Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525267 |
| gene name | LOC106585853 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 11955217 ~ 11979397 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ataxin-2-like isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021605258.2 | False | 3989 | mRNA | 0.56 | 25 | 11955217 | 11977893 |
| XM_021605261.2 | False | 4216 | mRNA | 0.55 | 23 | 11955217 | 11979389 |
| XM_021605256.2 | False | 4285 | mRNA | 0.55 | 24 | 11955217 | 11979392 |
| XM_021605257.2 | False | 4253 | mRNA | 0.55 | 25 | 11955217 | 11979393 |
| XM_021605254.2 | False | 4296 | mRNA | 0.55 | 24 | 11955217 | 11979394 |
| XM_021605253.2 | False | 4306 | mRNA | 0.55 | 25 | 11955217 | 11979395 |
| XM_021605255.2 | False | 4294 | mRNA | 0.55 | 24 | 11955217 | 11979395 |
| XM_021605259.2 | False | 4121 | mRNA | 0.54 | 24 | 11955217 | 11979396 |
| XM_021605252.2 | False | 4314 | mRNA | 0.54 | 25 | 11955217 | 11979397 |
| TU539498 | True | 825 | TUCP | 0.48 | 3 | 11955266 | 11956537 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hsd17b4 | hsd17b4 | coding | downstream | 132607 | 11808873 ~ 11822610 (-) |
| LOC110525095 | LOC106585847 | coding | downstream | 233872 | 11629016 ~ 11721345 (-) |
| LOC110525260 | cdo1 | coding | downstream | 427145 | 11522292 ~ 11537417 (-) |
| LOC110525259 | LOC106585845 | coding | downstream | 482083 | 11470740 ~ 11473134 (-) |
| LOC110525257 | fem1c | coding | downstream | 485647 | 11463524 ~ 11469570 (-) |
| LOC110525269 | tle1 | coding | upstream | 61130 | 12040527 ~ 12063287 (-) |
| rasef | rasef | coding | upstream | 123858 | 12103255 ~ 12139444 (-) |
| LOC110525271 | LOC106585862 | coding | upstream | 160221 | 12139618 ~ 12157601 (-) |
| frmd3 | frmd3 | coding | upstream | 185170 | 12164567 ~ 12244072 (-) |
| LOC110525275 | LOC106585859 | coding | upstream | 271084 | 12250481 ~ 12257863 (-) |
| G474535 | NA | non-coding | downstream | 5829 | 11949051 ~ 11949388 (-) |
| G474583 | NA | non-coding | downstream | 18670 | 11936283 ~ 11936547 (-) |
| G474577 | NA | non-coding | downstream | 26782 | 11928221 ~ 11928435 (-) |
| G474576 | NA | non-coding | downstream | 27594 | 11927384 ~ 11927623 (-) |
| G474571 | NA | non-coding | downstream | 38470 | 11916517 ~ 11916747 (-) |
| G474605 | NA | non-coding | upstream | 29405 | 12008802 ~ 12010106 (-) |
| G474609 | NA | non-coding | upstream | 40325 | 12019722 ~ 12019950 (-) |
| G474627 | NA | non-coding | upstream | 78645 | 12058042 ~ 12058479 (-) |
| G474641 | NA | non-coding | upstream | 117087 | 12096484 ~ 12096832 (-) |
| G474646 | NA | non-coding | upstream | 143225 | 12122622 ~ 12123474 (-) |
| G474030 | NA | other | downstream | 212459 | 11742202 ~ 11742758 (-) |
| G473930 | NA | other | downstream | 353220 | 11601515 ~ 11601997 (-) |
| LOC110525252 | ccser1 | other | downstream | 570771 | 11280815 ~ 11390675 (-) |
| G472576 | mpeg1 | other | downstream | 1475371 | 10476409 ~ 10479846 (-) |
| G472539 | NA | other | downstream | 1579140 | 10373852 ~ 10376077 (-) |
| G474614 | NA | other | upstream | 49762 | 12029159 ~ 12029610 (-) |
| LOC110525279 | LOC106585809 | other | upstream | 445064 | 12310179 ~ 12555360 (-) |
| G475413 | NA | other | upstream | 972855 | 12952252 ~ 12954051 (-) |
| LOC110525296 | arrdc3 | other | upstream | 1049988 | 13026299 ~ 13046348 (-) |
| G475573 | NA | other | upstream | 1217918 | 13197315 ~ 13198012 (-) |
