LOC110525322 (LOC106585778)


Basic Information

Item Value
gene id LOC110525322
gene name LOC106585778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16707256 ~ 16730072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605342.2
CGGCCGCGTGCTGTTATCGGGCTACACGGATGGGTGCCCCACATGTAGGAGCAAAAATCAACCCGATATCTGACGGCAAATCACAATTTTTAATGACTGGATGTGTCGGTGAAAAGCTACACAAACCTTTGTACTCAGATATAGTTCTGAACAATACCATTGGGCGCATGCTTAGAAATCGTGGATAATTTGGTAGAAATTGCTCTGAGACCATGAGTTGCAGATGGGGGACGGAGCTGTGGGACCAGTTTGACAACTTGGAAAAACACACCCACTGGGGCATTGAGTTTGTGGAGAAGTATACAAAATTTGTCAAAGAGAGATCTGAAATTGAAATCAGCTATGCAAAGCAAATCAGAAATCTATCGAAAAAATATCAGCCCAAGAAAAACTCAAGAGAGGAAGATGAATACAAGTACACGTCCTGTCGGGCCTTCCTGATGACCCTGAACGAGCTGAACGACTATGCGGGACAACACGAGGTCATGGCTGAGGATCTCACCACTCACATCATCTGTGAGCTGACGCGGTACATCCAGGAGTTAAAAGCAGAGAGGAAATCGCATTTCCATGATGGCCACAGAGCTCAGCAACACATTGAGAATTCTTGGAAACAACTAGAATCCAGTAAACGGAGATTTGAGAGAGACTGTAAGGAGGCGGATAGAGCCCAGCAGTACTTCGACAAGATAGATGCTGACATCAACGTGACTAAAGCAGACGTCGAAAAGCGGTGCTATCTCAAGGCCAGACAGCAGGCCCAGATGAAACACCAAGTGGCAGAGGACAGCAAGAATGAATACCTCACCTTCCTGCAGAAGTTCAACAAAGAGCAGAATGCACATTATCATACCCTCATACCTCACATCTTTCAGAAACTACAGGAGATGGAAGAAAAACgtatagagagagtgggagagtctATGAAGACTTACGCAGAGGTCGATCGGAAAGTGCTACCTATTGTTGGCAAATGTTTAGATGGTATGACCAAAGCAGCAGAATCCATAGAGCCAAAAATGGACACCAAGCATGTGGTGGAATCCTACAAGTCTGGCTTCGAGCCACCCGGCGACGTAGAGGTTGAGGACTATAGTCTGTCTATGAGGCGGACAGTGTCAGAGTCCAGCTATCTAAACTCGCAAGGGGAGACCAAGCCCAGCCGCAGCAACAGCAGGGGAAAACTGTGGCCTTTCATCAAGAGAAACAAGCTTATGTCTTTGTTAGCTTCCCCACGccaaccaccccctctcccccctaCCTCCCCATCACCTGCTGCCGTGCACAACGGCCCCCAGTCTCCCCAGCAACCCAGTGAGCCCCTCTCCCACCGCCTCAACGAGTTCATGACCTCCAAACATAAAATGCAATGCTTAAGGAGTCTGAAGCGTGGGCTTTCTCTCAAGCTGGGTTCTGGCCCTGAAGATTGTAGTCACCTGCCTCCTGAACAGAGGAGGAAGAAGCTACAGGCCAAAATCAATGACATCAACAAGGAAATACAAAAAGAGATGGATCAGAGGGATGCTCTGTCTACAATGAAGGACGTGTACATAAAGAACCCACACATGGGGGACGCCAACAGTGTGGACCCACGATTAGAGGAGATCTGCCAAAATACTGACAAGTTACAACTGGATGCAAGGAAATATGAAGCCTGGCTGGTAGAGGTGGAGACCAGGTTAGCAGAGAAAAGTGACAAACACAGACCACCAAGTGGATTGTACAACTCCCAGACTACTACACCAGTGAACAACAACTGTGCACATGTCAACCGAGAGAGCCCGGACGGAAGCTACACAGAGGATCATAGCACAGAGCATCACCTCAAATCTCGGAGCACCGACTTTGATGACGACTTTGATTACGAGGACCCACTCCCCACTATCGGAACCTGCAAATCACTCTACCCTTTCGAAGGTCAGAACGAAGGCACCATTTCCATGACCGAGGGGGAGCTGCTGTATGTCATCGAGGAGGATAAGGGTGACGGGTGGACGCGGGTGCGCAGGAACGAGGATGAAGAGGGATACGTACCCACATCTTACATCAAGGTCTTTTTCGACACAAATGCCAAAGGTGCTATGACATACATATAATTGTCATTGTTTGAGAGAGGGGAAATGGGTGGAGCAGCAAAAACAAATATCCTGACATTTCAAACCCCCTGAACTCTGGTGTTTCAGAAATATCACAGAATGATTTGAGACGGAACTCTCAGATCAACGGACTGTATTTACATTTATACTTGGGCTTTTTACGTTCTACCATTTTGCTCCCGTTGAAACTCATTGTGGAgaagtgtttgtttgtgtgtatgaagACGTGTGGATGTGATAAGTTGTCAGAACCAAGTTAAGTTGTCTCGACCCCACTGTCGATATCAGCTACGCCTTAACTTCTAGCACTAATAATAATAACCCATGTcaatttattgatttatttgacCAACAAAATACAGTTTCTCATATTAGAGAGCATTGCATCTAAACATATAAATTCCTATTTGGAATAGCTATTATTGCATGCCTAAAGGGAGGCTCGTTATGCTCTGCCAGCCTCCACTGCATTGCATTGACAGTACATCGCAAATCTGCACTTGAGCAACCATCATTGGCAGGAGATTACTGAAAGATTGCCTCTCTGCTTCACAAATTAAATCAGTTGTTGCATGTGGCATGTTTCAAAGAGGACATGCCTGTTCACACAGTAAAGGTAAAGAACATGGCTTGCATGTTATCTTGATTAGGATGGTACAACAGACTAGTAACATATTCTCTTCTACAAACTGTTGTTGACTTTCCTCCAAAATCTGACAAAGGGGCTTCATTGAAGCGCCTAAATGACTGAATGTTGTGCTAGGTTTACAGTGGTGTTCTCCACAGACAAGCGTTCATTTCATTCTGAGACACATGGTAACGCACCCACCACCATTCTATCATTGGCATGTgattcattgtttttttttagaATGAATAATATATCCCTGCTttgcttttttttatttgatacGGAGTTGTTCTGCATGCTTGAGCCAATTGATAAGTCAAAGTAAGTCAAATCAGATGAATGAACATAGTATTGCAACCAGGTGATATTCCTCTGTTTGGAAAATGATTAACACATGTAGCCTCAAGTTTTCTGTATGTTGATTTGCCATTGACGGTCAGAAACCTGCTCTGGTGCAGCATAGACTCAACTCTAGAGAAACGTTATCTGCCACAATCATTTTCAGAATGTGAAGGAATGTCATGGAATGACTTTCCTCGTGTCTTGATGCATCACCTCTAACATGTCGtgtcatttttgtttgtttgcttttttTGTTTGCTTTTTTTCTTATTGCAGATTCCTAAAAGTCTTTGGCTCGCACAGGGATGGCAGGGCACAGGTCCTTCAAAAAGCGCCCTCCTCTTAAAACTGTAGTCAGAGAGACGACAGACTAAAGGGACAAGTTGCAAGGCAGTCCAGTTTGTGACCCAGTACAGGAATCCATTGTGGGGTTCTGTTGAATGGAGCAAAAACAACACACATTGCGGGGCAACCACCATTTCTAGTCATTTTCCTATTGATTGTTTCTGCAAGCTTGCTTGTTGTTTTTCTAACTGCAGATGAGTATGTTCATGTTGTGGCTGCTTGCTATTCTACTGTACCTTGAGCCCAGGGGCGGTACCTGTTTAAGGGGAGGGGGGAGTCTGAGATGGCCTTGTTACATATTGACTATTCCAAACCTGCCTTCAAGCTATCATCACAACAAACACTAAACTTAGGAAAATACCCATGGAAAACACCACTACACTTGGGCTGGAATTCAATTGCTTAATCCCCATTGCAAAGCCACTGTGTCTGCgccacaaaaaaacatgtttacagtAATGTCAATTAGATAAAACAGTCCAAGTCTTTCTTAGCACTGGAACAATGTTGCTGATTTTCCAGGGGAATTCAATTCCAGCTCTTATTCAACACAGTAATGCCTCACGATTACTGTACACACCCATGTTTCTATTTTGGGGTATATAGGTTATATACCGATCATACTTAAATGACACCGATTGTTGGCTTGCAACAAATCTGCACAAATTTGTTCTGGCACCAATTTTACTTTTGAGTTTTAGTTGGAAACTTTGACAAATGGGtgcattgtgttatagtctaACTCAAGCACTCGGTGCAGGTCTACTGGTAAGCATACAATCTGAGCGGAGATGACGGATCTCTCATTTTGCTTTCTCCTATTGCTTTTCAATATGAGTGACAGCTGCTCTCTCTGGCTACACCGCCATACATGCAGTAACTATGGTGATTGTCTCACAACTCTTTGTCCGTCTCTCACACTTTgtttttccttttctctctctttctggctaCTTGTGGTGGCGGAAGCTACTCTTCGGTTGGCGCTTTGTTTCTCTACGCATGCTTGCCCTGTCATGCCTGTGCCAGTCCTATAGGGAGTCTGACTATCTATTACGTTAACTCATCACTTATGGGGTCCTACCTTGTTCCTTTCTTACCCTGTGTTTGTGCCTGTGGTTTTGTCATTTTAACAAAACGTGTTTGTGATTTCTTTTGTCAATGCAAGCATGACCATTTTGCTTCAAGGAATTGTTGATATGTCCATGCAGTTTTGCCATCTTCCAGAGAGACACTGACAGTTTCATATCTCACTTCTGTTTTAAAGCTTATTTTCACTGAAGTTAATCTGGGAGCTGCAGCTCTTTGCATTAGCTGATTACCAACCCACACTGACAAATGGCAGTATTTGTATGTCTACTGATAGAGATGCATATTACCGAACTGAAGTTTCAGTGTATTCTAGAAGTATTTTGTGCTTTGAATTCACTGTGTACTGTTCCTTATATTGTACAAAACTGGTGTGAAAGCAAGGTTTGTTTCTTGACTGTTGACATTAATGATGTAATTATATACTCTGGTGTGCGATATGTGATAACTATATGCTAAAGCTTGGaatcatgtttattttttttcttagTCAAATAATGCccgttttctttattttgagaAGAATAATACCTCTGTTCCACGTTGGGATTTGTTTCACCTTGAAATGTTTTCTGAAATCTGATATACTATGTTGGAGTTTGGAAATAAATGACACTATGAAATGGAAA
>XM_021605343.2
CGGCCGCGTGCTGTTATCGGGCTACACGGATGGGTGCCCCACATGTAGGAGCAAAAATCAACCCGATATCTGACGGCAAATCACAATTTTTAATGACTGGATGTGTCGGTGAAAAGCTACACAAACCTTTGTACTCAGATATAGTTCTGAACAATACCATTGGGCGCATGCTTAGAAATCGTGGATAATTTGGTAGAAATTGCTCTGAGACCATGAGTTGCAGATGGGGGACGGAGCTGTGGGACCAGTTTGACAACTTGGAAAAACACACCCACTGGGGCATTGAGTTTGTGGAGAAGTATACAAAATTTGTCAAAGAGAGATCTGAAATTGAAATCAGCTATGCAAAGCAAATCAGAAATCTATCGAAAAAATATCAGCCCAAGAAAAACTCAAGAGAGGAAGATGAATACAAGTACACGTCCTGTCGGGCCTTCCTGATGACCCTGAACGAGCTGAACGACTATGCGGGACAACACGAGGTCATGGCTGAGGATCTCACCACTCACATCATCTGTGAGCTGACGCGGTACATCCAGGAGTTAAAAGCAGAGAGGAAATCGCATTTCCATGATGGCCACAGAGCTCAGCAACACATTGAGAATTCTTGGAAACAACTAGAATCCAGTAAACGGAGATTTGAGAGAGACTGTAAGGAGGCGGATAGAGCCCAGCAGTACTTCGACAAGATAGATGCTGACATCAACGTGACTAAAGCAGACGTCGAAAAGCGGTGCTATCTCAAGGCCAGACAGCAGGCCCAGATGAAACACCAAGTGGCAGAGGACAGCAAGAATGAATACCTCACCTTCCTGCAGAAGTTCAACAAAGAGCAGAATGCACATTATCATACCCTCATACCTCACATCTTTCAGAAACTACAGGAGATGGAAGAAAAACgtatagagagagtgggagagtctATGAAGACTTACGCAGAGGTCGATCGGAAAGTGCTACCTATTGTTGGCAAATGTTTAGATGGTATGACCAAAGCAGCAGAATCCATAGAGCCAAAAATGGACACCAAGCATGTGGTGGAATCCTACAAGTCTGGCTTCGAGCCACCCGGCGACGTAGAGGTTGAGGACTATAGTCTGTCTATGAGGCGGACAGTGTCAGAGTCCAGCTATCTAAACTCGCAAGGGGAGACCAAGCCCAGCCGCAGCAACAGCAGGGGAAAACTGTGGCCTTTCATCAAGAGAAACAAGGGTTCTGGCCCTGAAGATTGTAGTCACCTGCCTCCTGAACAGAGGAGGAAGAAGCTACAGGCCAAAATCAATGACATCAACAAGGAAATACAAAAAGAGATGGATCAGAGGGATGCTCTGTCTACAATGAAGGACGTGTACATAAAGAACCCACACATGGGGGACGCCAACAGTGTGGACCCACGATTAGAGGAGATCTGCCAAAATACTGACAAGTTACAACTGGATGCAAGGAAATATGAAGCCTGGCTGGTAGAGGTGGAGACCAGGTTAGCAGAGAAAAGTGACAAACACAGACCACCAAGTGGATTGTACAACTCCCAGACTACTACACCAGTGAACAACAACTGTGCACATGTCAACCGAGAGAGCCCGGACGGAAGCTACACAGAGGATCATAGCACAGAGCATCACCTCAAATCTCGGAGCACCGACTTTGATGACGACTTTGATTACGAGGACCCACTCCCCACTATCGGAACCTGCAAATCACTCTACCCTTTCGAAGGTCAGAACGAAGGCACCATTTCCATGACCGAGGGGGAGCTGCTGTATGTCATCGAGGAGGATAAGGGTGACGGGTGGACGCGGGTGCGCAGGAACGAGGATGAAGAGGGATACGTACCCACATCTTACATCAAGGTCTTTTTCGACACAAATGCCAAAGGTGCTATGACATACATATAATTGTCATTGTTTGAGAGAGGGGAAATGGGTGGAGCAGCAAAAACAAATATCCTGACATTTCAAACCCCCTGAACTCTGGTGTTTCAGAAATATCACAGAATGATTTGAGACGGAACTCTCAGATCAACGGACTGTATTTACATTTATACTTGGGCTTTTTACGTTCTACCATTTTGCTCCCGTTGAAACTCATTGTGGAgaagtgtttgtttgtgtgtatgaagACGTGTGGATGTGATAAGTTGTCAGAACCAAGTTAAGTTGTCTCGACCCCACTGTCGATATCAGCTACGCCTTAACTTCTAGCACTAATAATAATAACCCATGTcaatttattgatttatttgacCAACAAAATACAGTTTCTCATATTAGAGAGCATTGCATCTAAACATATAAATTCCTATTTGGAATAGCTATTATTGCATGCCTAAAGGGAGGCTCGTTATGCTCTGCCAGCCTCCACTGCATTGCATTGACAGTACATCGCAAATCTGCACTTGAGCAACCATCATTGGCAGGAGATTACTGAAAGATTGCCTCTCTGCTTCACAAATTAAATCAGTTGTTGCATGTGGCATGTTTCAAAGAGGACATGCCTGTTCACACAGTAAAGGTAAAGAACATGGCTTGCATGTTATCTTGATTAGGATGGTACAACAGACTAGTAACATATTCTCTTCTACAAACTGTTGTTGACTTTCCTCCAAAATCTGACAAAGGGGCTTCATTGAAGCGCCTAAATGACTGAATGTTGTGCTAGGTTTACAGTGGTGTTCTCCACAGACAAGCGTTCATTTCATTCTGAGACACATGGTAACGCACCCACCACCATTCTATCATTGGCATGTgattcattgtttttttttagaATGAATAATATATCCCTGCTttgcttttttttatttgatacGGAGTTGTTCTGCATGCTTGAGCCAATTGATAAGTCAAAGTAAGTCAAATCAGATGAATGAACATAGTATTGCAACCAGGTGATATTCCTCTGTTTGGAAAATGATTAACACATGTAGCCTCAAGTTTTCTGTATGTTGATTTGCCATTGACGGTCAGAAACCTGCTCTGGTGCAGCATAGACTCAACTCTAGAGAAACGTTATCTGCCACAATCATTTTCAGAATGTGAAGGAATGTCATGGAATGACTTTCCTCGTGTCTTGATGCATCACCTCTAACATGTCGtgtcatttttgtttgtttgcttttttTGTTTGCTTTTTTTCTTATTGCAGATTCCTAAAAGTCTTTGGCTCGCACAGGGATGGCAGGGCACAGGTCCTTCAAAAAGCGCCCTCCTCTTAAAACTGTAGTCAGAGAGACGACAGACTAAAGGGACAAGTTGCAAGGCAGTCCAGTTTGTGACCCAGTACAGGAATCCATTGTGGGGTTCTGTTGAATGGAGCAAAAACAACACACATTGCGGGGCAACCACCATTTCTAGTCATTTTCCTATTGATTGTTTCTGCAAGCTTGCTTGTTGTTTTTCTAACTGCAGATGAGTATGTTCATGTTGTGGCTGCTTGCTATTCTACTGTACCTTGAGCCCAGGGGCGGTACCTGTTTAAGGGGAGGGGGGAGTCTGAGATGGCCTTGTTACATATTGACTATTCCAAACCTGCCTTCAAGCTATCATCACAACAAACACTAAACTTAGGAAAATACCCATGGAAAACACCACTACACTTGGGCTGGAATTCAATTGCTTAATCCCCATTGCAAAGCCACTGTGTCTGCgccacaaaaaaacatgtttacagtAATGTCAATTAGATAAAACAGTCCAAGTCTTTCTTAGCACTGGAACAATGTTGCTGATTTTCCAGGGGAATTCAATTCCAGCTCTTATTCAACACAGTAATGCCTCACGATTACTGTACACACCCATGTTTCTATTTTGGGGTATATAGGTTATATACCGATCATACTTAAATGACACCGATTGTTGGCTTGCAACAAATCTGCACAAATTTGTTCTGGCACCAATTTTACTTTTGAGTTTTAGTTGGAAACTTTGACAAATGGGtgcattgtgttatagtctaACTCAAGCACTCGGTGCAGGTCTACTGGTAAGCATACAATCTGAGCGGAGATGACGGATCTCTCATTTTGCTTTCTCCTATTGCTTTTCAATATGAGTGACAGCTGCTCTCTCTGGCTACACCGCCATACATGCAGTAACTATGGTGATTGTCTCACAACTCTTTGTCCGTCTCTCACACTTTgtttttccttttctctctctttctggctaCTTGTGGTGGCGGAAGCTACTCTTCGGTTGGCGCTTTGTTTCTCTACGCATGCTTGCCCTGTCATGCCTGTGCCAGTCCTATAGGGAGTCTGACTATCTATTACGTTAACTCATCACTTATGGGGTCCTACCTTGTTCCTTTCTTACCCTGTGTTTGTGCCTGTGGTTTTGTCATTTTAACAAAACGTGTTTGTGATTTCTTTTGTCAATGCAAGCATGACCATTTTGCTTCAAGGAATTGTTGATATGTCCATGCAGTTTTGCCATCTTCCAGAGAGACACTGACAGTTTCATATCTCACTTCTGTTTTAAAGCTTATTTTCACTGAAGTTAATCTGGGAGCTGCAGCTCTTTGCATTAGCTGATTACCAACCCACACTGACAAATGGCAGTATTTGTATGTCTACTGATAGAGATGCATATTACCGAACTGAAGTTTCAGTGTATTCTAGAAGTATTTTGTGCTTTGAATTCACTGTGTACTGTTCCTTATATTGTACAAAACTGGTGTGAAAGCAAGGTTTGTTTCTTGACTGTTGACATTAATGATGTAATTATATACTCTGGTGTGCGATATGTGATAACTATATGCTAAAGCTTGGaatcatgtttattttttttcttagTCAAATAATGCccgttttctttattttgagaAGAATAATACCTCTGTTCCACGTTGGGATTTGTTTCACCTTGAAATGTTTTCTGAAATCTGATATACTATGTTGGAGTTTGGAAATAAATGACACTATGAAATGGAAA

