LOC110525325 (LOC106585782)


Basic Information

Item Value
gene id LOC110525325
gene name LOC106585782
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16769390 ~ 16773568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605348.2
CGTTCAAAGAGTTCATCTTCTTGTTCATTCATTGGGTTACACTAAAGTCATGATTTATATAATTATGCAAGTAGCCTACACTCTAGTCCTCAAAAGCGATTGGTCGACCAGAAATAGGAGGATTGTCCCCTGTAGAGCGAATCCCTCATCGCCTGCCATCGACATAGCTCCCATCCGTGAGTTTCGTAAGGGTCTTGTGTAAGGCTGTTGTTACATAGCCTTCAATGGCTATTACATATATATGTAGTAGCTATCTACAGTGTTTCCAAAAGTCCGGGAAAATTGTCAGTCGCTCACGTCGCATGTGAAGATGTATCCAAAAAGAAAAAGTGCATTGGATAGTCAAATTATTTCGGCAGAAATTGCTTTAGGTCTTGTTCTGTGTACAGCATATCGGATCATTTCGAAGAACATTTTCAGTCAACGGGAGGAGAGTCAACCTGTTGACAGTGAAAAGTTTGAGCTAACAAGGTCACTAGTGTGTGTATGGCTTGCAAGCAACATAAAGTTCCTACTCATTAAATGCAACAGCAATCCAGTTTCACTGTCTGCACATTCAACATCCAGGCTGATTGCATTTCTGGCACTTCTACTGGATAGCTGCTACGGAATTAATTATCAGAGACTATATACTAACGAACGGCCTACAGTGGACATGGCCGTGTGTTCTTTCTTCATAGTGAGCAGTGTTGTCCTCTTCTTTTTGGACCACAGCCAGCTGCAGAGCAGAGTGGACTTGCGCATGATCTTCAGTGACTCTCAGAAGTTCTTCCTTCAGATGGACTTTTTTGCCACCTTTGTCTTTGGCCTCCTCTGGCTGGCCTTCCCCGATTGGCTCCTAGGATTCCAGCCCATTACAGGTTCTGAGGACATCTTCCATCTTCACCTCAGTAGAGCCTTTGGCGCCATGATGGTGGGTGACAGTTTTGTCTCTTTTACAACACAGAATTTCCAACCCAACAAAGAAAAGCCATCCGTGTTCATAAGCCGAGCAGTGGGCAGCTTGGTGCTGCTGGTGTTCCTGGTCCACTCTCAGCTGACCACCTCTGCCTGGGCCCCTGCCCAGATCTGGTTTGGCCTGGTGGGAGCCAGCCTCTGGACAGGAAACTCCATCTTAGGTTACCTCAGCTCTAAACAACAAAATATACTGTTAGCCCGCTTAAGTGAAGCTGATCACGTGAGCATGGTTAATCAAACCACAGCTGTTGCACAGAAAGCAGAGGCAGATTCTATGGGAACCTGGAGTGACTTCGAATGAGTGATTATTTATTGTTAAACCATTTCCATCCTATGTTGTTCAGTCTTATGATTTTCATACTTCACCATCAATGAGATGGTGATGGTCATTGCTGACAGAGGTGGAAAGAGACTCTTTGGAAATCTAAATGTctaaatatactgtactgtacatttgtAAATGTGTAACTCCTCTGAGAAGAGGTTAGAAGCCATCGGAGATTGTAAAAGACACTTGACCCTACCATTCCACTGTACAGAAGTGAATAGTAAGTATGCAGGCTCAGCCTTAGAAACATAATTATGAAATAACTTTTTAGGAACTATTGATGGGAAGCGTGGAGGTGTTGTAGCTGCACCCATAGATGTAACTGACATTGAAATTCTGTCAAGGAATAAAAGTGAAGTGAAATGTTA
>XM_036979469.1
CGTTCAAAGAGTTCATCTTCTTGTTCATTCATTGGGTTACACTAAAGTCATGATTTATATAATTATGCAAGTAGCCTACACTCTAGTCCTCAAAAGCGATTGGTCGACCAGAAATAGGAGGATTGTCCCCTGTAGAGCGAATCCCTCATCGCCTGCCATCGACATAGCTCCCATCCGTGAGTTTCGTAAGGGTCTTGTGTAAGGCTGTTGTTACATAGCCTTCAATGGCTATTACATATATATGTAGTAGCTATCTACAGTGTTTCCAAAAGTCCGGGAAAATTGTCAGTCGCTCACGTCGCATGTGAAGATGTATCCAAAAAGAAAAAGTGCATTGGATAGTCAAATTATTTCGGCAGAAATTGCTTTAGGTCTTGTTCTGTGTACAGCATATCGGATCATTTCGAAGAACATTTTCAGTCAACGGGAGGAGAGTCAACCTGTTGACAGTGAAAAGTTTGAGCTAACAAGGTCACTAGTGTGTGTATGGCTTGCAAGCAACATAAAGTTCCTACTCATTAAATGCAACAGCAATCCAGTTTCACTGTCTGCACATTCAACATCCAGGCTGATTGCATTTCTGGCACTTCTACTGGATAGCTGCTACGGAATTAATTATCAGAGACTATATACTAACGAACGGCCTACAGTGGACATGGCCGTGTGTTCTTTCTTCATAGTGAGCAGTGTTGTCCTCTTCTTTTTGGACCACAGCCAGCTGCAGAGCAGAGTGGACTTGCGCATGATCTTCAGTGACTCTCAGAAGTTCTTCCTTCAGATGGACTTTTTTGCCACCTTTGTCTTTGGCCTCCTCTGGCTGGCCTTCCCCGATTGGCTCCTAGGATTCCAGAATTTCCAACCCAACAAAGAAAAGCCATCCGTGTTCATAAGCCGAGCAGTGGGCAGCTTGGTGCTGCTGGTGTTCCTGGTCCACTCTCAGCTGACCACCTCTGCCTGGGCCCCTGCCCAGATCTGGTTTGGCCTGGTGGGAGCCAGCCTCTGGACAGGAAACTCCATCTTAGGTTACCTCAGCTCTAAACAACAAAATATACTGTTAGCCCGCTTAAGTGAAGCTGATCACGTGAGCATGGTTAATCAAACCACAGCTGTTGCACAGAAAGCAGAGGCAGATTCTATGGGAACCTGGAGTGACTTCGAATGAGTGATTATTTATTGTTAAACCATTTCCATCCTATGTTGTTCAGTCTTATGATTTTCATACTTCACCATCAATGAGATGGTGATGGTCATTGCTGACAGAGGTGGAAAGAGACTCTTTGGAAATCTAAATGTctaaatatactgtactgtacatttgtAAATGTGTAACTCCTCTGAGAAGAGGTTAGAAGCCATCGGAGATTGTAAAAGACACTTGACCCTACCATTCCACTGTACAGAAGTGAATAGTAAGTATGCAGGCTCAGCCTTAGAAACATAATTATGAAATAACTTTTTAGGAACTATTGATGGGAAGCGTGGAGGTGTTGTAGCTGCACCCATAGATGTAACTGACATTGAAATTCTGTCAAGGAATAAAAGTGAAGTGAAATGTTA
>XM_021605349.2
TAGGAGGATTGTCCCCTGTAGAGCGAATCCCTCATCGCCTGCCATCGACATAGCTCCCATCCGTGAGTTTCGTAAGGGTCTTGTGTAAGGCTGTTGTTACATAGCCTTCAATGGCTATTACATATATATGTAGTAGCTATCTACAGTGTTTCCAAAAGTCCGGGAAAATTGTCAGTCGCTCACGTCGCATGTGAAGATGTATCCAAAAAGAAAAAGTGCATTGGATAGTCAAATTATTTCGGCAGAAATTGCTTTAGGTCTTGTTCTGTGTACAGCATATCGGATCATTTCGAAGAACATTTTCAGTCAACGGGAGGAGAGTCAACCTGTTGACAGTGAAAAGTTTGAGCTAACAAGGTCACTAGTGTGTGTATGGCTTGCAAGCAACATAAAGTTCCTACTCATTAAATGCAACAGCAATCCAGTTTCACTGTCTGCACATTCAACATCCAGGCTGATTCGGCCTACAGTGGACATGGCCGTGTGTTCTTTCTTCATAGTGAGCAGTGTTGTCCTCTTCTTTTTGGACCACAGCCAGCTGCAGAGCAGAGTGGACTTGCGCATGATCTTCAGTGACTCTCAGAAGTTCTTCCTTCAGATGGACTTTTTTGCCACCTTTGTCTTTGGCCTCCTCTGGCTGGCCTTCCCCGATTGGCTCCTAGGATTCCAGCCCATTACAGGTTCTGAGGACATCTTCCATCTTCACCTCAGTAGAGCCTTTGGCGCCATGATGGTGGGTGACAGTTTTGTCTCTTTTACAACACAGAATTTCCAACCCAACAAAGAAAAGCCATCCGTGTTCATAAGCCGAGCAGTGGGCAGCTTGGTGCTGCTGGTGTTCCTGGTCCACTCTCAGCTGACCACCTCTGCCTGGGCCCCTGCCCAGATCTGGTTTGGCCTGGTGGGAGCCAGCCTCTGGACAGGAAACTCCATCTTAGGTTACCTCAGCTCTAAACAACAAAATATACTGTTAGCCCGCTTAAGTGAAGCTGATCACGTGAGCATGGTTAATCAAACCACAGCTGTTGCACAGAAAGCAGAGGCAGATTCTATGGGAACCTGGAGTGACTTCGAATGAGTGATTATTTATTGTTAAACCATTTCCATCCTATGTTGTTCAGTCTTATGATTTTCATACTTCACCATCAATGAGATGGTGATGGTCATTGCTGACAGAGGTGGAAAGAGACTCTTTGGAAATCTAAATGTctaaatatactgtactgtacatttgtAAATGTGTAACTCCTCTGAGAAGAGGTTAGAAGCCATCGGAGATTGTAAAAGACACTTGACCCTACCATTCCACTGTACAGAAGTGAATAGTAAGTATGCAGGCTCAGCCTTAGAAACATAATTATGAAATAACTTTTTAGGAACTATTGATGGGAAGCGTGGAGGTGTTGTAGCTGCACCCATAGATGTAACTGACATTGAAATTCTGTCAAGGAATAAAAGTGAAGTGAAATGTTA

