Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525261 |
| gene name | ap3s1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 11538277 ~ 11561607 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ap3s1 | Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be part of membrane coat. Orthologous to human AP3S1 (adaptor related protein complex 3 subunit sigma 1). |
| description |
|---|
| PREDICTED: AP-3 complex subunit sigma-1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0016192 | vesicle-mediated transport | biological_process |
| GO:0030117 | membrane coat | cellular_component |
| GO:0008565 | obsolete protein transporter activity | molecular_function |
| id | description |
|---|---|
| K12399 | AP3S; AP-3 complex subunit sigma |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021605243.2 | True | 1421 | mRNA | 0.42 | 6 | 11538277 | 11561607 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525250 | hpgds | coding | upstream | 1029148 | 10497758 ~ 10509129 (+) |
| prf1.5 | LOC106585834 | coding | upstream | 1053942 | 10480130 ~ 10484335 (+) |
| mpeg1.1 | mpeg1 | coding | upstream | 1059057 | 10476333 ~ 10479220 (+) |
| LOC110525245 | LOC106585833 | coding | upstream | 1077632 | 10459637 ~ 10460645 (+) |
| aptx | LOC100136186 | coding | upstream | 1151932 | 10384908 ~ 10386345 (+) |
| commd10 | comda | coding | downstream | 860 | 11562467 ~ 11604688 (+) |
| LOC118965115 | NA | coding | downstream | 183062 | 11744669 ~ 11744803 (+) |
| LOC110525262 | dmxl1 | coding | downstream | 184406 | 11746013 ~ 11809089 (+) |
| LOC110525265 | LOC106585816 | coding | downstream | 262752 | 11824359 ~ 11837872 (+) |
| pheta1 | LOC106585851 | coding | downstream | 292289 | 11853896 ~ 11857562 (+) |
| G473744 | NA | non-coding | upstream | 19002 | 11519044 ~ 11519275 (+) |
| G473739 | NA | non-coding | upstream | 27240 | 11510697 ~ 11511037 (+) |
| G473709 | NA | non-coding | upstream | 59734 | 11478326 ~ 11478543 (+) |
| G473702 | NA | non-coding | upstream | 62912 | 11470742 ~ 11475365 (+) |
| G473177 | NA | non-coding | upstream | 77336 | 11460645 ~ 11460941 (+) |
| G473783 | NA | non-coding | downstream | 34745 | 11596352 ~ 11596933 (+) |
| G473785 | NA | non-coding | downstream | 40045 | 11601652 ~ 11602038 (+) |
| G473789 | NA | non-coding | downstream | 45310 | 11606917 ~ 11607129 (+) |
| G473790 | NA | non-coding | downstream | 45964 | 11607571 ~ 11607815 (+) |
| G473791 | NA | non-coding | downstream | 46262 | 11607869 ~ 11608234 (+) |
| G473070 | NA | other | upstream | 259012 | 11278338 ~ 11279265 (+) |
| G472364 | NA | other | upstream | 1257154 | 10280306 ~ 10281123 (+) |
| LOC110525088 | LOC106585913 | other | upstream | 2264324 | 9228570 ~ 9273994 (+) |
| G470770 | NA | other | upstream | 2312764 | 9223351 ~ 9225513 (+) |
| G470599 | NA | other | upstream | 2727334 | 8809973 ~ 8810943 (+) |
| G474321 | NA | other | downstream | 626681 | 12188288 ~ 12190572 (+) |
| G474851 | NA | other | downstream | 942153 | 12503760 ~ 12504119 (+) |
| G474949 | NA | other | downstream | 1150699 | 12712306 ~ 12713298 (+) |
| G475692 | NA | other | downstream | 1752072 | 13313679 ~ 13313969 (+) |
| G476234 | NA | other | downstream | 2423233 | 13984840 ~ 13985259 (+) |
