wdr54 (wdr54)


Basic Information

Item Value
gene id wdr54
gene name wdr54
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12878415 ~ 12882594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605301.2
GTTTCACGCAAAGGTGGAGCTGTCACTATGGCTGCAAAGGACGCGCAATGATTGAAAGATGTACCACAAAGAGAAGAGCATTCAGATGAAAAGCAGTGCGTCTGCGCTATACAACAACCTGAGCGTGCTGCGCATAGCCCCGCGGAGCCTGACCTATTTCACAGTGGTACACGCCAACATGGTCAATATGGTCAGTGCTTCTTGGGACGGACTCAACTACTCCCACCGCCAGCTGCAGTCCAAAGAGGCCAACGTAGCTACCAGCTCCTCCCTCATCATGCAGGCAGCCTGGTGTGTCCTTCCATCTCGTGACATCCTGGTGCTCACCTCTCAGAAAGGCATCCAGATGTATGAGTCAGATGGATCCATAATGGTATACTGGCATGCACTGGACACGCCTGAAACCCAAACAGCCCAGGCAGTGTTTGCTCGAGGGATTGCAGCAGTGCGGGAAAAATACATCTGTGTGGgcatCTCGTCTGGCTCTATGCTGGTGTTTGACGTCCCCATTAAAGGCAGTAACATCACCCTCTCAGAGGTGCTGGAGGAGCACAAGGAGTCCATCACGGATTTGGCCTCAGAATGTTCCGGTAGCCTGGAGTGCATTGCAGACATGGTGAGTGCTGACGACTCTGGCAATCTCTGTGTGTGGAAGTCAGGAGAGGACTTCCAGCTGCTCAACAAGATCCCTGGTTTCGATATGAGCTGCTCCTCAGTGAAGCTGTGGAAGGGAACCGTGGTGGCAGGCTATGGCACAGGGCAGATCCGTCTCTACGAGGCCGTGACAGGGATCGTCCACGCAGAGGTCAACGCCCACGCACGCTGGATCTACTCCTTGGACATCGCCCCCTTCTCTGGCCTGCTTCTTTCTGCTGCTGAGGACTCTCTGGTTAGAGTGTGGCATCTGACCATGACCCCAGAGACTAACAGTGTGGAGatcgTGCACATGTATAACGAGTGTGTGACAGACACCCAGATCTGCGGGGCTAAGTTCTGCGACGGGGACGGCTACGCCTTCGCTGTGACGGGCTACGACCTGAGTGAGATCATCCGCTACACACAGGTCTAACAGCAGTAGCACGCACCACGGgagatgtgtgtgagtgtgtgtgaggttgACATGTGAATGGAGTGTGTCAGCTCAGCAGTATCTCTGTTGGGGAGTGTGTGACAAAAGAGAAGCCTACAGCAGGAAACATCTGCCTGATAGACCATGCAGCATCTAATTCCACCAGATCAATGGTCTACAGAGAGACGGAAAGCCTATGAAGGTTAACTCAGAAGCAAATGAGGGCTGTGACCCCATCTCCATGTACTATGACCTAACTAGAGGacatgatacagtatatatgtctACAGCGTATCTCCCATGGATATTAACTTTGGTCCAGAGGTCAGATAGAAGAATGTTGTCTCTATCAAGTAGTTTCCTACATATCAATGCGCGACAGGAAAAGTGAGGCATCTTACAATATATGAGGAGAAAGATGATTTGTAGTGCGATGTGACCTTGTATATTTTGACTGATCACATACTATGCTGACACGTTTCCTCTGtgttgagtatgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgagTAACGGACCATGAAACTACACATGAGTGTGTATAAATCTGTTTTACAGATTTAAAATGAAGGGAGCAGGCTATCCTGTAACGACGTAGGGTTGCTGACAGCAGCACAAGTCCTCAGGTGTCTCAGTATATCATTGTTGCAAGTATTTACAGTGTGTATGGTAATGTAGGTCGTTCAGCATTCAGCTTGGAAATGTAACATTCCTTTGACTTAGTAAGTCATGAATATCATTATTGTACAGCATCACTGTATAAATGTACTGTAACTATGAATCAACTTGACAATAAATATTTATTGTAGATAACTGTC
>XM_021605300.2
GTGTACACAAAACGTATGACGTTTCACGCAAAGGTGGAGCTGTCACTATGGCTGCAAAGGACGCGCAATGAATTGTCGTCATTAAGTACACTATTTGCACTCTCCCTTTTTACCCAATTGAATTGATAAGATTGAAAGATGTACCACAAAGAGAAGAGCATTCAGATGAAAAGCAGTGCGTCTGCGCTATACAACAACCTGAGCGTGCTGCGCATAGCCCCGCGGAGCCTGACCTATTTCACAGTGGTACACGCCAACATGGTCAATATGGTCAGTGCTTCTTGGGACGGACTCAACTACTCCCACCGCCAGCTGCAGTCCAAAGAGGCCAACGTAGCTACCAGCTCCTCCCTCATCATGCAGGCAGCCTGGTGTGTCCTTCCATCTCGTGACATCCTGGTGCTCACCTCTCAGAAAGGCATCCAGATGTATGAGTCAGATGGATCCATAATGGTATACTGGCATGCACTGGACACGCCTGAAACCCAAACAGCCCAGGCAGTGTTTGCTCGAGGGATTGCAGCAGTGCGGGAAAAATACATCTGTGTGGgcatCTCGTCTGGCTCTATGCTGGTGTTTGACGTCCCCATTAAAGGCAGTAACATCACCCTCTCAGAGGTGCTGGAGGAGCACAAGGAGTCCATCACGGATTTGGCCTCAGAATGTTCCGGTAGCCTGGAGTGCATTGCAGACATGGTGAGTGCTGACGACTCTGGCAATCTCTGTGTGTGGAAGTCAGGAGAGGACTTCCAGCTGCTCAACAAGATCCCTGGTTTCGATATGAGCTGCTCCTCAGTGAAGCTGTGGAAGGGAACCGTGGTGGCAGGCTATGGCACAGGGCAGATCCGTCTCTACGAGGCCGTGACAGGGATCGTCCACGCAGAGGTCAACGCCCACGCACGCTGGATCTACTCCTTGGACATCGCCCCCTTCTCTGGCCTGCTTCTTTCTGCTGCTGAGGACTCTCTGGTTAGAGTGTGGCATCTGACCATGACCCCAGAGACTAACAGTGTGGAGatcgTGCACATGTATAACGAGTGTGTGACAGACACCCAGATCTGCGGGGCTAAGTTCTGCGACGGGGACGGCTACGCCTTCGCTGTGACGGGCTACGACCTGAGTGAGATCATCCGCTACACACAGGTCTAACAGCAGTAGCACGCACCACGGgagatgtgtgtgagtgtgtgtgaggttgACATGTGAATGGAGTGTGTCAGCTCAGCAGTATCTCTGTTGGGGAGTGTGTGACAAAAGAGAAGCCTACAGCAGGAAACATCTGCCTGATAGACCATGCAGCATCTAATTCCACCAGATCAATGGTCTACAGAGAGACGGAAAGCCTATGAAGGTTAACTCAGAAGCAAATGAGGGCTGTGACCCCATCTCCATGTACTATGACCTAACTAGAGGacatgatacagtatatatgtctACAGCGTATCTCCCATGGATATTAACTTTGGTCCAGAGGTCAGATAGAAGAATGTTGTCTCTATCAAGTAGTTTCCTACATATCAATGCGCGACAGGAAAAGTGAGGCATCTTACAATATATGAGGAGAAAGATGATTTGTAGTGCGATGTGACCTTGTATATTTTGACTGATCACATACTATGCTGACACGTTTCCTCTGtgttgagtatgtgtgtgtgtgtgtgtgtgtgcgcgtgtgcgagTAACGGACCATGAAACTACACATGAGTGTGTATAAATCTGTTTTACAGATTTAAAATGAAGGGAGCAGGCTATCCTGTAACGACGTAGGGTTGCTGACAGCAGCACAAGTCCTCAGGTGTCTCAGTATATCATTGTTGCAAGTATTTACAGTGTGTATGGTAATGTAGGTCGTTCAGCATTCAGCTTGGAAATGTAACATTCCTTTGACTTAGTAAGTCATGAATATCATTATTGTACAGCATCACTGTATAAATGTACTGTAACTATGAATCAACTTGACAATAAATATTTATTGTAGATAACTGTC