Function

NR:

description
PREDICTED: formin-binding protein 1-like isoform X5

GO: NA

KEGG:

id description
K20121 FNBP1; formin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605342.2 False 5132 mRNA 0.43 17 16707256 16730072
XM_021605343.2 True 4934 mRNA 0.43 15 16707256 16730072
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110525321 cssa24h9orf116 coding downstream 12851 16685793 ~ 16694405 (-)
LOC110525318 rxra coding downstream 133107 16538121 ~ 16574149 (-)
LOC110525107 LOC100500787 coding downstream 420906 16174779 ~ 16286350 (-)
LOC110525316 NA coding downstream 537732 16085395 ~ 16169524 (-)
LOC110525314 LOC106585770 coding downstream 658322 16017955 ~ 16048934 (-)
LOC110525323 stkld1 coding upstream 717 16730789 ~ 16739097 (-)
endog endog coding upstream 403768 17133840 ~ 17135672 (-)
LOC110525108 NA coding upstream 406349 17136421 ~ 17137306 (-)
ntng2a LOC106585788 coding upstream 412275 17142347 ~ 17224680 (-)
LOC110525333 NA coding upstream 415174 17145246 ~ 17152447 (-)
G479662 NA non-coding downstream 9971 16694601 ~ 16697285 (-)
G479637 olfm1 non-coding downstream 62278 16637606 ~ 16644978 (-)
G479558 NA non-coding downstream 83852 16623186 ~ 16623404 (-)
G479496 NA non-coding downstream 180706 16525620 ~ 16526550 (-)
G479418 NA non-coding downstream 203340 16503697 ~ 16503916 (-)
G479757 NA non-coding upstream 15316 16745388 ~ 16745708 (-)
G479763 slc2a6 non-coding upstream 20715 16750787 ~ 16760603 (-)
G479815 LOC100194703 non-coding upstream 110444 16840516 ~ 16840739 (-)
G480444 NA non-coding upstream 238435 16968507 ~ 16968805 (-)
G479533 NA other downstream 113485 16589272 ~ 16593771 (-)
G478734 NA other downstream 823746 15881636 ~ 15883510 (-)
G478730 LOC106585767 other downstream 835458 15869799 ~ 15871798 (-)
G478643 NA other downstream 977673 15727490 ~ 15730279 (-)
git2a LOC106585671 other upstream 1327139 18056651 ~ 18084926 (-)
LOC110525370 LOC106585675 other upstream 1394025 18121017 ~ 18139654 (-)
G482323 NA other upstream 2227414 18957486 ~ 18963891 (-)
G482483 NA other upstream 2461060 19191132 ~ 19191457 (-)
G482658 NA other upstream 2580351 19310423 ~ 19310993 (-)

Expression

LOC110525322(LOC106585778) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110525322(LOC106585778) Expression in each Bioproject

Bar chart with 20 bars.
LOC110525322(LOC106585778) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network