LOC110525007


Basic Information

Item Value
gene id LOC110525007
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 15817450 ~ 15821090 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473690.2
ATGAGATGACACACAGATGCTCAGGCAGCAGCTTCCCGGTTCCCATGACTACATTACATTTATGCTTTGTTAGTCAAATCGGGAAACATCCACTCAGGCATGGTCAAAGAGAATGGGGAAGCTCAAATTGTCAAAAACAATGAAAGAGAAACTCACTAAGATGGCAGCTTTTTTTTAAGGAAAGACGAGGAACACAATATCAATGCAAATTCAAAAAAGAATCCTCAAGCTCAACAGATATTTGTAGTCTACTATTTGTAACACCTGATGACAACAGCCATAAAGCATGATAGCAATGTCACTGATTTTTGTAAAGACCATCATCCCTCATATCACATGAACCATAACCAGCTGGCACATAACATTCTGAGAGCCATATGTTTCTGAGAGCTGGGTGAGAGTGAGTTTGTCCTATGATTATTTTGCATTCAGATGTTAAgaaacgttcttctgtgggaatgtcAGTACTTCTGCAAAACTTTTTCTACTGGTTTCCTCGTGATTCAATAGATAGTCATGCTCTCAAAATGTTCAGAGaacattcttctgtgggaatttcagaaCACTTGAGTAACATTCAGAGAACATTCTAAGaatattatttaaaaacataaattCCATTCTCAGAAGACAAGAAAACAATAGTAACGTTCAAAGAACGTTCTAAAAAATAATAGGACAGATACATTCCATTCTCAGcttcaacaaaactctctctatcctctatctaggTAAAAATACCATATACCATGCAGATATCACCCTGCCATTTCcaggttgctaaaattctaatagtttatgtgacaaaacaagcagtgaTTGTGTAGaggatcattgtaccatctaaaccgctgtgaaatagattttccataaccaaaaatattgtatttttagctgtttgaagctggagttcaaaactgaaagtaaaagactaAAAAACTAAATTTAAGCATGAAATTGcttacatagaacagatctaccacttctaagactggctttcaatgacaATGACAGATCACACATTTTTAATACACATTTCTATgcgaatttggtcaggtcgcccaaaaagtgatTGTAGctttaagtgtgttcaggtgtgatcACACTTAAATTGGCCACATCTGAtattaatgagtgcttgtttcctttgaaatggggtctgtttgaatagactaatgAACAGTTTTCTATGGGTATGCTAGCTCCAGCCTGGTGTTGCAGTGGAATAGTTCCATCGATAGACAACAGAAGATCAGAGCCCTGTTTCAGAAAGCAGGTTTAAACCTGAACTCTGGGTTGACTAACTCTGAGCTGTCAAACTCAAGAGTTTTCAGTTTCAGAACAGGTGATAACAATTAGTTCAATCAACTCTGAGTTAAGTTAACCCTGAGTAAAGTACACACATGAGGAGATAAAAAGCCCTGGTCAATAGAACGCAGATAACATGATTCATCATGGAAACAGGAGAGAAAAGGGCTCAAACCTCCTACTTCTCCCCAGTGGAGTTATATATTAATGAATGTGTATGTGGAATATGAGTATATATTTAAGAAAAAACAATACAGTAGCAGCAGAAAAAGAATGTGAGCTGGCGTGGCAGAAAATTCCTgaccgagtcaatgtGTGCAACCCAACAGGCACAAAATGTACATGGCAGCAACTGAATATGAAATATAAAAATTTCCTTCAAACAGATTTGACCTCCATTATAGCCAATACAAAAAAGGCTGAGGGACAGAAAACCGGTGGGGGCCCTCAATCAAAACAGTGGGTGACCTATTGCTGAAGGCGTCTCTGGAGGAAGCTCATCTGACCCAACCACCCCCCAGAAAGGCCTACATAAAAGtaCAACCCCAAAATGGTTCATTTTCATTACAGGAGGATGACGAAGACACCTTGTCAGCTGCAACAAAGAGGGGGAAAATACAAGCAATTCTGTAAATTACAATGAGGAAGAGGGTCCATCCACCTCCAAAATTCAACAAGATGTTGTTCAGCATTAGCCCATGACTTACAATGAACCCAAGTAGACCTGGCACTGAAACGTACTGTCATTTTTTTGTGTTCCTATAGCTCTTGTGTGAAACCACTGTGCAAGGTGTACTTAGAGAAACAAATTGAAAAATGAAATCTAGAAATTGACCAAGGCTGGAGATGTAAAATATAAAAATAGAAATACAACTGCTAGAACATCAGTTTTGTTTGAGCAACATAAAAAATATTAACTACTGTACTGCATTTGTACTTGTAGAAAATAAAGACTTCATAAA
