phf19 (LOC106585785)


Basic Information

Item Value
gene id phf19
gene name LOC106585785
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 16983816 ~ 17003233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605355.2
TTGATTCGCGGGAAAAAATGAAAAATGGCGACTTGCATAGTTTGAACTTTAGCGCCTGTACACATATTGCAAGAATCGACAACTCCTAGCGAATGGAACGTTACTCAACAGCAGCGACATTATTTCGAGCATTGACCCTGGATTGGAAGTTAACCAAGGCGGAAGAGTAGTAGTGTGGACAGCCCAGCTGCAGCATGTTGCAGTCAGCCTACAGAGATAACTTCTGCAGTGTGGAGCCAGATGAGGTGCTGGAGGCCAAGCATTTACcccagaagagggagagagggcggagCTTCACAGACATGGAAAGCAGCGTGACCGTGGGCCAGTATGTACTGTGCCGCTGGTCTGATGGCCTATACTACCTGGGGAAGATCCAGAGAGTGAGTACCTCCAAGCAGAGCTGCTTTGTCACTTTTGAAGATAATTCAAAATTCTGGGTTCTCTGGAAAGACATCCAACATGCTGGAGTTCCGGGGGAGGAGCCCAAATGCTCAGTCTGTTCCGAAATGGTGCTGGTATCCGACAATGAGATCCTGCTATGTGGGAAATGTGGAATAGGTTACCACCAGCAGTGCCACATGCCACAGGTGGAGAGCTCAATGGTTTTGTCACCATGGTTTTGCAGGAGGTGCATCTTTGTTTTAGCTGTGCGGAAAGGGGGAGCTCTCAAAAAGGGGCCCATAGCAAAAGCACTGCAGGCCATGAAGCAGGTGCTTACCTACAGCCCAGAAGAGCTGGAATGGGATTCCCAGCACCACACAAATCACCAACAGTGTTATTGCTACTGTGGAGGACCTGGAGAgTGGTACTTGAAGATGCTGCAGTGTTTTCGGTGTGAACAGTGGTTCCATGAGGCCTGTATCCAGTGCCTACAGGAGTCCATGATGTTTGGAGATAGGTTTTACTTGTTCATCTGTTCCATGTGTAATAAAGGAGTAGAGTACATCAAGAGACTGGCCCTCCGATGGGTGGACGTGGTGCACTTGGCACTTTACAACCTGGGAGTCCAGAGTAAGAAGAAGTACTTTGAGCTGGAGGAGATCCTCAACTTTGTCAGCAACAACTGGGACCATTTCCAGTTGGGCAAGCTCTCCAATACTCCTCCAACAGAAAGAGGCCAATATCTCCTTGATGCTCTGAACAACTACAAGAGCAAGTTTCTCTGTGGGAAGGAGATCAAGAAGAGGAAATGCATCTTCCGCCTGAGGACCCGCGTTCCCCCCAACCCTCCCTCTAAACTGTTTCCTGAGAGGGCTCAGAACGAGGGATGGAGAGGACGAAAGAAAGGCACAGGCAGGAACAGCTCTCTCCCtgcagagaagaggaggaagagaagatcAAAATGGCTGCTGGAGGACGCCATCCCCAATAATGACCTGACCTCCACCTGGAGCACCAACCATCACATGGCCAACATCTTTGACTTCACCTTGGACGAGTTACAAAGTCTCAAAAGCACCAGCTCAGGACGGACCTTCAGTCTGGACCTGGACTCCACAGACGCGGCTAGTACCACCGGATCTGCTACCACCAGTGTCTCCTATGACCTCAGGAAGAATGTTGGCAGCCGTAAGAGGAAGCTGCCCACCTCAAACTACACGGTGCTGGCCACTAAGAAGGAGGTGGTGGAGAACGAGCTGAGCCCTATGGAGCAGAGCCTGCCGGGAGAGGAGACGGCCTCCGTGATGCTGGACAACGCCATCGACAGCCACACCTTCGACAGCATCAGTGAGGACGACTCATCCCTCTCCCACCTCAAGTCCTCCATCACCAACTACTTTGGGGCGGCGGGGCGGCTCACCTGTGGAGAGAAGTACCAGGTGCTGGCCCGCCGGGTCACTCTGGAGGGGAAGGTGCAGTATCTGGTGGAGTGGGAGGGCACCACGCCCTACTGACCTGGCCAACCAGACAGGCTGTCTTCAGTTAGGTGTTGCAGAGAAGGGGGGAATAAACGGCAAGATCAGCCTAGCAAGGCCTACCTAGTTGTACTCATttaattgtttcatgttgcttTCTCTTGCGCTACAGTACTATTTCAGTATATATGACAAGTAAAAATGGTTGTTCTCTTCCACCATAGCTAAGGTTTTTATTAGTTAATTTGAAATTCAACCGGAATGTATTGAACAGAAACGTAAAGATTGAgtacgttttttttttatagatacATTGTCTGTTTGGTAGTGTCCTCAATAATTTTCAACAGTAACACAGCCTGAAAAATAGTCCCATGGGGCACAGATGTAAATTCACCGGCTATTCCACGTTATTTTGTTGATTCAACCAATGTGTGCCTGTTGGGGTTTGCCTTGGTCTTAACCGGATGATAGTTTGAGTAGAAGATTTGTGATGGTACTGTAAAGGTAACATGAGATATGGCCCAGGGGTACAAGAAATAACAATACCACTGATTCTAAAGGATGGCAGCAAAACTGATGAAAGAGCACTGCTAAAATGGTCTGTCAGTGTCCCTAAATTCAATTCAGACAACTTCCAATAATATTCTGCTCTACTAATAGTTTTTcagtgttttttaaaaatgttttaccttatGTTTTGAATAGTTTCTCTTAACAGCAATATGCCATATCCAAGCAACATTTAATATGCCATATCCAAGCAACATTTAACTTGTAGCAAGTTATACCTTTGTCATTGTTGTGCCTCTCCACTGATCAATGAAACCGCAGTTTAACAGCTTTATCTACGCAGTACTGTAATGCCAAGTCTAAAAGCTGAGTAACAAACACATGTTTTTATGAATTATCACTTAACAGTCGGTTTATACTTGGTCCTTTAATTTTCAAATGTGTTTAGAGAGAGTTTTTCCGGATGGTTAGGGGGACAAGAGACCAAAGCAAATACTACAAGCATTTCTGATAGTGTTCCTGGTTTTCCTTTTATCTCTAGTGGTTTATGCTGACATAGGTAGTTTGGCTTACGTAGATGCAAAACTGTTGTATTTAATGGTAATTCAAGGTAGAGGATGGAGAACTTATTTTAACATAGTACTTTTAGACACTGTAAGATCTTTTTTGACATTTGAAATATAGAAAGTTAGAATGAGAATATTCCTTTAGTCATGGACTTTAAGGGGGAGTCTTGGTCTATGCTCTAACAATATCCAAAGATGACTTTATATATTACTCTCCCACCTATAGATATTTCTGTTTCCTCAAGACATGTATTTGTTTTGTTCCAGACTTGGATATCTTTTCGCTGACAGTGAAACCTGGGGCTGTGTACATTAGGGGGCactcagtggggggggggggggggaagaattTAACGGAAAACAAAAATGAGCATTTAGGCCTATTTATTTGACACGCCCAGGTAATCCCTCCGTTTCATTTAGATTTCTTCGGATCGTGCGTAATGAACAGGATACAGAATCTTTCGACCTTGATAAATATGATTCGATATCAATACGTCAGTCATGAAAGATAAATGACGCTTTCCTATTAACAGTTCTGTTAATGTACATCACCCTCTATACGTCATTGCACTATTGACACATCTTAAACTATGcaagtatgtttttttttaaattgatgttACTAAATAaccaaatattatttacaatatAGTTTTAATTGATTATTCTGTAAATTTGTGATCAGAAGTCACATGCTATATATGCGTTATATTATTAATAAGCAAAGTTTTAAGCTACTTGTAATATGTTTCCCCTTTAGCATTTTGCAACTGTTTATGCACTTACTTTCCTTCAAATTACAGTATGACTGTATTCACTCAAACAGTTTATATTATGAGTAGATTCATATCTATCCTCTGGAGTTTCCATTTTATGGATGATTCTTGAATAGTGACACTTCAATGGTAAACTGTGTGCAACATAAAAGTTTGACTTTAGTTGtattttaaatcaaataaaatgcatCTTTAAACATGAATGACTGTATAATAGTTGTTTTGCCATGTTACATGCCCAGAGCTGTGTATATAGAGAACTTCCTGTGTACTGTACATTTACCCCTATTTCCTATGCTTGTTAGAAATGTTAACTGTTACATCTCTCAGCGGGCATTATGCATCCTTATTTGTCATTCATTAAACTTTTATTTGGTCTTTCGAA

