LOC110525299 (LOC106585791)


Basic Information

Item Value
gene id LOC110525299
gene name LOC106585791
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 13726709 ~ 13733060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605308.2
GTTTGAGATATTTTTTCTCCCCTTGCTTTATAAATCCCAGCGATCCGTTCGCTTTATAGCACTTTCCGGGCCCGAGATATGGCAATGGTAGTTAGCGTCTGGCGAGATCCGCAGGAAGACGTGGTCGGAGGACCTCCAAGCGGCCCCAATCCAGCAACTCAGCCGGCGAGGGAGCAACAGCAGGCGGCGTCGGCAGCACCGCACACTCCGCAGACCCCAAGTCAGCCAGGACCCCCGTCAACACCAGGGACTGCTGGAGACAAGGGGAGTCAGAATTCTGGACAGAGTGGCGCACAGCATATAGAATGTGTTGTTTGCGGAGACAAATCGAGCGGCAAGCACTATGGTCAGTTCACCTGCGAGGGATGCAAAAGTTTCTTCAAGAGGAGTGTCCGAAGGAACTTAACGTATACATGTCGTGCCAATAGGAACTGTCCCATTGACCAACACCACCGAAATCAGTGCCAATACTGTCGGCTGAAGAAATGTTTAAAAGTGGGAATGCGGCGGGAAGTTCAGCGAGGACGAATGCCTCCAACCCAGCCGAACCCAGGGCAGTACGGGCTGACGAACGGGGACCCTCTGAACGGCCATTGCTATCTCTCCGGATACATCTCGTTATTGCTTCGGGCTGAGCCTTACCCGACGTCCCGATATGGAAGCCAATGCATGCAGCCCAACAATATCATGGGTATTGAGAACATATGCGAGCTGGCAGCTCGCTTGCTCTTCAGCGCCGTGGAATGGGCGAGGAACATCCCTTTCTTTCCAGATCTGCAGATCACCGACCAGGTGTCCCTTCTCAGGCTGACGTGGAGCGAATTGTTTGTGCTAAACGCGGCTCAGTGCTCCATGCCTTTGCATGTGGCCCCTCTGCTCGCCGCGGCAGGCCTCCACGCTTCTCCAATGTCTGCGGACCGAGTCGTGGCTTTCATGGATCACATTCGAATCTTCCAGGAGCAGGTTGAGAAGCTCAAGGCCCTCCACGTTGACTCGGCAGAGTACAGCTGCATCAAGGCGATAGTACTCTTCACATCAGACGCTTGCGGCCTGTCAGATGCGGCTCACATCGAAAGCCTGCAGGAGAAGTCTCAGTGCGCCCTGGAGGAATACGTGAGGAGCCAGTACCCTAACCAGCCCAGCCGCTTTGGCAAGCTCTTGCTGCGGCTTCCATCTCTCCGCACCGTCTCCTCATCGGTAATTGAGCAGCTGTTCTTCGTCCGCTTGGTAGGTAAAACCCCTATTGAAACGCTCATCAGGGATATGCTATTATCCGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAATGATCCGAATGAGAGTgacaaaaagagagaaaaaggaccAAAATTCAGCATCCCGTACAAGAAGACTATATATAGGACATTTTCTGAACATATTGGAAGACAtgacat
>XM_021605307.2
GTTTGAGATATTTTTTCTCCCCTTGCTTTATAAATCCCAGCGATCCGTTCGCTTTATAGCACTTTCCGGGCCCGAGATATGGCAATGGTAGTTAGCGTCTGGCGAGATCCGCAGGAAGACGTGGTCGGAGGACCTCCAAGCGGCCCCAATCCAGCAACTCAGCCGGCGAGGGAGCAACAGCAGGCGGCGTCGGCAGCACCGCACACTCCGCAGACCCCAAGTCAGCCAGGACCCCCGTCAACACCAGGGACTGCTGGAGACAAGGGGAGTCAGAATTCTGGACAGAGTGGCGCACAGCATATAGAATGTGTTGTTTGCGGAGACAAATCGAGCGGCAAGCACTATGGTCAGTTCACCTGCGAGGGATGCAAAAGTTTCTTCAAGAGGAGTGTCCGAAGGAACTTAACGTATACATGTCGTGCCAATAGGAACTGTCCCATTGACCAACACCACCGAAATCAGTGCCAATACTGTCGGCTGAAGAAATGTTTAAAAGTGGGAATGCGGCGGGAAGCGGTTCAGCGAGGACGAATGCCTCCAACCCAGCCGAACCCAGGGCAGTACGGGCTGACGAACGGGGACCCTCTGAACGGCCATTGCTATCTCTCCGGATACATCTCGTTATTGCTTCGGGCTGAGCCTTACCCGACGTCCCGATATGGAAGCCAATGCATGCAGCCCAACAATATCATGGGTATTGAGAACATATGCGAGCTGGCAGCTCGCTTGCTCTTCAGCGCCGTGGAATGGGCGAGGAACATCCCTTTCTTTCCAGATCTGCAGATCACCGACCAGGTGTCCCTTCTCAGGCTGACGTGGAGCGAATTGTTTGTGCTAAACGCGGCTCAGTGCTCCATGCCTTTGCATGTGGCCCCTCTGCTCGCCGCGGCAGGCCTCCACGCTTCTCCAATGTCTGCGGACCGAGTCGTGGCTTTCATGGATCACATTCGAATCTTCCAGGAGCAGGTTGAGAAGCTCAAGGCCCTCCACGTTGACTCGGCAGAGTACAGCTGCATCAAGGCGATAGTACTCTTCACATCAGACGCTTGCGGCCTGTCAGATGCGGCTCACATCGAAAGCCTGCAGGAGAAGTCTCAGTGCGCCCTGGAGGAATACGTGAGGAGCCAGTACCCTAACCAGCCCAGCCGCTTTGGCAAGCTCTTGCTGCGGCTTCCATCTCTCCGCACCGTCTCCTCATCGGTAATTGAGCAGCTGTTCTTCGTCCGCTTGGTAGGTAAAACCCCTATTGAAACGCTCATCAGGGATATGCTATTATCCGGGAGCAGCTTCAACTGGCCTTACATGTCCATCCAATGATCCGAATGAGAGTgacaaaaagagagaaaaaggaccAAAATTCAGCATCCCGTACAAGAAGACTATATATAGGACATTTTCTGAACATATTGGAAGACAtgacatgttgttgtttttttgtcttcTGGGACTAAGATCTGAGATGGAATACGTTATGTACAGAAAATATGGAACTGGACTTACACCTGTTTAAATCCACTCTCATCTTCAAGAACAGTACTCTTCATTTTGTAAAATACTAGTCTTTATTTTccttttttgtaaaaaaaaacaaacaaacaaataaaatgaAAAACAAGACTTAGCGGGAAAATAATGTTTCCAAGCAATTATAAGAAATGTCCTGTGTCTATGTACCcctctgttttgtattttttctggTTCTAAACCAGCTTTTCTGTGATTCTATACTAATAATTTTTATATAACCTTTTGCTTCTTATTATGAGTGCGATATATATGTTGTCGAAGCTACGTTCTCCGAGAATTAAAAGTTGAAGTGGGAATTTAAAacagaaaaataaagaaattTAGACAAA

