LOC110525316


Basic Information

Item Value
gene id LOC110525316
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16085395 ~ 16169524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473737.2
gttctctctctcgctcactctcccccccccgccccctccctctcaatctctccttctctcatgtgCTTGGAATATGCTCAGGGTTAACTCAGAGCAACCGAAGCACGCGTAATGAACTGAGTATTAGCGGCAATTTTAAAGGAAGGGACGGCCTTGGAAGGCTGGATATTTGGCGGACTGTCCAACGGGTCCCACACAGCATGTATCTTATCTGGGATGATTTCTGATTGCATATGCCGATTTCGGCGATGCTTCTCGCGCAGTTTGAGAAAGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGTAAACATCAAAGGGAATATTTTTGTACTTTCTCAAATCACTGTATTTTCTCAGTGAGCAGAATAAAATATATTCAAGAATATCTTGTTTCTGAGTTTTttacagtatgtctacagtactgtatataccTTTGACATGACTAGATCCTCTGTGGGATCAATGTGGAATGGGTGCTGATCAAAATAAAACAACATGGCTGACA
>XR_002473738.2
AATGTTAAAAAGTAATAATACGCACGCTGGAACCAACAGCGTCGAAGCATTGAGAATGGCAGAGCAGGTCGTCTCATTATGCACAGGCGATTTCCCAGGCAGAACCCTTGGTTTCTTCACTTCATGTTTCCGATCCGTACCGCTCACACACGCTCGGAGCTTCGTCAAAAACAAACAAGGCAATGTTCGCTTTCAAAACGGCAATCAAATACCCAAGAACCGGTGGGGGGAATTACTCCCACAGCGGCTAGATGGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGTAAACATCAAAGGGAATATTTTTGTACTTTCTCAAATCACTGTATTTTCTCAGTGAGCAGAATAAAATATATTCAAGAATATCTTGTTTCTGAGTTTTttacagtatgtctacagtactgtatataccTTTGACATGACTAGATCCTCTGTGGGATCAATGTGGAATGGGTGCTGATCAAAATAAAACAACATGGCTGACA
>XR_002473736.2
CGTCTGACCACTTCTATTGGGTGACACATCAGACGAGCAGTTTGGGAGCAAGGTTCACTTGTGGAGGAGGCTGAGTTACACGAGTAAGGAGTACAGCATCTCCAACCCGCTCGCACAATCAAATGCGCTGGAAAATTGGCGTCGACTTGATTGAGAGCGCGTGCATATCCTGCCAGGAAGATTTGAATGGTGATGTAAAATATAAGGGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGTAAACATCAAAGGGAATATTTTTGTACTTTCTCAAATCACTGTATTTTCTCAGTGAGCAGAATAAAATATATTCAAGAATATCTTGTTTCTGAGTTTTttacagtatgtctacagtactgtatataccTTTGACATGACTAGATCCTCTGTGGGATCAATGTGGAATGGGTGCTGATCAAAATAAAACAACATGGCTGACA
>TU544457
CATCAGACGAGCAGTTTGGGAGCAAGGTTCACTTGTGGAGGAGGCTGAGTTACACGAGTAAGGAGTACAGCATCTCCAACCCGCTCGCACAATCAAATGCGCTGGAAAATTGGCGTCGACTTGATTGAGAGCGCGTGCATATCCTGCCAGGAAGATTTGAATGGTGATGTAAAATATAAGGGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGTAAACATCAAAGGGAATATTTTTGTACTTTCTCAAATCACTGTATTTTCTCAGTGAGCAGAATAAAATATATTCAAGAATATCTTGTTTCTGAGTTTTttacagtatgtctacagtactgtatataccTTTGACATGACTAGATCCTCTGTGGGATCAATGTGGAATGGGTGCTGATCAAAATAAAACAACATGGCTGAC
>TU544460
GCAACCGAAGCACGCGTAATGAACTGAGTATTAGCGGCAATTTTAAAGGAAGGGACGGCCTTGGAAGGCTGGATATTTGGCGGACTGTCCAACGGGTCCCACACAGCATGTATCTTATCTGGGATGATTTCTGATTGCATATGCCGATTTCGGCGATGCTTCTCGCGCAGTTTGAGAAAGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGTAAACATCAAAGGGAATATTTTTGTACTTTCTCAAATCACTGTATTTTCTCAGTGAGCAGAATAAAATATATTCAAGAATATCTTGTTTCTGAGTTTTttacagtatgtctacagtactgtatataccTTTGACATGACTAGATCCTCTGTGGGATCAATGTGGAATGGGTGCTGATCAAAATAAAACAACATGGCTGAC