Function

NR:

description
PHD finger protein 19-like

GO: NA

KEGG:

id description
K11486 PHF19, PCL3; PHD finger protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605355.2 True 4102 mRNA 0.43 15 16983816 17003233

Neighbor

gene id symbol gene type direction distance location
traf1 LOC106585784 coding upstream 1565 16970834 ~ 16982251 (+)
fibcd1 LOC106585783 coding upstream 17629 16846746 ~ 16966187 (+)
LOC110525325 LOC106585782 coding upstream 210248 16769390 ~ 16773568 (+)
slc2a6 slc2a6 coding upstream 221493 16751007 ~ 16762323 (+)
LOC110525319 olfm1 coding upstream 329623 16637543 ~ 16654193 (+)
dab2ipa LOC106585786 coding downstream 12863 17016096 ~ 17126012 (+)
LOC118964847 NA coding downstream 123722 17126955 ~ 17131300 (+)
med27 med27 coding downstream 222332 17225565 ~ 17318854 (+)
LOC110525335 LOC106585645 coding downstream 357519 17360752 ~ 17412856 (+)
LOC110525341 LOC106585648 coding downstream 485355 17488588 ~ 17496137 (+)
G479823 NA non-coding upstream 13424 16969569 ~ 16970392 (+)
G479897 NA non-coding upstream 16838 16966740 ~ 16966978 (+)
G479896 NA non-coding upstream 17114 16966366 ~ 16966702 (+)
G479841 NA non-coding upstream 119893 16861345 ~ 16863923 (+)
G479678 NA non-coding upstream 253024 16730340 ~ 16730792 (+)
G479966 NA non-coding downstream 94731 17097964 ~ 17098959 (+)
G480058 NA non-coding downstream 315817 17319050 ~ 17319198 (+)
G480126 NA non-coding downstream 316802 17320035 ~ 17320254 (+)
G480134 NA non-coding downstream 320472 17323705 ~ 17323942 (+)
G480138 NA non-coding downstream 325285 17328518 ~ 17328718 (+)
G479239 NA other upstream 624065 16359416 ~ 16359751 (+)
G476248 NA other upstream 2968252 13997084 ~ 14015564 (+)
G476234 NA other upstream 2998557 13984840 ~ 13985259 (+)
G475692 NA other upstream 3669847 13313679 ~ 13313969 (+)
G480128 NA other downstream 317541 17320774 ~ 17321165 (+)
G480219 NA other downstream 441520 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 714637 17717870 ~ 17718201 (+)
LOC110525363 LOC106585667 other downstream 911527 17914750 ~ 17980989 (+)

Expression


Co-expression Network