>XR_002473691.2
ATGAGATGACACACAGATGCTCAGGCAGCAGCTTCCCGGTTCCCATGACTACATTACATTTATGCTTTGTTAGTCAAATCGGGAAACATCCACTCAGGCATGGTCAAAGAGAATGGGGAAGCTCAAATTGTCAAAAACAATGAAAGAGAAACTCACTAAGATGGCAGCTTTTTTTTAAGGAAAGACGAGGAACACAATATCAATGCAAATTCAAAAAAGAATCCTCAAGCTCAACAGATATTTGTAGTCTACTATTTGTAACACCTGATGACAACAGCCATAAAGCATGATAGCAATGTCACTGATTTTTGTAAAGACCATCATCCCTCATATCACATGAACCATAACCAGCTGGCACATAACATTCTGAGAGCCATATGTTTCTGAGAGCTGGGTGAGAGTGAGTTTGTCCTATGATTATTTTGCATTCAGATGTTAAgaaacgttcttctgtgggaatgtcAGTACTTCTGCAAAACTTTTTCTACTGGTTTCCTCGTGATTCAATAGATAGTCATGCTCTCAAAATGTTCAGAGaacattcttctgtgggaatttcagaaCACTTGAGTAACATTCAGAGAACATTCTAAGaatattatttaaaaacataaattCCATTCTCAGAAGACAAGAAAACAATAGTAACGTTCAAAGAACGTTCTAAAAAATAATAGGACAGATACATTCCATTCTCAGcttcaacaaaactctctctatcctctatctaggTAAAAATACCATATACCATGCAGATATCACCCTGCCATTTCcaggttgctaaaattctaatagtttatgtgacaaaacaagcagtgaTTGTGTAGaggatcattgtaccatctaaaccgctgtgaaatagattttccataaccaaaaatattgtatttttagctgtttgaagctggagttcaaaactgaaagtaaaagactaAAAAACTAAATTTAAGCATGAAATTGcttacatagaacagatctaccacttctaagactggctttcaatgacaATGACAGATCACACATTTTTAATACACATTTCTATgcgaatttggtcaggtcgcccaaaaagtgatTGTAGctttaagtgtgttcaggtgtgatcACACTTAAATTGGCCACATCTGAtattaatgagtgcttgtttcctttgaaatggggtctgtttgaatagactaatgAACAGTTTTCTATGGGTATGCTAGCTCCAGCCTGGTGTTGCAGTGGAATAGTTCCATCGATAGACAACAGAAGATCAGAGCCCTGTTTCAGAAAGCAGGTTTAAACCTGAACTCTGGGTTGACTAACTCTGAGCTGTCAAACTCAAGAGTTTTCAGTTTCAGAACAGGTGATAACAATTAGTTCAATCAACTCTGAGTTAAGTTAACCCTGAGTAAAGTACACACATGAGGAGATAAAAAGCCCTGGTCAATAGAACGCAGATAACATGATTCATCATGGAAACAGGAGAGAAAAGGGCTCAAACCTCCTACTTCTCCCCAGTGGAGTTATATATTAATGAATGTGTATGTGGAATATGAGTATATATTTAAGAAAAAACAATACAGTAGCAGCAGAAAAAGAATGTGAGCTGGCGTGGCAGAAAATTCCTgaccgagtcaatgtGTGCAACCCAACAGGCACAAAATGTACATGGCAGCAACTGAATATGAAATATAAAAATTTCCTTCAAACAGCCAATACAAAAAAGGCTGAGGGACAGAAAACCGGTGGGGGCCCTCAATCAAAACAGTGGGTGACCTATTGCTGAAGGCGTCTCTGGAGGAAGCTCATCTGACCCAACCACCCCCCAGAAAGGCCTACATAAAAGtaCAACCCCAAAATGGTTCATTTTCATTACAGGAGGATGACGAAGACACCTTGTCAGCTGCAACAAAGAGGGGGAAAATACAAGCAATTCTGTAAATTACAATGAGGAAGAGGGTCCATCCACCTCCAAAATTCAACAAGATGTTGTTCAGCATTAGCCCATGACTTACAATGAACCCAAGTAGACCTGGCACTGAAACGTACTGTCATTTTTTTGTGTTCCTATAGCTCTTGTGTGAAACCACTGTGCAAGGTGTACTTAGAGAAACAAATTGAAAAATGAAATCTAGAAATTGACCAAGGCTGGAGATGTAAAATATAAAAATAGAAATACAACTGCTAGAACATCAGTTTTGTTTGAGCAACATAAAAAATATTAACTACTGTACTGCATTTGTACTTGTAGAAAATAAAGACTTCATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473690.2 False 2270 mRNA 0.38 5 15817450 15821090
XR_002473691.2 True 2252 mRNA 0.38 5 15817450 15821090

