LOC110525094 (grid2)


Basic Information

Item Value
gene id LOC110525094
gene name grid2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 10587304 ~ 11241192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979367.1
tccctctccctgactcCGTCAGTCATCCTTCCAGGTAACTCTGGTCCAGACAATGCGCGGCTGGCAACTGCTGCTGTCCGTGTAGTTGGCTCTCTACAGGGCCTTCTCCCACACAGTATACCTCATCCTCCGACTGCTAGAGACAATCCGCATGCGGAGCGGTCATCGCGCGCACCGTGGCGAATTTTCACTTGATTTTCTGTCGCAGAAAAGAGTGGTCCCTATAGCTTGCCAGTATTTCGGAATATGGTGGTCCTTGTTAAATATGAATGAGTTCTCATTTTTTACGTCTTAAATGTCAGTGATGGATACAGTTTTAGAATCCGCATGAAAATTGAAGTTTTGCGTTTCGTTTTATTCATTAAAGCTGGGAAAATGCGTCGTGTCTGAGGCAGAATCTACGGTCTCGACCAAATCAGCCCAGGACCTGCGTATGAGAAAAGCAAACCCGTGCTTTCCTAATATTTAGCAAACATTGCATTTGGCTTGCATTCATCCCCAGTTTTGGATTGATCGGATGCGTCAGCGTTGGAAGCGGCTGTGGAGAACCCCATAGCTTTCGGCATGATTTGATGTAACTGGATTTTTTAACAGGGTAACTGGATATCTCTTACCTTTTAACTGAGAACAGCTACATTCAAGTCAAGAAGCAAACTCCATCAAGAGATAGATCCATCCCTATATGGACTAAATCTTGGTTCTTCGGGATTTAAAACTAGCAAATCACACGCATCTTGTTCGGCGCTTCTTGGGAAAATAGCCTTAAACTGTGGGAGACATGAAAGTTGTTTCAGCAGTGTTGTTCCTTGCCATATTTTGGAGTCAGGAGTGGGAGCCCGTGCTTTCTGATTCAATCATACACATCGggGCCATCTTTGATGAGTCTGCCAGGAAGGACGACGAGGTGTTCCGCATGGCCGTGGCGGACCTCAACCTCAACAACGAGATCCTGGAGACGGAGAAGATCACCATCTCCGTGGAGTTTGTGGATGGGAACAACCCTTTCCAGGCAGTCCAGGAAGCCTGTGAGTTGATGAACAGGGGGATCCTGGCTCTTATTAGCTCAGTTGGCTGTATGTCGGCGGGCTCCCTGCAGACGCTGGCGGACGCCATGCACATCCCGCACCTGTTCATCCAGCGTGCCCCCGCCGGCACCCCTCGCTCCAGCTGTCCCCTCGTCAGCCGCGGTCGCCAGGACGACTACACCCTCTTCGTTCGCCCGCCCGTCTACCTCAACGACGTCATCCTCCAAGTGGTCAGCGAGTACAGCTGGCAGAAGTTCATCATCttctacgaccaggaatacgATATCCGTGGGATCCAGGACTTCCTGGACAAGACGTCTCAGCAGGGAATGGACGTGTCGCTGCAGAAGGTGGAGTCCAACATCAACATGATGATCACCAGCATGTTCAGAACCATGAGGGTGGAGGAGCTCCACCGCTACCGGGACACGCTGCGCCGGGCCGTGCTCTTTATGAGTCCCGTCACCGCCAAGGCCTTTATcactgagGTTGTGGAGACGAATCTCATGGCATTCGACTGTCACTGGATCAGCATCAATGAGGAAATCTCAGACCAGGACGTCCAAGAACTGGTGATGAAGTCAATTGGGCGTCTGACCCTGATCAGGCAGACCTTCCCCCTGCCCCAGAACACCAGCCAGCGCTGTGTCAAGCACAACCACCGCATCAACACCTCCCTCTGCGACCCCAAGGACCCCAAAGCTCAGACACTGGagATCACCAACCGCTACATCTACGACACAGTGCTGCTATTGGCCAACACTTTCCACAGGAAGCTGGAGGACAGGAAGTGGCACAGCATGGCCAGCCTCACCTGTATCCGCAAGAACTCTAAGCCCTGGCAAGGTGGACGGCCTATGCTGGACAATGTCAAAAAGTCTGGAGTGAGTGGTTTGACTGGCTTCCTGGAGTTTACAGACAACGGAACCAACCCCAACATCTACTTTGAGATCCTGGGGACCAACTATGGCGAGGACAGGGGCAGGGGTGTCAGTAAGCTGGCCACCTGGGACCCAGTGCACGGCCTCAACGGAACGCTGACAGACAGGAAGCTGGAGAACAACATGAGGGGCGTGGTTCTGCGAGTGGTCACTGTCCTGGAGGAGCCCTTTGTGATGGTGTCAGAGAATGTCCTTGGGAAGCCTAAGAAGTACCAAGGTTACTCCATCGACGTACTGGATTCCCTCTCTAACTACCTGGGCTTCAAGTACGAGATCTATGTGGCCCCTGACCATAAGTACGGGAGCCAACAGTCCGACGGGGTCTGGAACGGACTGATGGGAGAGCTGGTCGCCAAGcGGGCAGACGTGGGTCTCTCGGCTCTCACCATCACGCCAGAACGGGAGAGTGCGGTGGACTTCACCACACGCTACATGGACTACTCGGTGGGTGTGCTGCTCAGGAAGGCCGAGCGTACCGTGGACATGTTCGCCTGCCTAGCGCCTTTTGACCTGTCGCTGTGGGCGTGCATTGCGGGCACCGTGCTGCTGGTGGGCATCCTGGTCTACCTACTCAACTGGCTGAACCCGCCGCGTCTGCCCATGGGTGCTGTCTCCTCCACCACCTTCTACAATTCCATGTGGTTCGTCTATGGATCCTTCGTCCAGCAGGGGGGTGAGGTTCCGTATACCACCCTGGCCACGAGGATGATGATGGGGGTATGGTGGCTCTTTGCTCTGATCGTCATCTCCTCCTACACGGCCAACCTGGCTGCCTTCCTCACCATCACCCGCATCGAGAACTCTATCCAgtCTCTCCAAGATCTTTCCAAGCAGACAGAGTTGCCGTACGGGACGGTGTTGGACTCGGCTGTGTATGAGCAGGTGCGCAGTAAGGCCATGAACCCCTTTGAGAGGGACCCCATGTACTCCCAGATGTGGCGCATGATCAACCGCACCGGAGGGGCGGAAAACAACGTGGACGAGTCCAAGGAGGGCATCCGCAAGGTGAAGTACGGGCGTTTTGCCTTTGTGTGGGATTCGGCAGTGCTGGAGTATATGGCCATCAACGATGAGGACTGCTCCTTCTACACTGTAGGGAGCAATGCACCAGATCGGGGCTACGGCTTCGCCATGCAGCACGGCAGTCCATACAGGGACATCTTCTCCCAGAGGATCCTGGAGCTGCAGCAGAACGGGGACATGGACATCCTGAAACTGAAGTGGTGGCCCCGGGACAGCCCATGTGACCTGTACTCAGCGGTGCACACCAAACACCGCGGCAGTGCCCTGGACATCCACAGCTTCGCCGGCGTGTTCTGCGTGCTAGCGGCCGGAGTGGTGCTCTCCTGTGTCATTGCCATGGTGGAGACCTGGTGGACTAGGAGGAAGGGCTCACGAGTCCCCTCCAAGGAGGACGATAAGGAGATTGACCTGGAGCACCTTCACCGCCGGGTTAACAGCCTGTGCGCGGAGGACGACAGCCCCCACAAGCAGTTCTCCACCTCCTCTATTGACCTGACGCCCCTGGACATGGACTCTATGCCGGCTGCCCGGCAGGCCCTGGAACAGATCAGCGACTTCCGCAACAcgcacatcaccaccaccaccttcatCCCCGAGCAGATCCAGACCCTCAGCCGCAGCCTGTCCACCAAGGCCCAACAGGGCTTCGCCTTCGGTCCCGTGCAGGACCACCGGACTGGGGGAACCTTCAGGCAGAGAGCCCCCAACGGTGGCTTCTTCCGCAGTCCCATCAAGACAATGTCCTCCATACCCTACCAGCCCACTCCCCAGCCCAACTTCAGCTACGGCAACGACCCCGATCGGGGTACATCcatatgaggaggaggaggaggccacATAGTGAGAGAGATGTAAACAAATACACTCACAAAGCTCTATGTACATAGGAATTTTTcagttcagttttttttttttttgggg
