LOC110525258 (ccdc112)


Basic Information

Item Value
gene id LOC110525258
gene name ccdc112
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11445115 ~ 11460217 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605240.2
GCCAGCAAACGATACTCTACACAATATTATTTTAACGTTGAGTAAAACTTATAAGCTTCTTCGCTAAGAACAAAGGAAACCAAAATAGCTAACCGGCCAGCCAGGTTGCCAACAACAAACACAGAAGGTGACTTCATCACAGCTACTCACCACAATGCACAACGTTTGGAAGATAGAGTTTCCCAACAAAAGACAGAGTTTCTCAGAAATGCAGAGAAACTCAGAAAACAGATTGAGAAACTTGAGAAAGAGAAGATGTTGAATACACAAAACAGGAAGAATGGTCTTTCAGATGGATTTAGAGTATTGGAAGAGTTTGATAAAGGTCTTCAGGATGATCGAAATACTGAGCAAATGAACGTGCAAAAGCATCTGATGAAAATCCATAATGGTGTAAATAAATTTCAGATGCAGCTGACTGACGTGAAGCCTACCCCTGAGTTAATTGAGAAACTGAAAGACATAATGACAGAAGTTGAAAATTCAATCAACACTTTCAAGGGGGATCAACGTCAAAGttTTGAGGATCTATTGAAAGAGGAAAGAACATGCAGCCAGGAGATATGTGCTTTTGAAAAGAAGATTGAGACTTGGTCTTTGGCTGTAAAAGCAGACCCAAAGTTGCCCCCTGCTCCCCCAGGCAAGGTGTGTCTGGCCAAAGCCCTAGAGGAAGACCTCCCACCAGAGGTGACCGCACTAGAGAGGTTCCTGCAGCAAACTGGAGGGAAGCAGGGGGGCTGGGACCAGTATGACCATCAGAGCTTTCTGAAAGTGTGGACCAAGCACAATGGCAAACCAGCCTATAGGAAAGAGGCTTTGCTCTACCTGCCAGGCAGAACCCCAGACAATGTTGAACAGCATGAAGATTGGTATCTTGAGCTCCTGTACCTccaggagaagaagaaagagGCCATTTACCGGTGGAAGGTtgagagacagcaggagagggcTGCAAGGCTGCAGCACCAGGATGAGCTGGAGAACGTTgccaggagggagagggaggcgcAGGCTGAGACCCAGCAGCGTagggctgaggaggagaggagggaggcggTGGCTCGCCTGGAAGGGTGGAAAAGGCAGCGCAGGCTGCgcctggagcaggaggaggagcagaggctCACTGGGGAGATCCTGCAGCGTAGACAAGCCAAGGAGGAGCGCAGGAGACAGCTGGAGGTGAAGCTGGTTCTGGAGGCCCACATTCGgcagaagaaggaggaggaagaacttCTGACCATGCAGAAGGAGGAACAGGAACAGGCTGACATGGAGGAGAAGAAAAGACTGGCAGGCTACTGCATCAAACGCTTTCAGGAAAGGGACTTCCAGAAGTTGGAGACAAAAGTGCAGGAGAAACAGGAGAAGGAAAAGCAGGAGCTGGATAGACAAAAGAGACTGGCTAAGCTGAAGGAGAAGGCAGAGGCTCATATCAGCAGAGACCCTTCCAGGCTTTGCAAACCCACCAAAGGATGGGAGGAACGCACCAAAGAGATTGGACCCACTGGGGGCGGACCTGTATTACAGATGTTTCATAGGGCTGTCCCAAGCTGGAGACAAGGCTTATGAGGATGTCTGACTGGAACCAATATTTTCTATGCTAATTTGATTTTTATTTAATCATGCAAAATTCAATCCTCAGTGTGGTTATTTGTCATTTCAACACACTTGTATCTGTGCTTTGTGTCATTTCCACTTTTAAACAATACATTATCACATTTCTTATCTGAATTAAAACATGAATATCTGTCGGCCTA
>XM_021605238.2
tattatatttatttttttgacgaaaatgaaaacgtgtcagtttgtcactttcacgggGTTGGAGTactaacatgttcaactacttaagacattggctcaaATCTAGGTTGTCTTTAAAATGtgagaaaattaacaactaagAACAAATGTTTCACTTGTCTCATTGACTTCACGAACTCTAAACCCCGGCCTGGTCTATTTGGTCTGTTTCACAAGCCTTCCCGGAAGTCTTGCGATGTTGTGCCTCTGAGTTTTGAAACTCTGTGGGACGGTTCGGCTCAACAGATGTGGTCTCATTAaagttttaaaattcaatatgaAAATGGCTTCCATAACGACCAAAGAGCTTTTTGATGCACAACTCCTGGAAGGTGACTTCATCACAGCTACTCACCACAATGCACAACGTTTGGAAGATAGAGTTTCCCAACAAAAGACAGAGTTTCTCAGAAATGCAGAGAAACTCAGAAAACAGATTGAGAAACTTGAGAAAGAGAAGATGTTGAATACACAAAACAGGAAGAATGGTCTTTCAGATGGATTTAGAGTATTGGAAGAGTTTGATAAAGGTCTTCAGGATGATCGAAATACTGAGCAAATGAACGTGCAAAAGCATCTGATGAAAATCCATAATGGTGTAAATAAATTTCAGATGCAGCTGACTGACGTGAAGCCTACCCCTGAGTTAATTGAGAAACTGAAAGACATAATGACAGAAGTTGAAAATTCAATCAACACTTTCAAGGGGGATCAACGTCAAAGttTTGAGGATCTATTGAAAGAGGAAAGAACATGCAGCCAGGAGATATGTGCTTTTGAAAAGAAGATTGAGACTTGGTCTTTGGCTGTAAAAGCAGACCCAAAGTTGCCCCCTGCTCCCCCAGGCAAGGTGTGTCTGGCCAAAGCCCTAGAGGAAGACCTCCCACCAGAGGTGACCGCACTAGAGAGGTTCCTGCAGCAAACTGGAGGGAAGCAGGGGGGCTGGGACCAGTATGACCATCAGAGCTTTCTGAAAGTGTGGACCAAGCACAATGGCAAACCAGCCTATAGGAAAGAGGCTTTGCTCTACCTGCCAGGCAGAACCCCAGACAATGTTGAACAGCATGAAGATTGGTATCTTGAGCTCCTGTACCTccaggagaagaagaaagagGCCATTTACCGGTGGAAGGTtgagagacagcaggagagggcTGCAAGGCTGCAGCACCAGGATGAGCTGGAGAACGTTgccaggagggagagggaggcgcAGGCTGAGACCCAGCAGCGTagggctgaggaggagaggagggaggcggTGGCTCGCCTGGAAGGGTGGAAAAGGCAGCGCAGGCTGCgcctggagcaggaggaggagcagaggctCACTGGGGAGATCCTGCAGCGTAGACAAGCCAAGGAGGAGCGCAGGAGACAGCTGGAGGTGAAGCTGGTTCTGGAGGCCCACATTCGgcagaagaaggaggaggaagaacttCTGACCATGCAGAAGGAGGAACAGGAACAGGCTGACATGGAGGAGAAGAAAAGACTGGCAGGCTACTGCATCAAACGCTTTCAGGAAAGGGACTTCCAGAAGTTGGAGACAAAAGTGCAGGAGAAACAGGAGAAGGAAAAGCAGGAGCTGGATAGACAAAAGAGACTGGCTAAGCTGAAGGAGAAGGCAGAGGCTCATATCAGCAGAGACCCTTCCAGGCTTTGCAAACCCACCAAAGGATGGGAGGAACGCACCAAAGAGATTGGACCCACTGGGGGCGGACCTGTATTACAGATGTTTCATAGGGCTGTCCCAAGCTGGAGACAAGGCTTATGAGGATGTCTGACTGGAACCAATATTTTCTATGCTAATTTGATTTTTATTTAATCATGCAAAATTCAATCCTCAGTGTGGTTATTTGTCATTTCAACACACTTGTATCTGTGCTTTGTGTCATTTCCACTTTTAAACAATACATTATCACATTTCTTATCTGAATTAAAACATGAATATCTGTCGGCCTA
>XM_036979392.1
GCTGGCTGGAGTTACATGGAACTCCAGCAGCAGTGGTCAGCTGTCAGAAGGTTTTACTatgcctgctgtgtgtgtgtttgtaaccaATCTGTTATCCACCAGAAGGCAGTTGAAAACAAGCTGCACCCAGAAGAGTCAATTACATGGATACACACAAACCAGTCATCGGAAGGTGACTTCATCACAGCTACTCACCACAATGCACAACGTTTGGAAGATAGAGTTTCCCAACAAAAGACAGAGTTTCTCAGAAATGCAGAGAAACTCAGAAAACAGATTGAGAAACTTGAGAAAGAGAAGATGTTGAATACACAAAACAGGAAGAATGGTCTTTCAGATGGATTTAGAGTATTGGAAGAGTTTGATAAAGGTCTTCAGGATGATCGAAATACTGAGCAAATGAACGTGCAAAAGCATCTGATGAAAATCCATAATGGTGTAAATAAATTTCAGATGCAGCTGACTGACGTGAAGCCTACCCCTGAGTTAATTGAGAAACTGAAAGACATAATGACAGAAGTTGAAAATTCAATCAACACTTTCAAGGGGGATCAACGTCAAAGttTTGAGGATCTATTGAAAGAGGAAAGAACATGCAGCCAGGAGATATGTGCTTTTGAAAAGAAGATTGAGACTTGGTCTTTGGCTGTAAAAGCAGACCCAAAGTTGCCCCCTGCTCCCCCAGGCAAGGTGTGTCTGGCCAAAGCCCTAGAGGAAGACCTCCCACCAGAGGTGACCGCACTAGAGAGGTTCCTGCAGCAAACTGGAGGGAAGCAGGGGGGCTGGGACCAGTATGACCATCAGAGCTTTCTGAAAGTGTGGACCAAGCACAATGGCAAACCAGCCTATAGGAAAGAGGCTTTGCTCTACCTGCCAGGCAGAACCCCAGACAATGTTGAACAGCATGAAGATTGGTATCTTGAGCTCCTGTACCTccaggagaagaagaaagagGCCATTTACCGGTGGAAGGTtgagagacagcaggagagggcTGCAAGGCTGCAGCACCAGGATGAGCTGGAGAACGTTgccaggagggagagggaggcgcAGGCTGAGACCCAGCAGCGTagggctgaggaggagaggagggaggcggTGGCTCGCCTGGAAGGGTGGAAAAGGCAGCGCAGGCTGCgcctggagcaggaggaggagcagaggctCACTGGGGAGATCCTGCAGCGTAGACAAGCCAAGGAGGAGCGCAGGAGACAGCTGGAGGTGAAGCTGGTTCTGGAGGCCCACATTCGgcagaagaaggaggaggaagaacttCTGACCATGCAGAAGGAGGAACAGGAACAGGCTGACATGGAGGAGAAGAAAAGACTGGCAGGCTACTGCATCAAACGCTTTCAGGAAAGGGACTTCCAGAAGTTGGAGACAAAAGTGCAGGAGAAACAGGAGAAGGAAAAGCAGGAGCTGGATAGACAAAAGAGACTGGCTAAGCTGAAGGAGAAGGCAGAGGCTCATATCAGCAGAGACCCTTCCAGGCTTTGCAAACCCACCAAAGGATGGGAGGAACGCACCAAAGAGATTGGACCCACTGGGGGCGGACCTGTATTACAGATGTTTCATAGGGCTGTCCCAAGCTGGAGACAAGGCTTATGAGGATGTCTGACTGGAACCAATATTTTCTATGCTAATTTGATTTTTATTTAATCATGCAAAATTCAATCCTCAGTGTGGTTATTTGTCATTTCAACACACTTGTATCTGTGCTTTGTGTCATTTCCACTTTTAAACAATACATTATCACATTTCTTATCTGAATTAAAACATGAATATCTGTCGGCCTA
>XM_021605239.2
GACTGCCTCCAGGCCTCAGGAAGGTGACTTCATCACAGCTACTCACCACAATGCACAACGTTTGGAAGATAGAGTTTCCCAACAAAAGACAGAGTTTCTCAGAAATGCAGAGAAACTCAGAAAACAGATTGAGAAACTTGAGAAAGAGAAGATGTTGAATACACAAAACAGGAAGAATGGTCTTTCAGATGGATTTAGAGTATTGGAAGAGTTTGATAAAGGTCTTCAGGATGATCGAAATACTGAGCAAATGAACGTGCAAAAGCATCTGATGAAAATCCATAATGGTGTAAATAAATTTCAGATGCAGCTGACTGACGTGAAGCCTACCCCTGAGTTAATTGAGAAACTGAAAGACATAATGACAGAAGTTGAAAATTCAATCAACACTTTCAAGGGGGATCAACGTCAAAGttTTGAGGATCTATTGAAAGAGGAAAGAACATGCAGCCAGGAGATATGTGCTTTTGAAAAGAAGATTGAGACTTGGTCTTTGGCTGTAAAAGCAGACCCAAAGTTGCCCCCTGCTCCCCCAGGCAAGGTGTGTCTGGCCAAAGCCCTAGAGGAAGACCTCCCACCAGAGGTGACCGCACTAGAGAGGTTCCTGCAGCAAACTGGAGGGAAGCAGGGGGGCTGGGACCAGTATGACCATCAGAGCTTTCTGAAAGTGTGGACCAAGCACAATGGCAAACCAGCCTATAGGAAAGAGGCTTTGCTCTACCTGCCAGGCAGAACCCCAGACAATGTTGAACAGCATGAAGATTGGTATCTTGAGCTCCTGTACCTccaggagaagaagaaagagGCCATTTACCGGTGGAAGGTtgagagacagcaggagagggcTGCAAGGCTGCAGCACCAGGATGAGCTGGAGAACGTTgccaggagggagagggaggcgcAGGCTGAGACCCAGCAGCGTagggctgaggaggagaggagggaggcggTGGCTCGCCTGGAAGGGTGGAAAAGGCAGCGCAGGCTGCgcctggagcaggaggaggagcagaggctCACTGGGGAGATCCTGCAGCGTAGACAAGCCAAGGAGGAGCGCAGGAGACAGCTGGAGGTGAAGCTGGTTCTGGAGGCCCACATTCGgcagaagaaggaggaggaagaacttCTGACCATGCAGAAGGAGGAACAGGAACAGGCTGACATGGAGGAGAAGAAAAGACTGGCAGGCTACTGCATCAAACGCTTTCAGGAAAGGGACTTCCAGAAGTTGGAGACAAAAGTGCAGGAGAAACAGGAGAAGGAAAAGCAGGAGCTGGATAGACAAAAGAGACTGGCTAAGCTGAAGGAGAAGGCAGAGGCTCATATCAGCAGAGACCCTTCCAGGCTTTGCAAACCCACCAAAGGATGGGAGGAACGCACCAAAGAGATTGGACCCACTGGGGGCGGACCTGTATTACAGATGTTTCATAGGGCTGTCCCAAGCTGGAGACAAGGCTTATGAGGATGTCTGACTGGAACCAATATTTTCTATGCTAATTTGATTTTTATTTAATCATGCAAAATTCAATCCTCAGTGTGGTTATTTGTCATTTCAACACACTTGTATCTGTGCTTTGTGTCATTTCCACTTTTAAACAATACATTATCACATTTCTTATCTGAATTAAAACATGAATATCTGTCGGCCTA

