LOC110525103 (LOC106585761)


Basic Information

Item Value
gene id LOC110525103
gene name LOC106585761
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 14836143 ~ 14890175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110525103
AGTAAACCATGAGCAATGAAACAATGCCCGGCATTGATGCAACCACTGTTAATACTCCAAATACGTAACAGAaaactttttaaaacatttttaagagTGTTTTATGTACATGATGAAGATTGTCCTTGTCTAAAGTCTGTCCCTTGGGTCTCTATCGCTGCAAGTCTGGAGCTAGAAGTGGGACGGTATTTGGGAGGCATGAGTGGTCAGATCAGTGTGGTGTTGGAGCCAAGCATCCCCTATTTCCTGCGGGTTGACTGGGCCGAAGACCTGGGTGCTGGTTTCACTCTCGCCCTCAGTGACGGCAGCTCGTCCTGGATCGGAGAAGTACTATAGGAGGAGATGACTGGGAAAGCCACAGAGTTGGGAGTGAAAAGGGAGAAATATGTGAAAGATCTTCATCAGGCACTGACCGGAGGAGGAGAAAgcaaaagaggaagaggaagagtggcAGAAAAGGAGGAGTACCTGTTCCACCTCTCCTCTGACCATGGTTGTCTGTCGTATGACAAGAAGACCCAGAGAGGCGTTTTGGTGAACATGGGTGCAGTGGAGCTGCACCCTGCCCCTGTGGATCTCAACAGGGAGATGATAGCCCACACTCTGGAGCACAGCGCTGACCTGGAGGCAGAGAACAGACGGCTGCAGGAGAAGAATCAGACCCTCCGGCAGGAGCGGCAGCACCTCCTTGCAGAGGTAACTGGGGTAACTGTCAAATCCAAGGCTGGAGACAGCattaaggaggaggaggacctgccTCAGAGCTTCCACCCATCTCAGGCACCCACCGTGCTCAtcagagACATGTCAAGCCAGACGAGCTCTATGGAGGACATTGTGCAAGACAGTAAAGATGTGTTGCCCAGCAGCAAGCATGTGCTCTGTTACCATCAGAGCCCAGAGTTAAAGGTCAAGAAGCCCTCTCCAGACCAGAAGTAA

Function

NR:

description
DNA repair protein XRCC4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110525103 True 939 mRNA 0.51 5 14836143 14890175

Neighbor

gene id symbol gene type direction distance location
LOC110525102 LOC106585759 coding upstream 117410 14706877 ~ 14718733 (+)
LOC110525306 LOC106585757 coding upstream 129288 14691564 ~ 14706855 (+)
gig2p LOC106585755 coding upstream 191549 14641732 ~ 14644594 (+)
LOC110525299 LOC106585791 coding upstream 1103083 13726709 ~ 13733060 (+)
LOC118965067 NA coding upstream 1511348 13322042 ~ 13324795 (+)
LOC110525309 LOC106585763 coding downstream 79315 14969490 ~ 14995677 (+)
LOC110525312 NA coding downstream 837322 15727497 ~ 15730287 (+)
LOC110525007 NA coding downstream 927275 15817450 ~ 15821090 (+)
LOC110525313 LOC106585767 coding downstream 942325 15832500 ~ 15883790 (+)
LOC118964846 NA coding downstream 1278220 16168395 ~ 16175015 (+)
G477365 NA non-coding upstream 16569 14818242 ~ 14819574 (+)
G476995 NA non-coding upstream 128894 14674948 ~ 14707249 (+)
G477008 NA non-coding upstream 155570 14677125 ~ 14680573 (+)
G476980 NA non-coding upstream 199914 14636021 ~ 14636229 (+)
G476943 NA non-coding upstream 247883 14570132 ~ 14588260 (+)
G477404 NA non-coding downstream 7336 14897511 ~ 14897949 (+)
G477405 NA non-coding downstream 8939 14899114 ~ 14899315 (+)
G477407 NA non-coding downstream 12013 14902188 ~ 14902584 (+)
G477409 NA non-coding downstream 15959 14906134 ~ 14906437 (+)
G477549 NA non-coding downstream 108319 14998494 ~ 14998883 (+)
G476248 NA other upstream 820579 13997084 ~ 14015564 (+)
G476234 NA other upstream 850884 13984840 ~ 13985259 (+)
G475692 NA other upstream 1522174 13313679 ~ 13313969 (+)
G474949 NA other upstream 2122845 12712306 ~ 12713298 (+)
G474851 NA other upstream 2332024 12503760 ~ 12504119 (+)
G479239 NA other downstream 1469241 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 2089007 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 2210811 17016096 ~ 17126012 (+)
G480128 NA other downstream 2430599 17320774 ~ 17321165 (+)
G480219 NA other downstream 2554578 17444753 ~ 17445931 (+)

Expression


Co-expression Network