>XR_005052012.1
tctccctctccctgactcCGTCAGTCATCCTTCCAGGTAACTCTGGTCCAGACAATGCGCGGCTGGCAACTGCTGCTGTCCGTGTAGTTGGCTCTCTACAGGGCCTTCTCCCACACAGTATACCTCATCCTCCGACTGCTAGAGACAATCCGCATGCGGAGCGGTCATCGCGCGCACCGTGGCGAATTTTCACTTGATTTTCTGTCGCAGAAAAGAGTGGTCCCTATAGCTTGCCAGTATTTCGGAATATGGTGGTCCTTGTTAAATATGAATGAGTTCTCATTTTTTACGTCTTAAATGTCAGTGATGGATACAGTTTTAGAATCCGCATGAAAATTGAAGTTTTGCGTTTCGTTTTATTCATTAAAGCTGGGAAAATGCGTCGTGTCTGAGGCAGAATCTACGGTCTCGACCAAATCAGCCCAGGACCTGCGTATGAGAAAAGCAAACCCGTGCTTTCCTAATATTTAGCAAACATTGCATTTGGCTTGCATTCATCCCCAGTTTTGGATTGATCGGATGCGTCAGCGTTGGAAGCGGCTGTGGAGAACCCCATAGCTTTCGGCATGATTTGATGTAACTGGATTTTTTAACAGGGTAACTGGATATCTCTTACCTTTTAACTGAGAACAGCTACATTCAAGTCAAGAAGCAAACTCCATCAAGAGATAGATCCATCCCTATATGGACTAAATCTTGGTTCTTCGGGATTTAAAACTAGCAAATCACACGCATCTTGTTCGGCGCTTCTTGGGAAAATAGCCTTAAACTGTGGGAGACATGAAAGTTGTTTCAGCAGTGTTGTTCCTTGCCATATTTTGGAGTCAGGAGTGGGAGCCCGTGCTTTCTGATTCAATCATACACATCGggGCCATCTTTGATGAGTCTGCCAGGAAGGACGACGAGGTGTTCCGCATGGCCGTGGCGGACCTCAACCTCAACAACGAGATCCTGGAGACGGAGAAGATCACCATCTCCGTGGAGTTTGTGGATGGGAACAACCCTTTCCAGGCAGTCCAGGAAGCCTGTGAGTTGATGAACAGGGGGATCCTGGCTCTTATTAGCTCAGTTGGCTGTATGTCGGCGGGCTCCCTGCAGACGCTGGCGGACGCCATGCACATCCCGCACCTGTTCATCCAGCGTGCCCCCGCCGGCACCCCTCGCTCCAGCTGTCCCCTCGTCAGCCGCGGTCGCCAGGACGACTACACCCTCTTCGTTCGCCCGCCCGTCTACCTCAACGACGTCATCCTCCAAGTGGTCAGCGAGTACAGCTGGCAGAAGTTCATCATCttctacgaccaggaatacgATATCCGTGGGATCCAGGACTTCCTGGACAAGACGTCTCAGCAGGGAATGGACGTGTCGCTGCAGAAGGTGGAGTCCAACATCAACATGATGATCACCAGCATGTTCAGAACCATGAGGGTGGAGGAGCTCCACCGCTACCGGGACACGCTGCGCCGGGCCGTGCTCTTTATGAGTCCCGTCACCGCCAAGGCCTTTATcactgagGTTGTGGAGACGAATCTCATGGCATTCGACTGTCACTGGATCAGCATCAATGAGGAAATCTCAGACCAGGACGTCCAAGAACTGGTGATGAAGTCAATTGGGCGTCTGACCCTGATCAGGCAGACCTTCCCCCTGCCCCAGAACACCAGCCAGCGCTGTGTCAAGCACAACCACCGCATCAACACCTCCCTCTGCGACCCCAAGGACCCCAAAGCTCAGACACTGGagATCACCAACCGCTACATCTACGACACAGTGCTGCTATTGGCCAACACTTTCCACAGGAAGCTGGAGGACAGGAAGTGGCACAGCATGGCCAGCCTCACCTGTATCCGCAAGAACTCTAAGCCCTGGCAAGGTGGACGGCCTATGCTGGACAATGTCAAAAAGTCTGGAGTGAGTGGTTTGACTGGCTTCCTGGAGTTTACAGACAACGGAACCAACCCCAACATCTACTTTGAGATCCTGGGGACCAACTATGGCGAGGACAGGGGCAGGGGTGTCAGTAAGCTGGCCACCTGGGACCCAGTGCACGGCCTCAACGGAACGCTGACAGACAGGAAGCTGGAGAACAACATGAGGGGCGTGGTTCTGCGAGTGGTCACTGTCCTGGAGGAGCCCTTTGTGATGGTGTCAGAGAATGTCCTTGGGAAGCCTAAGAAGTACCAAGGTTACTCCATCGACGTACTGGATTCCCTCTCTAACTACCTGGGCTTCAAGTACGAGATCTATGTGGCCCCTGACCATAAGTACGGGAGCCAACAGTCCGACGGGGTCTGGAACGGACTGATGGGAGAGCTGGTCGCCAAGcGGGCAGACGTGGGTCTCTCGGCTCTCACCATCACGCCAGAACGGGAGAGTGCGGTGGACTTCACCACACGCTACATGGACTACTCGGTGGGTGTGCTGCTCAGGAAGGCCGAGCGTACCGTGGACATGTTCGCCTGCCTAGCGCCTTTTGACCTGTCGCTGTGGGCGTGCATTGCGGGCACCGTGCTGCTGGTGGGCATCCTGGTCTACCTACTCAACTGGCTGAACCCGCCGCGTCTGCCCATGGGTGCTGTCTCCTCCACCACCTTCTACAATTCCATGTGGTTCGTCTATGGATCCTTCGTCCAGCAGGGGGGTGAGGTTCCGTATACCACCCTGGCCACGAGGATGATGATGGGGGTATGGTGGCTCTTTGCTCTGATCGTCATCTCCTCCTACACGGCCAACCTGGCTGCCTTCCTCACCATCACCCGCATCGAGAACTCTATCCAgtCTCTCCAAGATCTTTCCAAGCAGACAGAGTTGCCGTACGGGACGGTGTTGGACTCGGCTGTGTATGAGCAGGTGCGCAGTAAGGCCATGAACCCCTTTGAGAGGGACCCCATGTACTCCCAGATGTGGCGCATGATCAACCGCACCGGAGGGGCGGAAAACAACGTGGACGAGTCCAAGGAGGGCATCCGCAAGGTGAAGTACGGGCGTTTTGCCTTTGTGTGGGATTCGGCAGTGCTGGAGTATATGGCCATCAACGATGAGGACTGCTCCTTCTACACTGTAGGGAGCAATGCACCAGATCGGGGCTACGGCTTCGCCATGCAGCACGGCAGTCCATACAGGGACATCTTCTCCCAGAGGATCCTGGAGCTGCAGCAGAACGGGGACATGGACATCCTGAAACTGAAGTGGTGGCCCCGGGACAGCCCATGTGACCTGTACTCAGCGGTGCACACCAAACACCGCGGCAGTGCCCTGGACATCCACAGCTTCGCCGGCGTGTTCTGCGTGCTAGCGGCCGGAGTGGTGCTCTCCTGTGTCATTGCCATGGTGGAGACCTGGTGGACTAGGAGGAAGGGCTCACGAGTCCCCTCCAAGGAGaTAAGTACACTGTGTTGAGGGTAAAGCGGGCGAGGGAGAGCAATACAAAATGCCATTTTTACATCTCACCCTTCCAGGACGATAAGGAGATTGACCTGGAGCACCTTCACCGCCGGGTTAACAGCCTGTGCGCGGAGGACGACAGCCCCCACAAGCAGTTCTCCACCTCCTCTATTGACCTGACGCCCCTGGACA