Function

NR:

description
nuclear receptor subfamily 2 group F member 1-A isoform X1

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08547 NR2F1, TFCOUP1; COUP transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605308.2 False 1419 mRNA 0.54 3 13726709 13732626
XM_021605307.2 True 1856 mRNA 0.48 3 13726709 13733060

Neighbor

gene id symbol gene type direction distance location
LOC118965067 NA coding upstream 401914 13322042 ~ 13324795 (+)
aqp3a LOC106585799 coding upstream 772650 12940770 ~ 12954059 (+)
nol6 nol6 coding upstream 800761 12896951 ~ 12925948 (+)
arsk arsk coding upstream 830933 12888485 ~ 12895776 (+)
LOC110525291 LOC106585801 coding upstream 838373 12882604 ~ 12888336 (+)
gig2p LOC106585755 coding downstream 908672 14641732 ~ 14644594 (+)
LOC110525306 LOC106585757 coding downstream 958504 14691564 ~ 14706855 (+)
LOC110525102 LOC106585759 coding downstream 973817 14706877 ~ 14718733 (+)
LOC110525103 LOC106585761 coding downstream 1103083 14836143 ~ 14890175 (+)
LOC110525309 LOC106585763 coding downstream 1236430 14969490 ~ 14995677 (+)
G476096 NA non-coding upstream 10987 13715507 ~ 13715722 (+)
G476095 NA non-coding upstream 11293 13715181 ~ 13715416 (+)
G476091 NA non-coding upstream 16684 13709819 ~ 13710025 (+)
G476089 NA non-coding upstream 19411 13707059 ~ 13707298 (+)
G476060 NA non-coding upstream 77056 13649385 ~ 13649653 (+)
G476104 NA non-coding downstream 5228 13738288 ~ 13766221 (+)
G476170 NA non-coding downstream 107460 13840520 ~ 13840927 (+)
G476174 NA non-coding downstream 138643 13871703 ~ 13871926 (+)
G476177 NA non-coding downstream 143078 13876138 ~ 13876371 (+)
G476178 NA non-coding downstream 143674 13876734 ~ 13876970 (+)
G475692 NA other upstream 412740 13313679 ~ 13313969 (+)
G474949 NA other upstream 1013411 12712306 ~ 12713298 (+)
G474851 NA other upstream 1222590 12503760 ~ 12504119 (+)
G474321 NA other upstream 1536137 12188288 ~ 12190572 (+)
G473070 NA other upstream 2447444 11278338 ~ 11279265 (+)
G476234 NA other downstream 251780 13984840 ~ 13985259 (+)
G476248 NA other downstream 264024 13997084 ~ 14015564 (+)
G479239 NA other downstream 2626356 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 3246122 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 3367926 17016096 ~ 17126012 (+)

Expression


Co-expression Network