LOC110525108


Basic Information

Item Value
gene id LOC110525108
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17136421 ~ 17137306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605055.2
AAACAAGCGTTTTAATGAATACTTTcaagtgatatcctctgggtcCACATTGTTAATTTtgttgtatatgtctgttacCCAAAATAATTCCAATTAAATTCAAGAAAGGATTCGAAAAGAGGCCCACTTCCTGTTTTGtctggatgtggacatgaagttttACCAGCGCTGGGAGGCTGAGGTGCTCAGCCAGCTTGTAGCTGCAGTTCACCTATCTTACTACTATGAGAGCTGGGACAAGTTCCCCTACGAATGCAGACCTGCCTCATTATCCTTTGTGCCCCTGAATGAGGGGGACTTCTACTATGCCAGAGCAGTGTTTGGAGGGACTGTGGAGGAGGTCCACAAGCTGACTAGGACATGCCAGGAGCATCTGGACAGAGACAGGGTTAATGTTATAGAGGCAGCGTGGCAAGAGGCGAAACATCTCAACTGCTACCTTATCTACAACAAACCCACCCGGCTGCTCTCCCCTGAGTACATATAAGGAGTcatgatgcacctgagatcaaggTCATAAAGCTGGCCTCTGTCATTAAGAATAACGTAGAAATACGACAATGTAAAAATGTAGAGGGTCAATAACCTCAGTTTCAGATGAAAAACAAAAACGTGAAATACAAATTATTTTAAACAGAGGTTGATCTGCTTTGCTCTTATACTCAATATTATTAGGAACTTTGTTTTGTAAGTTCGCTTTTTTCATTCATATTTTGTTGTATTAAGGCCACAAAAGACAACAGTCAGAAATGTTATAATGACTGAATTGATTAATTAAAGATGATCTACCACCACCAATGTATTTTGTCAAACTGAATGCGTTGGTCACATGTTGTTGGTATAGTCAGAGCCATACAATTGTACAGTGCTTTCCgaatgtattcat

Function

NR:

description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605055.2 True 886 mRNA 0.41 1 17136421 17137306
Loading

Neighbor

gene id symbol gene type direction distance location
endog endog coding downstream 749 17133840 ~ 17135672 (-)
LOC110525323 stkld1 coding downstream 397324 16730789 ~ 16739097 (-)
LOC110525322 LOC106585778 coding downstream 406349 16707256 ~ 16730072 (-)
LOC110525321 cssa24h9orf116 coding downstream 442016 16685793 ~ 16694405 (-)
LOC110525318 rxra coding downstream 562272 16538121 ~ 16574149 (-)
ntng2a LOC106585788 coding upstream 5041 17142347 ~ 17224680 (-)
LOC110525333 NA coding upstream 7940 17145246 ~ 17152447 (-)
LOC110525337 NA coding upstream 279923 17417229 ~ 17424019 (-)
ccdc180 ccdc180 coding upstream 295775 17433081 ~ 17443676 (-)
card9 LOC106585631 coding upstream 308865 17446171 ~ 17451908 (-)
G480460 LOC106585785 non-coding downstream 143716 16988827 ~ 16992705 (-)
G480449 LOC106585784 non-coding downstream 153892 16978949 ~ 16982529 (-)
G480445 NA non-coding downstream 167074 16968916 ~ 16969347 (-)
G480444 NA non-coding downstream 167616 16968507 ~ 16968805 (-)
G479815 LOC100194703 non-coding downstream 295682 16840516 ~ 16840739 (-)
G480565 LOC106585788 non-coding upstream 5085 17142391 ~ 17171981 (-)
G480618 med27 non-coding upstream 88303 17225609 ~ 17270021 (-)
G480626 NA non-coding upstream 125946 17263252 ~ 17301553 (-)
G480685 NA non-coding upstream 186279 17323585 ~ 17323872 (-)
G480687 NA non-coding upstream 188723 17326029 ~ 17326311 (-)
G479533 NA other downstream 542650 16589272 ~ 16593771 (-)
G478734 NA other downstream 1252911 15881636 ~ 15883510 (-)
G478730 LOC106585767 other downstream 1264623 15869799 ~ 15871798 (-)
G478643 NA other downstream 1406838 15727490 ~ 15730279 (-)
git2a LOC106585671 other upstream 919905 18056651 ~ 18084926 (-)
LOC110525370 LOC106585675 other upstream 986791 18121017 ~ 18139654 (-)
G482323 NA other upstream 1820180 18957486 ~ 18963891 (-)
G482483 NA other upstream 2053826 19191132 ~ 19191457 (-)
G482658 NA other upstream 2173117 19310423 ~ 19310993 (-)

Expression

LOC110525108 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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LOC110525108 Expression in each Bioproject

Bar chart with 8 bars.
LOC110525108 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Co-expression Network