>TU544465
GATCCGTACCGCTCACACACGCTCGGAGCTTCGTCAAAAACAAACAAGGCAATGTTCGCTTTCAAAACGGCAATCAAATACCCAAGAACCGGTGGGGGGAATTACTCCCACAGCGGCTAGATGGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGTAAACATCAAAGGGAATATTTTTGTACTTTCTCAAATCACTGTATTTTCTCAGTGAGCAGAATAAAATATATTCAAGAATATCTTGTTTCTGAGTTTTttacagtatgtctacagtactgtatataccTTTGACATGACTAGATCCTCTGTGGGATCAATGTGGAATGGGTGCTGATCAAAATAAAACAACATGGCTGAC
>TU544456
CATCAGACGAGCAGTTTGGGAGCAAGGTTCACTTGTGGAGGAGGCTGAGTTACACGAGTAAGGAGTACAGCATCTCCAACCCGCTCGCACAATCAAATGCGCTGGAAAATTGGCGTCGACTTGATTGAGAGCGCGTGCATATCCTGCCAGGAAGATTTGAATGGTGATGTAAAATATAAGGGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGT
>TU544458
GCAACCGAAGCACGCGTAATGAACTGAGTATTAGCGGCAATTTTAAAGGAAGGGACGGCCTTGGAAGGCTGGATATTTGGCGGACTGTCCAACGGGTCCCACACAGCATGTATCTTATCTGGGATGATTTCTGATTGCATATGCCGATTTCGGCGATGCTTCTCGCGCAGTTTGAGAAAGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGT
>TU544463
GATCCGTACCGCTCACACACGCTCGGAGCTTCGTCAAAAACAAACAAGGCAATGTTCGCTTTCAAAACGGCAATCAAATACCCAAGAACCGGTGGGGGGAATTACTCCCACAGCGGCTAGATGGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGT
>TU544464
CAACAGCGTCGAAGCATTGAGAATGGCAGAGCAGGTCGTCTCATTATGCACAGGCGATTTCCCAGGCAGAACCCTTGGTTTCTTCACTTCATGTTTCCGATCCGTACCGCTCACACACGCTCGGAGCTTCGTCAAAAACAAACAAGGCAATGTTCGCTTTCAAAACGGCAATCAAATACCCAAGAACCGGTGGGGGGAATTACTCCCACAGCGGCTAGATGGAGAAATATGGCCCTGATTCCCCTGCTCAGGAGAGAGGCCAAATGGACATGTCTGTCTGGGACTTTGCCTACTGCTGAACCAACATGAGCTCAGGTGAGAGAGGAGTCATCAGGAGCCAGACAGAGAGTACCAGGATAACGGCTGTGTCCATGTGTTAAGGATGACCCACAGATCACAGAGATGGAGCATCTATCTGCGTGACCCTTTACTGTTGTCTCTAGTGGGGCTCGAGACATGGGCTTCGATCACCACCTGAACATCAACATGCACAACCATCAAGATACAGTACACTGAGAAGACAGATACAGAACTCTACTATTTATAATCAGCATGCATACACCTGTTCTAGATACACAGAAACCACCAAATACACACTAACATCCTTTGAATCAAGTCAGTTTTTTGTATCATTGTGATTTAAATCTGTAAGTTGTAAAACTGTTTACCATATGTCTACTCACTGGGATGTAGAAGTACAACATTATTTATTCTGAATTGTAAAAGTCTGTATTAGTATATTGGATTTTGAATGAACCTGTCCTTAGAATACAGCATAACATCTGAAGGGAACCCGCAGGACACATTGTCTTTATCTGGCATTGACTGAATTTATAGAAAAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473737.2 False 1095 mRNA 0.42 4 16085395 16167075
XR_002473738.2 False 1077 mRNA 0.42 4 16085395 16168556
XR_002473736.2 False 1030 mRNA 0.41 4 16085395 16169524
TU544457 False 1003 lncRNA 0.41 4 16085396 16169498
TU544460 False 1001 lncRNA 0.41 4 16085396 16166982
TU544465 False 945 lncRNA 0.41 4 16085396 16168425
TU544456 False 804 lncRNA 0.43 4 16085595 16169498
TU544458 False 802 lncRNA 0.43 4 16085595 16166982
TU544463 False 746 lncRNA 0.43 4 16085595 16168425
TU544464 True 844 lncRNA 0.44 4 16085595 16168523

