LOC110525265 (LOC106585816)


Basic Information

Item Value
gene id LOC110525265
gene name LOC106585816
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 11824359 ~ 11837872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605247.2
ATTATTATCACTTGTCATTTATTCAGCAAAGTAACTGCAGTTTATGAATATATTATGCCTGTCGTATGTAACCTATAGaatatacatgtattttttaGAGACAATCGGTTCAATGGGGATGTCTGGCGCAGCCTATGGACCATTATGATTAGAATATTGGACTTGGATTGGATTGATGTGTACTATGTACCATGTTCCTTTTCATTCTCTTATTATTTCAGTCTGATTAAAATGACGGACCGAATATCTGACTAGGCATCTTGCCACAAGGAAATGTGACATATCAGCATTTGTATTTTTGACAGAAATGTTAAAAGGTAACGGCGGAATGATCACGAGCGACTGTCTAGAAACACCTCTTCAGCAACATTATTTTATTAAACATTTTTATGATAATATTGTTTTTGCTATGCTCTATTGCGCATGCGTGCTGGCCGGGACGCTGTCACCACGCTTCGCTACATTATTGCGTGATTTAGCCTGTATGGGAGGAAAGTGAAGAAAACAGAACATTAAAATGCATAGGCAAAGTGGTCTGACGGCAGCGGAAGGATTTACTTGTAATCCTTAAAAATACGTTGTGCCAACGAAGAATGTCAGGGACATCAAATGTAGAATCTGCTGAAGGAGTAGTCTCCAAAGTTAAAGTCAAAAAGCAGATCAAGACTATCGTGAAGGATTTGGAGACCATACTGGGAGACTTGAGGGATGTAGCCAAGGAACTCAAAGAGGTTGTGCATGAGATCGACTCCCTCACGTGTGACCTAcagctggaggaggagatgaCAGACAGTTCAAAGACAGACACCCTGAACAGCAGCTCtagcagcaccaccaccaccaccacagcctcCAGCATCGACAAGATCAAGATCGCCATCTTTAGGCCCCCGTCTGTCAGCCACGCCATCCTGACCGTGATGAAGAAGCCCCACCCTCCGCTGCCCCCTCCCAGGCTGACACCTATCAAAGCAGAGGAGCACAACAAGAACCCACTATCAGGGAGCCTACTAGCCAAGGCTAACGGGACTCTTATGcgtaatggtgttttcccagggaAGCCAAACAGAGACTTATCGTGTTGCATCTCTAATAGtacaaaggaagagagaggacttATGCCTATGCCTTTGCTACGGCATGAAAAGACCAAATGCCCCCAGGCAACCCGGGAGAGGGTCCGATTCAGTGAAAAGGTCCAGTATCACGGGTACTGCCCTGACTGTGACCTGCAATATGACGTTGACAACACAGATATGCACTTACAGACAGAATTTACTGATGACATGAGCCCTGTCCATCAgtgttcctcctcctcaccaccatCCCAGCTCATGTTAGAAAATGGCGGTCTAAGTGTCAGCCATAGTTTCCCTCCTACAAAACTGCCTTGTGTGCCTCATTCTAACCCTTCCCTGAAACCACAGAAAACCATCCTTCGAAAATCAACCACCACAACGGTTTGATGTTAATCACCCTTAAtttaaatatttctaaataatTTATAGTGTTTTCTATTTCATGAGCACTTTCTACTCCAGTCAAACGTGGATTATCTAAACGATGAGGAAAAAAGAGCGCTAGAAGACGTGGCCATGAGCTCAGAAATGCACAAGGAGAGAATGAACGGTGAGGTCCTTCTGGGTAAAAGTCGAAACAGCCTTTACTGACATGAAACGGATCAATTTTGGTTCATCATACAGTCACTGAGAACGAGGCTCCCTACCTTTGACAGAACACCAATTCCTCTGAGCCAAGGCCAAATAATTAATCCTCATAGAGAATTGGAAGACATAGTAGCACAGTTTTATTCATGGGAGAAGCATGGTAAAAGTTAAAAATGTAATGCAAACATAAGATGAAAACATTGCATCCAAATGTGACTGGTTCATTTACAATTGAAATGGAGATTCTATGTATAATTTATAGGCAGTGGAATTACTGATGTCCCCAGCATTCTGAGAACTCTTCAAGGGTGGGAAGTCTGCTTATAGCAGACATTCCTATTGaacgtgagaaagagagaaacataaCCATGGTCATGTTACTTTCTTATGACATCATTTGAACAAGAACAGACACACTCAGTTCATAATTGTATGTGTTGGTTACAGGTTCTTGTGAATTGTGGGGTATTAGACATAAACAGCCAGTAAAATCTGCTGGACAAGATTTGTTGATCTGCAGTGACTGCTCTTAATATACAGGAACATGAAATACATACATGTGTCATATTGAAAATCCAACATACAATATGAGGCAAGTTAAAAGGCTAAAATATAGGAATTGAGGATGTTCACTAATTTGTGTTCGGAATGCTATGTTGAGCGTATAGAAATCTATGTGTGATCAATGTCATACAAGTTGCTTGCAAAGATATGGCATGCACTTAAAGCAAGAATAACTTgcattacattttatttgtatatatttatatatttataaaacCTTTCTACAGAGATTGTAACATTTAAAAAGaggatattttttttattccGTGGGATGAAAGGCGTGTTTTAAAGAAGGCTGTCATTCTTCTGACAGTACATGCGTTTCTGCAGGGCATATCTggataatttatttatatagtgagagagtatatatatatatatatatatatatatatatatataaaaacacattATTGTTATGGTATAGGGGCGGAAAAAATTGTGTAAAATGTGAAAGCAAACTAGATTAAACCAAATACATTGTTGTGCTTATCAGAGGAGGAATGATACTGAATGAATGCATGACTGATTCTTTTTCCACTTCCTCCTGTCATCGCTGTGGTCTGCTATGCATTTCCTGGAGCGGCTGTTAGGATCCAACAACTGGAGTGCACCTCACTTCGGCCCACCCATAGTCGATGCGGACTTTGTGACTGTGTTCTctcgtaaaaaaaacaaacattgtcaACGACGTGTCGGGGAAACAATGTCCACATCTTTGGACATCATTTGCACTTTGCACTTATGTTAGTCTTTATACTTTGTTTTTCCTTTAACATGTTAATTACAAAATAACTTCAA
>XM_021605248.2
ATTATTATCACTTGTCATTTATTCAGCAAAGTAACTGCAGTTTATGAATATATTATGCCTGTCGTATGTAACCTATAGaatatacatgtattttttaGAGACAATCGGTTCAATGGGGATGTCTGGCGCAGCCTATGGACCATTATGATTAGAATATTGGACTTGGATTGGATTGATGTGTACTATGTACCATGTTCCTTTTCATTCTCTTATTATTTCAGTCTGATTAAAATGACGGACCGAATATCTGACTAGGCATCTTGCCACAAGGAAATGTGACATATCAGCATTTGTATTTTTGACAGAAATGTTAAAAGGTAACGGCGGAATGATCACGAGCGACTGTCTAGAAACACCTCTTCAGCAACATTATTTTATTAAACATTTTTATGATAATATTGTTTTTGCTATGCTCTATTGCGCATGCGTGCTGGCCGGGACGCTGTCACCACGCTTCGCTACATTATTGCGTGATTTAGCCTGTATGGGAGGAAAGTGAAGAAAACAGAACATTAAAATGCATAGGCAAAGTGGTCTGACGGCAGCGGAAGGATTTACTTGTAATCCTTAAAAATACGTTGTGCCAACGAAGAATGTCAGGGACATCAAATGTAGAATCTGCTGAAGGAGTAGTCTCCAAAGTTAAAGTCAAAAAGCAGATCAAGACTATCGTGAAGGATTTGGAGACCATACTGGGAGACTTGAGGGATGTAGCCAAGGAACTCAAAGAGGTTGTGCATGAGATCGACTCCCTCACGTGTGACCTAcagctggaggaggagatgaCAGACAGTTCAAAGACAGACACCCTGAACAGCAGCTCtagcagcaccaccaccaccaccacagcctcCAGCATCGACAAGATCAAGATCGCCATCTTTAGGCCCCCGTCTGTCAGCCACGCCATCCTGACCGTGATGAAGAAGCCCCACCCTCCGCTGCCCCCTCCCAGGCTGACACCTATCAAAGCAGAGGAGCACAACAAGAACCCACTATCAGGGAGCCTACTAGCCAAGGCTAACGGGACTCTTATGcgtaatggtgttttcccagggaAGCCAAACAGAGACTTATCGTGTTGCATCTCTAATAGtacaaaggaagagagaggacttATGCCTATGCCTTTGCTACGGCATGAAAAGACCAAATGCCCCCAGGCAACCCGGGAGAGGGTCCGATTCAGTGAAAAGGTCCAGTATCACGGGTACTGCCCTGACTGTGACCTGCAATATGACGTTGACAACACAGATATGCACTTACAGACAGAATTTACTGATGACATGAGCCCTGTCCATCAgtgttcctcctcctcaccaccatCCCAGCTCATGTTAGAAAATGGCGGTCTAAGTGTCAGCCATAGTTTCCCTCCTACAAAACTGCCTTGTGTGCCTCATTCTAACCCTTCCCTGAAACCACAGAAAACCATCCTTCGAAAATCAACCACCACAACGGTTTGATGTTAATCACCCTTAAtttaaatatttctaaataatTTATAGTGTTTTCTATTTCATGAGCACTTTCTACTCCAGTCAAACGTGGATTATCTAAACGATGAGGAAAAAAGAGCGCTAGAAGACGTGGCCATGAGCTCAGAAATGCACAAGGAGAGAATGAACGGTCCTTCTGGGTAAAAGTCGAAACAGCCTTTACTGACATGAAACGGATCAATTTTGGTTCATCATACAGTCACTGAGAACGAGGCTCCCTACCTTTGACAGAACACCAATTCCTCTGAGCCAAGGCCAAATAATTAATCCTCATAGAGAATTGGAAGACATAGTAGCACAGTTTTATTCATGGGAGAAGCATGGTAAAAGTTAAAAATGTAATGCAAACATAAGATGAAAACATTGCATCCAAATGTGACTGGTTCATTTACAATTGAAATGGAGATTCTATGTATAATTTATAGGCAGTGGAATTACTGATGTCCCCAGCATTCTGAGAACTCTTCAAGGGTGGGAAGTCTGCTTATAGCAGACATTCCTATTGaacgtgagaaagagagaaacataaCCATGGTCATGTTACTTTCTTATGACATCATTTGAACAAGAACAGACACACTCAGTTCATAATTGTATGTGTTGGTTACAGGTTCTTGTGAATTGTGGGGTATTAGACATAAACAGCCAGTAAAATCTGCTGGACAAGATTTGTTGATCTGCAGTGACTGCTCTTAATATACAGGAACATGAAATACATACATGTGTCATATTGAAAATCCAACATACAATATGAGGCAAGTTAAAAGGCTAAAATATAGGAATTGAGGATGTTCACTAATTTGTGTTCGGAATGCTATGTTGAGCGTATAGAAATCTATGTGTGATCAATGTCATACAAGTTGCTTGCAAAGATATGGCATGCACTTAAAGCAAGAATAACTTgcattacattttatttgtatatatttatatatttataaaacCTTTCTACAGAGATTGTAACATTTAAAAAGaggatattttttttattccGTGGGATGAAAGGCGTGTTTTAAAGAAGGCTGTCATTCTTCTGACAGTACATGCGTTTCTGCAGGGCATATCTggataatttatttatatagtgagagagtatatatatatatatatatatatatatatatatataaaaacacattATTGTTATGGTATAGGGGCGGAAAAAATTGTGTAAAATGTGAAAGCAAACTAGATTAAACCAAATACATTGTTGTGCTTATCAGAGGAGGAATGATACTGAATGAATGCATGACTGATTCTTTTTCCACTTCCTCCTGTCATCGCTGTGGTCTGCTATGCATTTCCTGGAGCGGCTGTTAGGATCCAACAACTGGAGTGCACCTCACTTCGGCCCACCCATAGTCGATGCGGACTTTGTGACTGTGTTCTctcgtaaaaaaaacaaacattgtcaACGACGTGTCGGGGAAACAATGTCCACATCTTTGGACATCATTTGCACTTTGCACTTATGTTAGTCTTTATACTTTGTTTTTCCTTTAACATGTTAATTACAAAATAACTTCAA