Function

NR:

description
uncharacterized protein LOC110525325 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605348.2 False 1653 mRNA 0.44 7 16769390 16773568
XM_036979469.1 False 1557 mRNA 0.43 7 16769390 16773568
XM_021605349.2 True 1473 mRNA 0.44 6 16769504 16773568

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6 coding upstream 7067 16751007 ~ 16762323 (+)
LOC110525319 olfm1 coding upstream 115197 16637543 ~ 16654193 (+)
LOC118964846 NA coding upstream 594375 16168395 ~ 16175015 (+)
LOC110525313 LOC106585767 coding upstream 885600 15832500 ~ 15883790 (+)
LOC110525007 NA coding upstream 948300 15817450 ~ 15821090 (+)
fibcd1 LOC106585783 coding downstream 73178 16846746 ~ 16966187 (+)
traf1 LOC106585784 coding downstream 197266 16970834 ~ 16982251 (+)
phf19 LOC106585785 coding downstream 210248 16983816 ~ 17003233 (+)
dab2ipa LOC106585786 coding downstream 242528 17016096 ~ 17126012 (+)
LOC118964847 NA coding downstream 353387 17126955 ~ 17131300 (+)
G479678 NA non-coding upstream 38598 16730340 ~ 16730792 (+)
G479609 NA non-coding upstream 72103 16694451 ~ 16697287 (+)
G479564 NA non-coding upstream 117467 16629043 ~ 16651923 (+)
G479562 NA non-coding upstream 141459 16627506 ~ 16627931 (+)
G479548 NA non-coding upstream 153895 16615091 ~ 16615495 (+)
G479841 NA non-coding downstream 87777 16861345 ~ 16863923 (+)
G479896 NA non-coding downstream 192798 16966366 ~ 16966702 (+)
G479897 NA non-coding downstream 193172 16966740 ~ 16966978 (+)
G479823 NA non-coding downstream 196001 16969569 ~ 16970392 (+)
G479966 NA non-coding downstream 324396 17097964 ~ 17098959 (+)
G479239 NA other upstream 409639 16359416 ~ 16359751 (+)
G476248 NA other upstream 2753826 13997084 ~ 14015564 (+)
G476234 NA other upstream 2784131 13984840 ~ 13985259 (+)
G475692 NA other upstream 3455421 13313679 ~ 13313969 (+)
G474949 NA other upstream 4056092 12712306 ~ 12713298 (+)
G480128 NA other downstream 547206 17320774 ~ 17321165 (+)
G480219 NA other downstream 671185 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 944302 17717870 ~ 17718201 (+)

Expression


Co-expression Network