Neighbor

gene id symbol gene type direction distance location
LOC110525314 LOC106585770 coding downstream 36461 16017955 ~ 16048934 (-)
LOC118965069 NA coding downstream 162293 15921001 ~ 15923102 (-)
LOC110525008 NA coding downstream 173484 15909810 ~ 15911911 (-)
LOC118965068 NA coding downstream 184675 15898619 ~ 15900720 (-)
LOC118964845 NA coding downstream 195866 15887428 ~ 15889529 (-)
LOC110525107 LOC100500787 coding upstream 5255 16174779 ~ 16286350 (-)
LOC110525318 rxra coding upstream 368597 16538121 ~ 16574149 (-)
LOC110525321 cssa24h9orf116 coding upstream 516269 16685793 ~ 16694405 (-)
LOC110525322 LOC106585778 coding upstream 537732 16707256 ~ 16730072 (-)
LOC110525323 stkld1 coding upstream 561265 16730789 ~ 16739097 (-)
G479055 NA non-coding downstream 14196 16070975 ~ 16071199 (-)
G479051 NA non-coding downstream 22534 16062642 ~ 16062861 (-)
G479050 NA non-coding downstream 23114 16062027 ~ 16062281 (-)
G479044 NA non-coding downstream 27817 16057317 ~ 16057578 (-)
G479040 NA non-coding downstream 31707 16053446 ~ 16053688 (-)
G479150 NA non-coding upstream 90112 16259636 ~ 16260150 (-)
G479236 NA non-coding upstream 188257 16357781 ~ 16358043 (-)
G479262 NA non-coding upstream 211677 16381201 ~ 16381414 (-)
G479267 NA non-coding upstream 215193 16384717 ~ 16385425 (-)
G479288 NA non-coding upstream 232306 16401830 ~ 16402129 (-)
G478734 NA other downstream 201885 15881636 ~ 15883510 (-)
G478730 LOC106585767 other downstream 213597 15869799 ~ 15871798 (-)
G478643 NA other downstream 355812 15727490 ~ 15730279 (-)
G477528 LOC106585763 other downstream 1129345 14954093 ~ 14956050 (-)
fam172a LOC106585793 other downstream 1997714 13758198 ~ 14087746 (-)
G479533 NA other upstream 419748 16589272 ~ 16593771 (-)
git2a LOC106585671 other upstream 1887687 18056651 ~ 18084926 (-)
LOC110525370 LOC106585675 other upstream 1954573 18121017 ~ 18139654 (-)
G482323 NA other upstream 2787962 18957486 ~ 18963891 (-)

Expression


Co-expression Network