTTTTGCTGCCAACCTAGGCTTTCAATACACCTCCTAAACTCATGAATATTCTATGAGGGGGTGTGTACTTCAGGATATGaacaaagcaaaaaaagaaaataaaacatttcataaATTGTGTTATTTGTTTTCTTTTATTCCATGTCCAATTTTGACACAATAAATGAGAAAACAGGTCGATTTAAGGGTTTTGTTTTTAAAATGCAGAAAACGAAAACGAGTTGGTTTTTTTCGAAGTCGCCTTATTCATACACATATGGGTCACCAGGTCTCAGTTCGGGGGTGGATCACTTATCCTCACTCACAATTGCACTGCATAACCTTTCAAACTGCATTCCAACTCCGCAGGAGCAATGACATCCTACAAGCTCACCTATTTCAACATGCGAGGTAGAGCAGAGCTGCCTCGGTATATCTTTGCCTATGCTGGAATAGCCTTCGAGGATCGACGGGTAGAGTGGAGAGACTGGCCATCGATCAAGAAGACCTTTCCATTAGGAAAGCTCCCAGTGCTAGAGGTGAATGGACTCCCTCTGACCCAGAGTCTGGCCATTGCACGGTTCCTGGCAAAGGAAGcagGACTTGTGGGTAACAGCAGACTAGCCGAGGCCCAGGCAGACGCTCTGGTCGACACTCTCAACGACTTCACCCTCTTAATCCCATGGAGAGAGGACAACCCACAGATCAAAACACAGAAGATTGACATGCTTTTCCAAAGCCACGCCCCCAAGTTACTGGACCATCTCCAGTGTCATTTGGGAGACAGGAAGTGGTTAGTGGGTGATTCGGAGACCTGGGCTGATCTGTACTGCCATGTGTGCTTCACTACCTTCAGTGTGCTGAGACCGGGCTTTGCTGATCACCATCCTGCCCTGTGTGGCCTGACTGACCGGGTGGAGGCCATCCCGAACATCGCTAAGTGGATCCAGTGCAGACCTACAACAGAGTTCTAAAACCTGAGCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGATCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGAGCCCAGTTCAGTAGGGA
>XM_036979388.1
TAAGCAGATCACTTCAATCACATTGACAAGACAATTAGCTACTGAGGAGTTATGAGCTAATAGAGGAGCTATGAGAAAAAATCGGTATGTGACTGTATGGACTTTATGATCCCGACCCCTATTTACCCTGGTATGGCCCCGATTTCCAGTGTTGTAGGTACCAACTCGGGGGAAtgtttgaatcaacgtggaaaagtCACCAACGTAAGGGAACCTTTCCATTAGGAAAGCTCCCAGTGCTAGAGGTGAATGGACTCCCTCTGACCCAGAGTCTGGCCATTGCACGGTTCCTGGCAAAGGAAGcagGACTTGTGGGTAACAGCAGACTAGCCGAGGCCCAGGCAGACGCTCTGGTCGACACTCTCAACGACTTCACCCTCTTAATCCCATGGAGAGAGGACAACCCACAGATCAAAACACAGAAGATTGACATGCTTTTCCAAAGCCACGCCCCCAAGTTACTGGACCATCTCCAGTGTCATTTGGGAGACAGGAAGTGGTTAGTGGGTGATTCGGAGACCTGGGCTGATCTGTACTGCCATGTGTGCTTCACTACCTTCAGTGTGCTGAGACCGGGCTTTGCTGATCACCATCCTGCCCTGTGTGGCCTGACTGACCGGGTGGAGGCCATCCCGAACATCGCTAAGTGGATCCAGTGCAGACCTACAACAGAGTTCTAAAACCTGAGCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGATCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGAGCCCAGTTCAGTAGGGACCCAGAGCAGACCTACAACAGAGTTGTAAAACCTGAGCCCAGTTCAGTAGGGACAAAACAGGATAAATGTTCTGAAGCTT

Function

symbol description
hpgds Enables metal ion binding activity; prostaglandin-D synthase activity; and protein homodimerization activity. Involved in prostaglandin metabolic process. Located in cytosol and nucleoplasm.

NR:

description
hematopoietic prostaglandin D synthase isoform X1

GO: NA

KEGG:

id description
K04097 HPGDS; prostaglandin-H2 D-isomerase / glutathione transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605225.2 False 1448 mRNA 0.45 4 10497758 10509049
XM_021605223.2 False 1530 mRNA 0.46 5 10497769 10509049
XM_036979388.1 True 890 mRNA 0.50 5 10498718 10509129

Neighbor

gene id symbol gene type direction distance location
prf1.5 LOC106585834 coding upstream 13423 10480130 ~ 10484335 (+)
mpeg1.1 mpeg1 coding upstream 18538 10476333 ~ 10479220 (+)
LOC110525245 LOC106585833 coding upstream 37113 10459637 ~ 10460645 (+)
aptx LOC100136186 coding upstream 111413 10384908 ~ 10386345 (+)
LOC110525237 mex3c coding upstream 132064 10360765 ~ 10365694 (+)
LOC110525261 ap3s1 coding downstream 1029148 11538277 ~ 11561607 (+)
commd10 comda coding downstream 1053338 11562467 ~ 11604688 (+)
LOC118965115 NA coding downstream 1235540 11744669 ~ 11744803 (+)
LOC110525262 dmxl1 coding downstream 1236884 11746013 ~ 11809089 (+)
LOC110525265 LOC106585816 coding downstream 1315230 11824359 ~ 11837872 (+)
G472487 NA non-coding upstream 6353 10491193 ~ 10491405 (+)
G472483 NA non-coding upstream 9601 10487952 ~ 10488157 (+)
G472428 NA non-coding upstream 120010 10377513 ~ 10377748 (+)
G472380 NA non-coding upstream 188933 10308332 ~ 10308825 (+)
G472367 NA non-coding upstream 209265 10283633 ~ 10288493 (+)
G472669 NA non-coding downstream 69014 10578143 ~ 10578381 (+)
G472675 NA non-coding downstream 76182 10585311 ~ 10587239 (+)
G472724 grid2 non-coding downstream 145808 10654937 ~ 10658797 (+)
G472725 NA non-coding downstream 148822 10657951 ~ 10659561 (+)
G472800 NA non-coding downstream 296895 10806024 ~ 10806342 (+)
G472364 NA other upstream 216635 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 1223805 9228570 ~ 9273994 (+)
G470770 NA other upstream 1272245 9223351 ~ 9225513 (+)
G470599 NA other upstream 1686815 8809973 ~ 8810943 (+)
G470292 NA other upstream 2280484 8213280 ~ 8217274 (+)
G473070 NA other downstream 769209 11278338 ~ 11279265 (+)
G474321 NA other downstream 1679159 12188288 ~ 12190572 (+)
G474851 NA other downstream 1994631 12503760 ~ 12504119 (+)
G474949 NA other downstream 2203177 12712306 ~ 12713298 (+)
G475692 NA other downstream 2804550 13313679 ~ 13313969 (+)

Expression


Co-expression Network