med27 (med27)


Basic Information

Item Value
gene id med27
gene name med27
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17225565 ~ 17318854 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605363.2
CAAATCAATGACGTTGTTTATGCGACGTACAGTCCCAGCGTGTGGAAAAAATGGCGGACGCAATGAACGTCGGTGTGAATTTAGAAGCATTTTCTCAAGCAATAAATGCTATTCAGGCACTTCGTTCGAGTGTAACAAGGGTTTTTGACTCTCTGAAAGATGGGATGAAAAACAAAGAAACCCTTGAAGGACGCGAAAAGGTTTTTATTACCGAGTTTCAAGATAACCTGCAGTCTGTGAATCGCGACTTGAATGAATTGGAACGCCTCAGTACGCTGGTTGGCAGACCTTCAGAGAGTCATCCCCTTCACAACAGTGGCCTGCTGAGTCTGGACCCAGTTCAGGACAAGACTCCGCTGTACAGTCAGCTCCTTCAGGCTTACAAGTGGTCTAACAAGTTGCAGTACCATGCTGGCTTGGCGTCCAGTCTTCTTAACCAGCAGTCATTGAAGCGCTCAGCTAACCAAATGGGGGCATCTGCCAAGAGAAGACCCAAAGTCCAGCCCAGTACCCTGGTTCTGCCGCCACAGTATGTGGACGACGTGATATCTAGGATCGGCAGGATGTTTCCAGACATGTCGATTGAACTCTTCCGACCCAACGGGACGTCAGCAGTACTTCTGGTGACGTTGGGGAAGGTGCTGAAAGCCATCGTGGTGATGAGAAGCTTGTTCATAGACCGGACCATCGTGAGGGGATTCAGCGAGAATGTGTATTCCGAGGATGGCAAGGTTACGGATCATGCCACCACTGCTCTGCTGCACTACCAACTTCCACAAATGCCCGACGTGGTGGTACGGTCCTTCATGACCTGGCTAAGAAGCTACATCAAGCTGTTCCAGACCCCTTGTCAGCGCTGTGGAAAGTTTCTGCAAGAGGGACTTCCCCCGACCTGGAGAGACTTTCGTACCCTGGAGGCCTTCCACGACACGTGCAGGCAATGAGGAAATGGTGGGGACAGGTTCCATTggaaactgctctgacagctcatCTCATCATAAGACGAGAGCATGGCAAGACTTCACCTTCTCTTCAACCTCTCTATGTAGAGCAACAACCCCGGGATATATAGACTATCATGCCTGGTAgtccacttcctggttgaatAGGCATCAGGTAGCCGACTGGGATGAAGAGAGGGCTCCAGTACGTAGGGGGAATTCCAGTTTACAGACGTCAACATCCAAATTAAAATGCCAAGACTGCCACCGTTGACTCTTCCATCATTAACATGACATGAATGTTGTTTAGGTCTGTaagtccccctctcccccactgtGTATGATGATGTCATATTAATGAGTCTACCTTTAACCTAATCTCACACAGCTGACCAAATGTTTGCCTTATAGAGAATTGTTCATTGCTCCTACTCCAGTCCCCTGGTTGTGCGGGAACCTTTTTTTCTGTTCCACACAACTCTCCAAATAACAAAAGAAAAAGTTGTTTTGCATCAAAGGCTGAGCGAACATATTCATGCCCCAAATCTTGTGCCGTTTTTTAACATTGTGTTGTAATTGGTCACTTTTATACAAGAGCTGGGTTTAATATTTCTTGATCTATGCTGGATATGTGGAGGGAAAAGTATTTTTTGTGAGGTGGTTGTTAAAAAGTCAACTTCAAAAAGTAGGTCATGACCCTTATGTATTTAGATGGCAAGCGAAGGGAATTGCTAATTCTGTACAGATGTAATATCTTAATTTTATCACCCTATTgtaggagaactttcctgcaatgcaggaaatgtttaACTTGTAGtctatttgaggttttaaaagtttgtaatttccatttaGTAGtttgacttgattttcccttacaaaaaaatgtatcaacccctacataaAATGTCCataaattataatccacataataatttcagtttcctgttgctgcaggattattttcttgctgtaccaaactggctcaaatgaagatcctacatctgtagaattAGGCGCCTGCCTTTTTGTACATTTTCAAAATAGTCTTTTTTTTATAACCATTGTCTAAATAAAGTACAGAATTGTTTTAA
