fibcd1 (LOC106585783)


Basic Information

Item Value
gene id fibcd1
gene name LOC106585783
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16846746 ~ 16966187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979470.1
AGACAGGCATTAttgtaacacacatacacatgcacgcatgcaaagtcgcgcgcgcgcgcacacacaaccacacacacacacacacacacagcctctctcacagttgcctagttaaataaatgtcaaaaaaataaaaaaaatacacgcATACACGCGCGCGCACTCGCACGACGAAGGGGAATCACTGAAGCTTGGATTTCACGTCGAGGCGCTCTTGCCCAATGCAATATGTTGCTAATCTGACTGCGCGTTGAATCATATCAGAGAGCCGCTTCATGTTTATCAACGTCAACCAGGGAAACCAGAGGCGGTTTTATCTCTTGCCCGAGCTCTTTCACTTTTTAACAAGGACGTACATAGCCCACGCGTAAAACCTCGACAGGACACGTGTAATTTTGAGTCAGAACGGAGGAAATAGAAGCAGGTTTTCTTCTAGGTTCTGAATAACGCGGGTGAAGTTTTGATTCATTAGAATCTGCAACGCATTGAACGCTTACTGTcaatgtgcatgtgtgttttttaGTAACACGAAGGAACGTTATAGCAATTTCCTAACTGCGAAAATTCAAAGCAACTATTCTTTGCAAGGGGTCCTACAAATTTTCAGAGAATGGTAAATGATCGATGGAAAATCATGAACAGTGTTTCAGAACTCGAAGATGGACATCAGCATAAATCTCAGaGGATGGGCTGTAGCTACTTCCTGTGCACCATCATGCTCTTCGTGGCCGTCCTCCTGGCCGTGACGGCAACGGGTACCATCCTCTTCATGAACCACTACCAAGCCCCGCCCCCCGGCACAAACAACGGCCCCCCACTCATCTCCACCAACCAGGATGAAGGCAACGCCCTGGTGACAGTCGAGCGGGGCGACGGCTCACGCATCAACATTTTCATCGACCCCAACTGCCCCGACTACAACAACAACTTCCTGCGGCTGGAGGGTGTGCAGACTTCACTGCTCCACTCGCTGACCGACCACGACACGAGCCTAAAGTCAGTGAAGGGCCAGGACCGAGCCTTGCTGGTGAAGTTGGCTGAGGAGGTGGCCAAGCTCTCGGCCCATGCCAGCCAGCTCAGGTTGGAGTACGAATCTCTAAGGCGAGGCCAGGGGAACCTGGGACAAGAGCTCAACACTCTGCAAACGGAGCAAGGCCGACTTATCCAGCTGCTGTCTGAGAGCCAGATCAACATGGTGAAGGTGATGAACTCAGTGAACGATGCTCTCAACTCCATGCAGAAGGAGACAGGGAACCTGAAGAGCAAGTTCAAGGCAGACCTCCAGAGAGCACCTGTTCGCAGTGCCCGGCCCAAAGGCTGCTCCAATGGCTCCAGACCTCGGGACTGCAGCGATATCTACGCAAGTGGTCAGCGGGAGGACGGGATCTACTCTGTCTTTCCCATGCACTACCCTGCTGGTTTCCAGGTCTTCTGTGACATGACAACGGACGGAGGAGGATGGACGGTCATTCAGCGCAGAGAGGACGGCGCAGTGAACTTCTTCCGAGCATGGGACGCATACCGCGACGGCTTCGGCAAGATCACAGGGGAGCACTGGCTTGGTTTGAAGAGGATGCATGCCTTGACCATCCAAGCCAACTACGAGCTGCGAATTGACCTGGAGGACTTTGAGAACAGCACAGCTTTCGCCCAGTACGGAGCCTTTGGAGTGGGACTGTTCTCTGTTGACCCGGATGAGGATGGCTACCCGCTGACTATTGCTGACTACTCAGGCACTGCAGGTGACTCGATGCTCAAACACAATGGGATGAAATTCACCACCAAGGATCAAGATAACGATCACTCAGAGAACAACTGTGCCTCCTTCTACCACGGCGCCTGGTGGTACCGCAACTGCCACACGTCCAACCTGAACGGACAATACCTGCGTGGGCAGCACACCTCCTACGCCGACGGCATCGAGTGGTCCTCCTGGACGGGTTGGCAGTACTCCCTCAAATTCGCAGAGATGAAGATTAGGGCCACGAGAGAGGAGAACAAATGAGATGGAAACAATACTACGTGAAACCATAGACTAATGGACTTAGGTGTTTTTAAAGACACTCAACCTGCTGAGAATCAGAATGAGGACTATGCTCGTACTGTAACCCCTGTCCAAAAACATTCTAATCCCCTCTTGTGGTGTTGTGTTGAAGCCTCCAAGGTTTTGTAACCTTTTGCAATCTCTCGCTGATCTGATCATGTTTGTAATAATTATGTCAAAATAATGCAGGTAATGTCAGAACTACAGTATCGTTGTGGAATTTTGAAATATGAAATGTTAGGATTTCTCTCATTCCCTTAAATTAATAGAATTTCTTACAGTTTATTTTGGCTGTCCCTGTTACTTGTATATACACTTATCTTTGCATCTGACAGCATCATGAGTTCTCCTAAGTGTTACGCACTGGTTTCGGTGAACCAAGTTTGCTTGATGAGTAACCTTGCTTGAGACCTGGAGACTTGTGTTAGCTCCCCAAGCTAATGCTTAGTCTTTAGCTCAGCGGGCTATGACCATATTGTGGCGCACAGGAAACGTGGGTTTTAACCCCGTCAGTTACATGTGCTCCTGGTTGACCCCTAGCTCCTGGTTGACCCCTAGCTCATTGTTGACCACTAGCTCCTGGTTAACCCCTAGCTCCTGGTTTACCCCTTGCTCCTGGTTGACCCCTAGCTCCTGGTTGACCACTAGCTCCTGGTTAATCCCTAGCTCCTGGTTGACCCGTAGCTCCTGGTTGACCCCTAGCTCCTGGTTGACCCCTAGCTCCTGGTTGACCTCTAGCTCCAGGTTGACCCATAGCTCCTGGTTAACCCCTAGATTCTGATTGACCCCTAGCTTCTGATTGACCCCTAGCTACTGGTTAACCTCTAGCTAATGGTTGACCCCTAGCTCCTGGTTAAACCCTAGACATACCTTGTGACCATGTGTCAGTCCTGTGCCCAGTAAGACACATTCATGACAAAGACATTATATCCGTCAGACAGGGTTTTTCAAGCCAATCACTTCATAAATGGCATCCTTGTTTTTTATGTAACATTTTCAAAATACATTGACCCCACAAGACTGGCTTTGAGTGGCATGCGTGTGTGACCTGTGAcagtggtagtagagagaatgaagagCATAGGTGAGGGGGATCGGCCAGCGGGCTGGGCCAATTATGATCAAAGGCCTGTATCTGTGTAGACTTCCAGTTGGTGGTGGAAACCTTCTCAGACAGTAGCTACTAGCCTATAAGTTCAGCTCATTGTCATGTGGAGGCTTCCCTGTCTCTCAATTTCTCTCCCTTACTTTACAATCACTGAGAGACAAGTCTGTTCACTGATATGCTGTCTTGACTCAACTCAAATCAGTTGTTTCAGTATACTGGGttttggctgcatttacacaggcagctcaattcattaatcagatcagctctgaaaaatatttgatgtgaaagatctgatgtgattggtcaaaagaccaaggagtgtaaaaaaatatcagaatgtGGCTatctgtgtaaacgcagccttctAGTCTCAGTACTCTTCAGTGATGCGTCTGTACAGGAGGTGGTTAATAAGTAAGGCAAATCGTGTTCTTTACTCAGTACCAAATATTGAGATTCCCTTACGGGCAcccacaatagaaaaaaaaacatatccaaAACGCATTATTTGTATCATAATACAATGACTTCTGGCAACTCATTCCCCACAAAAAGCAGCCATTTGGCCAGGCATTGAATGGCATTGTGTCACTAGTACAGTAGGGCTGTACAGTGTGTCTTTCTCCTTCTTTACAGTGACGTGACATTGCTTTAGATGCCTTTGTGGCAGCAGACAATTGTACATCTGTGTGGTGCCTCCTCAGCTGTAAAGTCAGAATGACAACATGTCGGGTAGGCTAGCGGCAGGTAGGTAGCCTATAATACTGTTGAGCAAGTTTCCTGAAGGTAACCGAAGCCTAGTTGAAAAATAAGTTGTTGTGatcttgaacaaggcacttaaccctaattgcttctgtaagttgctctggataatagtgtctgctaaattactcaaatgcaAAAATATGTTGTTACAAAGTTGTAGTGGCACATTGAGGCTCACAACTTGGAGTCTTGAAATGACATTATGTGGTAGTTATGTGTTTACTGGGAATGTGGTGGTCTTCTATGAATTCTGTATTATGTTGCAGCCATTGTTCATTTACTGTAATCATGTACTTATTTATTTCCTTATTTAACCTCTGTTTGTTTCGTCATGATGTGGCTAATGTTTCCATTTAAAGGTTGAGTGAAAGCATATCTTATTAACCTCACCAATATGTGATAGGTAGAGAGATCTGTCTAAGTTTGGCTGAAGCTCAaaagatggaatccgcagtaAGGGAAACTGCGCAACTGTCTGCCCAACGGCCGTAGTTATTGTTTTGTTCATGAAGCAGGGCAGAGAAGTccgtgggggaaaaaaacagtgtttgttgtttacagtaacttctttgttgttgtaataccaCAGTCTAACGTGGCAGTTTAACCAATAAGGATTCCAGCTTGAAGGTGAGATTTTTATGTTGATATCATTATGAGTCTGTTTATAATGGTCTGCTGTTGTTGTAAAAGATCCCTCAGTCAAATATGAGCACTTTAAAAGCAGATACGTTACGattgacatacagtataattTGTATGTTTTTGTCTCAAAAGGAATCAAAAAAAAGAAACCATTGTTTAGATGTGTATAGTTGTCTCTTCACAGCATTTGGAAATAAAGGTTTAAAAGGT