Neighbor

gene id symbol gene type direction distance location
LOC110525312 NA coding upstream 87171 15727497 ~ 15730287 (+)
LOC110525309 LOC106585763 coding upstream 821773 14969490 ~ 14995677 (+)
LOC110525103 LOC106585761 coding upstream 927275 14836143 ~ 14890175 (+)
LOC110525102 LOC106585759 coding upstream 1098717 14706877 ~ 14718733 (+)
LOC110525306 LOC106585757 coding upstream 1110595 14691564 ~ 14706855 (+)
LOC110525313 LOC106585767 coding downstream 11410 15832500 ~ 15883790 (+)
LOC118964846 NA coding downstream 347305 16168395 ~ 16175015 (+)
LOC110525319 olfm1 coding downstream 816453 16637543 ~ 16654193 (+)
slc2a6 slc2a6 coding downstream 929917 16751007 ~ 16762323 (+)
LOC110525325 LOC106585782 coding downstream 948300 16769390 ~ 16773568 (+)
G478430 NA non-coding upstream 140544 15676647 ~ 15676906 (+)
G478424 NA non-coding upstream 144957 15672168 ~ 15672493 (+)
G478375 NA non-coding upstream 204994 15611533 ~ 15612456 (+)
G478370 NA non-coding upstream 215217 15602013 ~ 15602233 (+)
G478514 NA non-coding downstream 61622 15882712 ~ 15883517 (+)
G478560 NA non-coding downstream 67004 15888094 ~ 15888372 (+)
G478742 NA non-coding downstream 112189 15933279 ~ 15991347 (+)
G478794 NA non-coding downstream 187267 16008357 ~ 16011192 (+)
G478821 NA non-coding downstream 228030 16049120 ~ 16049354 (+)
G476248 NA other upstream 1801886 13997084 ~ 14015564 (+)
G476234 NA other upstream 1832191 13984840 ~ 13985259 (+)
G475692 NA other upstream 2503481 13313679 ~ 13313969 (+)
G474949 NA other upstream 3104152 12712306 ~ 12713298 (+)
G474851 NA other upstream 3313331 12503760 ~ 12504119 (+)
G479239 NA other downstream 538326 16359416 ~ 16359751 (+)
traf1 LOC106585784 other downstream 1158092 16970834 ~ 16982251 (+)
dab2ipa LOC106585786 other downstream 1279896 17016096 ~ 17126012 (+)
G480128 NA other downstream 1499684 17320774 ~ 17321165 (+)
G480219 NA other downstream 1623663 17444753 ~ 17445931 (+)

Expression


Co-expression Network