Function

NR:

description
protein Largen

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605247.2 False 3032 mRNA 0.40 3 11824359 11837872
XM_021605248.2 True 3027 mRNA 0.40 3 11824359 11837872

Neighbor

gene id symbol gene type direction distance location
LOC110525262 dmxl1 coding upstream 15270 11746013 ~ 11809089 (+)
LOC118965115 NA coding upstream 79556 11744669 ~ 11744803 (+)
commd10 comda coding upstream 219671 11562467 ~ 11604688 (+)
LOC110525261 ap3s1 coding upstream 262752 11538277 ~ 11561607 (+)
LOC110525250 hpgds coding upstream 1315230 10497758 ~ 10509129 (+)
pheta1 LOC106585851 coding downstream 16024 11853896 ~ 11857562 (+)
sh2b3 LOC106585852 coding downstream 51065 11888937 ~ 11950017 (+)
LOC110525268 mapkapk5 coding downstream 150490 11988362 ~ 12010362 (+)
LOC110525274 idnk coding downstream 406509 12244381 ~ 12247297 (+)
LOC110525277 LOC106585857 coding downstream 434689 12236437 ~ 12283249 (+)
G474038 NA non-coding upstream 23967 11799914 ~ 11800392 (+)
G473858 NA non-coding upstream 130036 11694060 ~ 11694323 (+)
G473819 NA non-coding upstream 178213 11645891 ~ 11646146 (+)
G473806 NA non-coding upstream 201006 11623116 ~ 11623353 (+)
G473801 NA non-coding upstream 206117 11617512 ~ 11618242 (+)
G474142 NA non-coding downstream 3902 11841774 ~ 11842085 (+)
G474143 NA non-coding downstream 5037 11842909 ~ 11843237 (+)
G474185 NA non-coding downstream 42718 11880590 ~ 11880841 (+)
G474189 NA non-coding downstream 46362 11884234 ~ 11884593 (+)
G474193 NA non-coding downstream 54292 11892164 ~ 11892377 (+)
G473070 NA other upstream 545094 11278338 ~ 11279265 (+)
G472364 NA other upstream 1543236 10280306 ~ 10281123 (+)
LOC110525088 LOC106585913 other upstream 2550406 9228570 ~ 9273994 (+)
G470770 NA other upstream 2598846 9223351 ~ 9225513 (+)
G470599 NA other upstream 3013416 8809973 ~ 8810943 (+)
G474321 NA other downstream 350416 12188288 ~ 12190572 (+)
G474851 NA other downstream 665888 12503760 ~ 12504119 (+)
G474949 NA other downstream 874434 12712306 ~ 12713298 (+)
G475692 NA other downstream 1475807 13313679 ~ 13313969 (+)
G476234 NA other downstream 2146968 13984840 ~ 13985259 (+)

Expression


Co-expression Network