Function

NR:

description
PREDICTED: fibrinogen C domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979470.1 True 4775 mRNA 0.46 8 16846746 16966187
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110525325 LOC106585782 coding upstream 73178 16769390 ~ 16773568 (+)
slc2a6 slc2a6 coding upstream 84423 16751007 ~ 16762323 (+)
LOC110525319 olfm1 coding upstream 192553 16637543 ~ 16654193 (+)
LOC118964846 NA coding upstream 671731 16168395 ~ 16175015 (+)
LOC110525313 LOC106585767 coding upstream 962956 15832500 ~ 15883790 (+)
traf1 LOC106585784 coding downstream 4647 16970834 ~ 16982251 (+)
phf19 LOC106585785 coding downstream 17629 16983816 ~ 17003233 (+)
dab2ipa LOC106585786 coding downstream 49909 17016096 ~ 17126012 (+)
LOC118964847 NA coding downstream 160768 17126955 ~ 17131300 (+)
med27 med27 coding downstream 259378 17225565 ~ 17318854 (+)
G479678 NA non-coding upstream 115954 16730340 ~ 16730792 (+)
G479609 NA non-coding upstream 149459 16694451 ~ 16697287 (+)
G479564 NA non-coding upstream 194823 16629043 ~ 16651923 (+)
G479562 NA non-coding upstream 218815 16627506 ~ 16627931 (+)
G479548 NA non-coding upstream 231251 16615091 ~ 16615495 (+)
G479896 NA non-coding downstream 179 16966366 ~ 16966702 (+)
G479897 NA non-coding downstream 553 16966740 ~ 16966978 (+)
G479823 NA non-coding downstream 3382 16969569 ~ 16970392 (+)
G479966 NA non-coding downstream 131777 17097964 ~ 17098959 (+)
G480058 NA non-coding downstream 352863 17319050 ~ 17319198 (+)
G479239 NA other upstream 486995 16359416 ~ 16359751 (+)
G476248 NA other upstream 2831182 13997084 ~ 14015564 (+)
G476234 NA other upstream 2861487 13984840 ~ 13985259 (+)
G475692 NA other upstream 3532777 13313679 ~ 13313969 (+)
G474949 NA other upstream 4133448 12712306 ~ 12713298 (+)
G480128 NA other downstream 354587 17320774 ~ 17321165 (+)
G480219 NA other downstream 478566 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 751683 17717870 ~ 17718201 (+)

Expression

fibcd1(LOC106585783) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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fibcd1(LOC106585783) Expression in each Bioproject

Bar chart with 16 bars.
fibcd1(LOC106585783) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network