Function

symbol description
wdr54 Orthologous to human WDR54 (WD repeat domain 54).

NR:

description
PREDICTED: WD repeat-containing protein 54

GO: NA

KEGG:

id description
K24749 WDR54; WD repeat-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605301.2 False 1907 mRNA 0.49 10 12878415 12882574
XM_021605300.2 True 1987 mRNA 0.48 10 12878415 12882594
Loading

Neighbor

gene id symbol gene type direction distance location
rhobtb4 LOC106585803 coding downstream 25769 12792670 ~ 12852646 (-)
si:dkey-40c11.2 LOC106585805 coding downstream 108101 12721753 ~ 12770314 (-)
smn1 LOC106585806 coding downstream 162519 12712292 ~ 12715896 (-)
rtkn rtkn coding downstream 174589 12589060 ~ 12703826 (-)
LOC110525279 LOC106585809 coding downstream 323055 12310179 ~ 12555360 (-)
LOC110525294 LOC106585797 coding upstream 127688 13010282 ~ 13023180 (-)
LOC110525296 arrdc3 coding upstream 143705 13026299 ~ 13046348 (-)
LOC110525300 NA coding upstream 834092 13716686 ~ 13718828 (-)
LOC110525301 NA coding upstream 841699 13724293 ~ 13725852 (-)
fam172a LOC106585793 coding upstream 875604 13758198 ~ 14087746 (-)
G475375 NA non-coding downstream 7138 12861666 ~ 12871277 (-)
G475359 NA non-coding downstream 68198 12809877 ~ 12810217 (-)
G475252 NA non-coding downstream 267675 12610468 ~ 12610740 (-)
G475245 NA non-coding downstream 277727 12599980 ~ 12600688 (-)
G474830 NA non-coding downstream 399719 12478455 ~ 12478696 (-)
G475390 nol6 non-coding upstream 27358 12909952 ~ 12916735 (-)
G475509 NA non-coding upstream 246391 13128985 ~ 13160156 (-)
G475522 NA non-coding upstream 279397 13161991 ~ 13162259 (-)
G475529 NA non-coding upstream 284019 13166613 ~ 13166820 (-)
G475552 NA non-coding upstream 305122 13187716 ~ 13187926 (-)
G474614 NA other downstream 848805 12029159 ~ 12029610 (-)
LOC110525267 LOC106585853 other downstream 921878 11955217 ~ 11979397 (-)
G474030 NA other downstream 1135657 11742202 ~ 11742758 (-)
G473930 NA other downstream 1276418 11601515 ~ 11601997 (-)
G475413 NA other upstream 69658 12952252 ~ 12954051 (-)
G475573 NA other upstream 314721 13197315 ~ 13198012 (-)
G477528 LOC106585763 other upstream 2071499 14954093 ~ 14956050 (-)

Expression

wdr54(wdr54) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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wdr54(wdr54) Expression in each Bioproject

Bar chart with 21 bars.
wdr54(wdr54) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network