Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525260 |
| gene name | cdo1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 11522292 ~ 11537417 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cdo1 | Predicted to enable cysteine dioxygenase activity and ferrous iron binding activity. Predicted to be involved in L-cysteine catabolic process. Is expressed in gut; intestinal bulb; lens; liver; and yolk syncytial layer. Orthologous to human CDO1 (cysteine dioxygenase type 1). |
| id | name | namespace |
|---|---|---|
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0046439 | L-cysteine metabolic process | biological_process |
| GO:0005506 | iron ion binding | molecular_function |
| GO:0017172 | cysteine dioxygenase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021605242.2 | False | 1660 | mRNA | 0.39 | 5 | 11522292 | 11528072 |
| TU538726 | True | 425 | lncRNA | 0.33 | 2 | 11522293 | 11537417 |
11,506,000
11,508,000
11,510,000
11,512,000
11,514,000
11,516,000
11,518,000
11,520,000
11,522,000
11,524,000
11,526,000
11,528,000
11,530,000
11,532,000
11,534,000
11,536,000
11,538,000
11,540,000
NC_048570.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525259 | LOC106585845 | coding | downstream | 49158 | 11470740 ~ 11473134 (-) |
| LOC110525257 | fem1c | coding | downstream | 52722 | 11463524 ~ 11469570 (-) |
| LOC110525258 | ccdc112 | coding | downstream | 62075 | 11445115 ~ 11460217 (-) |
| pggt1b | pggt1b | coding | downstream | 81982 | 11419779 ~ 11440310 (-) |
| LOC110525254 | trim36 | coding | downstream | 103583 | 11391940 ~ 11418709 (-) |
| LOC110525095 | LOC106585847 | coding | upstream | 100944 | 11629016 ~ 11721345 (-) |
| hsd17b4 | hsd17b4 | coding | upstream | 280801 | 11808873 ~ 11822610 (-) |
| LOC110525267 | LOC106585853 | coding | upstream | 427145 | 11955217 ~ 11979397 (-) |
| LOC110525269 | tle1 | coding | upstream | 512455 | 12040527 ~ 12063287 (-) |
| rasef | rasef | coding | upstream | 575183 | 12103255 ~ 12139444 (-) |
| G473741 | NA | non-coding | downstream | 9915 | 11511522 ~ 11512377 (-) |
| G473735 | NA | non-coding | downstream | 16000 | 11506007 ~ 11506292 (-) |
| G473728 | NA | non-coding | downstream | 33473 | 11488519 ~ 11488819 (-) |
| G473723 | NA | non-coding | downstream | 36646 | 11485437 ~ 11485646 (-) |
| G473721 | NA | non-coding | downstream | 39109 | 11482972 ~ 11483183 (-) |
| G473936 | NA | non-coding | upstream | 84346 | 11612418 ~ 11612851 (-) |
| G473944 | NA | non-coding | upstream | 98922 | 11626994 ~ 11627212 (-) |
| G473957 | NA | non-coding | upstream | 138472 | 11666544 ~ 11667045 (-) |
| G473976 | NA | non-coding | upstream | 165808 | 11693880 ~ 11694190 (-) |
| G474032 | NA | non-coding | upstream | 216265 | 11744337 ~ 11744549 (-) |
| LOC110525252 | ccser1 | other | downstream | 137846 | 11280815 ~ 11390675 (-) |
| G472576 | mpeg1 | other | downstream | 1042446 | 10476409 ~ 10479846 (-) |
| G472539 | NA | other | downstream | 1146215 | 10373852 ~ 10376077 (-) |
| G470834 | NA | other | downstream | 3223871 | 8296569 ~ 8298421 (-) |
| G469751 | NA | other | downstream | 3867674 | 7652639 ~ 7654618 (-) |
| G473930 | NA | other | upstream | 73443 | 11601515 ~ 11601997 (-) |
| G474030 | NA | other | upstream | 214130 | 11742202 ~ 11742758 (-) |
| G474614 | NA | other | upstream | 501087 | 12029159 ~ 12029610 (-) |
| LOC110525279 | LOC106585809 | other | upstream | 896389 | 12310179 ~ 12555360 (-) |