Function

symbol description
ccdc112 Orthologous to human CCDC112 (coiled-coil domain containing 112).

NR:

description
coiled-coil domain-containing protein 112 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605240.2 False 1760 mRNA 0.47 10 11445115 11449587
XM_021605238.2 False 2004 mRNA 0.46 10 11445115 11450002
XM_036979392.1 False 1805 mRNA 0.48 10 11445115 11452227
XM_021605239.2 True 1656 mRNA 0.48 10 11445115 11460217
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Neighbor

gene id symbol gene type direction distance location
pggt1b pggt1b coding downstream 4805 11419779 ~ 11440310 (-)
LOC110525254 trim36 coding downstream 26406 11391940 ~ 11418709 (-)
LOC110525252 ccser1 coding downstream 54440 11280815 ~ 11390675 (-)
LOC118964797 NA coding downstream 165189 11277184 ~ 11279926 (-)
LOC110525094 grid2 coding downstream 203923 10587304 ~ 11241192 (-)
LOC110525257 fem1c coding upstream 3307 11463524 ~ 11469570 (-)
LOC110525259 LOC106585845 coding upstream 10523 11470740 ~ 11473134 (-)
LOC110525260 cdo1 coding upstream 62075 11522292 ~ 11537417 (-)
LOC110525095 LOC106585847 coding upstream 168799 11629016 ~ 11721345 (-)
hsd17b4 hsd17b4 coding upstream 348656 11808873 ~ 11822610 (-)
G473607 NA non-coding downstream 129040 11315874 ~ 11316075 (-)
G473601 NA non-coding downstream 139403 11305483 ~ 11305712 (-)
G473599 NA non-coding downstream 142155 11302717 ~ 11302960 (-)
G473596 NA non-coding downstream 145892 11298991 ~ 11299223 (-)
G473595 NA non-coding downstream 146314 11298451 ~ 11298801 (-)
G473710 NA non-coding upstream 18141 11478358 ~ 11478606 (-)
G473711 NA non-coding upstream 18609 11478826 ~ 11479162 (-)
G473715 NA non-coding upstream 20011 11480228 ~ 11480429 (-)
G473721 NA non-coding upstream 22755 11482972 ~ 11483183 (-)
G473723 NA non-coding upstream 25220 11485437 ~ 11485646 (-)
G472576 mpeg1 other downstream 965269 10476409 ~ 10479846 (-)
G472539 NA other downstream 1069038 10373852 ~ 10376077 (-)
G470834 NA other downstream 3146694 8296569 ~ 8298421 (-)
G469751 NA other downstream 3790497 7652639 ~ 7654618 (-)
G473930 NA other upstream 141298 11601515 ~ 11601997 (-)
G474030 NA other upstream 281985 11742202 ~ 11742758 (-)
LOC110525267 LOC106585853 other upstream 495049 11955217 ~ 11979397 (-)
G474614 NA other upstream 568942 12029159 ~ 12029610 (-)
LOC110525279 LOC106585809 other upstream 964244 12310179 ~ 12555360 (-)

Expression

LOC110525258(ccdc112) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110525258(ccdc112) Expression in each Bioproject

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LOC110525258(ccdc112) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network