Function

symbol description
grid2 Predicted to enable ionotropic glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ionotropic glutamate receptor signaling pathway. Predicted to be integral component of plasma membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain and eye. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 18. Orthologous to human GRID2 (glutamate ionotropic receptor delta type subunit 2).

NR:

description
PREDICTED: glutamate receptor ionotropic, delta-2 isoform X1

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
K05387 GRIP; glutamate receptor, ionotropic, plant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979367.1 False 3910 mRNA 0.55 16 10587304 11241190
XR_005052012.1 True 3576 mRNA 0.55 17 10587717 11241192
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110525006 atoh1 coding downstream 7640 10577529 ~ 10579664 (-)
LOC118964796 NA coding downstream 23940 10534755 ~ 10563364 (-)
LOC110525249 smarcad1 coding downstream 53001 10509330 ~ 10534303 (-)
tspan36 LOC106585832 coding downstream 129363 10449684 ~ 10457941 (-)
LOC110525243 mapk4 coding downstream 145963 10418378 ~ 10441341 (-)
LOC118964797 NA coding upstream 35992 11277184 ~ 11279926 (-)
LOC110525252 ccser1 coding upstream 39623 11280815 ~ 11390675 (-)
LOC110525254 trim36 coding upstream 150748 11391940 ~ 11418709 (-)
pggt1b pggt1b coding upstream 178587 11419779 ~ 11440310 (-)
LOC110525258 ccdc112 coding upstream 203923 11445115 ~ 11460217 (-)
G473181 NA non-coding downstream 66 10585314 ~ 10587238 (-)
G472620 NA non-coding downstream 94078 10492884 ~ 10493226 (-)
G472617 NA non-coding downstream 98866 10488235 ~ 10488438 (-)
G472573 NA non-coding downstream 122327 10400499 ~ 10464977 (-)
G473591 NA non-coding upstream 48729 11289921 ~ 11290163 (-)
G473593 NA non-coding upstream 53806 11294998 ~ 11295305 (-)
G473595 NA non-coding upstream 57259 11298451 ~ 11298801 (-)
G473596 NA non-coding upstream 57799 11298991 ~ 11299223 (-)
G473599 NA non-coding upstream 61525 11302717 ~ 11302960 (-)
G472576 mpeg1 other downstream 107458 10476409 ~ 10479846 (-)
G472539 NA other downstream 211227 10373852 ~ 10376077 (-)
G470834 NA other downstream 2288883 8296569 ~ 8298421 (-)
G469751 NA other downstream 2932686 7652639 ~ 7654618 (-)
G469411 NA other downstream 3422732 7159458 ~ 7164572 (-)
G473930 NA other upstream 360323 11601515 ~ 11601997 (-)
G474030 NA other upstream 501010 11742202 ~ 11742758 (-)
LOC110525267 LOC106585853 other upstream 714074 11955217 ~ 11979397 (-)
G474614 NA other upstream 787967 12029159 ~ 12029610 (-)

Expression

LOC110525094(grid2) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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LOC110525094(grid2) Expression in each Bioproject

Bar chart with 21 bars.
LOC110525094(grid2) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network