>XM_021605362.2
TCAATGACGTTGTTTATGCGACGTACAGTCCCAGCGTGTGGAAAAAATGGCGGACGCAATGAACGTCGGTGTGAATTTAGAAGCATTTTCTCAAGCAATAAATGCTATTCAGGCACTTCGTTCGAGTGTAACAAGGGTTTTTGACTCTCTGAAAGATGGGATGAAAAACAAAGAAACCCTTGAAGGACGCGAAAAGGTTTTTATTACCGAGTTTCAAGATAACCTGCAGTCTGTGAATCGCGACTTGAATGAATTGGAACGCCTCAGTACGCTGGTTGGCAGACCTTCAGAGAGTCATCCCCTTCACAACAGTGGCCTGCTGAGTCTGGACCCAGTTCAGGACAAGACTCCGCTGTACAGTCAGCTCCTTCAGGCTTACAAGTGGTCTAACAAGTTGCAGTACCATGCTGGCTTGGCGTCCAGTCTTCTTAACCAGCAGTCATTGAAGCGCTCAGCTAACCAAATGGGGGCATCTGCCAAGAGAAGACCCAAAGTCCAGCCCAGTACCCTGGTTCTGCCGCCACAGTATGTGGACGACGTGATATCTAGGATCGGCAGGATGTTTCCAGACATGTCGATTGAACTCTTCCGACCCAACGGGACGTCAGCAGTACTTCTGGTGACGTTGGGGAAGGTGCTGAAAGCCATCGTGGTGATGAGAAGCTTGTTCATAGACCGGACCATCGTGAGGGGATTCAGCGAGAATGTGTATTCCGAGGATGGCAAGCTGGATATCTGGTCAAAGTCAAACTATCAGGTATTTCAGAAGGTTACGGATCATGCCACCACTGCTCTGCTGCACTACCAACTTCCACAAATGCCCGACGTGGTGGTACGGTCCTTCATGACCTGGCTAAGAAGCTACATCAAGCTGTTCCAGACCCCTTGTCAGCGCTGTGGAAAGTTTCTGCAAGAGGGACTTCCCCCGACCTGGAGAGACTTTCGTACCCTGGAGGCCTTCCACGACACGTGCAGGCAATGAGGAAATGGTGGGGACAGGTTCCATTggaaactgctctgacagctcatCTCATCATAAGACGAGAGCATGGCAAGACTTCACCTTCTCTTCAACCTCTCTATGTAGAGCAACAACCCCGGGATATATAGACTATCATGCCTGGTAgtccacttcctggttgaatAGGCATCAGGTAGCCGACTGGGATGAAGAGAGGGCTCCAGTACGTAGGGGGAATTCCAGTTTACAGACGTCAACATCCAAATTAAAATGCCAAGACTGCCACCGTTGACTCTTCCATCATTAACATGACATGAATGTTGTTTAGGTCTGTaagtccccctctcccccactgtGTATGATGATGTCATATTAATGAGTCTACCTTTAACCTAATCTCACACAGCTGACCAAATGTTTGCCTTATAGAGAATTGTTCATTGCTCCTACTCCAGTCCCCTGGTTGTGCGGGAACCTTTTTTTCTGTTCCACACAACTCTCCAAATAACAAAAGAAAAAGTTGTTTTGCATCAAAGGCTGAGCGAACATATTCATGCCCCAAATCTTGTGCCGTTTTTTAACATTGTGTTGTAATTGGTCACTTTTATACAAGAGCTGGGTTTAATATTTCTTGATCTATGCTGGATATGTGGAGGGAAAAGTATTTTTTGTGAGGTGGTTGTTAAAAAGTCAACTTCAAAAAGTAGGTCATGACCCTTATGTATTTAGATGGCAAGCGAAGGGAATTGCTAATTCTGTACAGATGTAATATCTTAATTTTATCACCCTATTgtaggagaactttcctgcaatgcaggaaatgtttaACTTGTAGtctatttgaggttttaaaagtttgtaatttccatttaGTAGtttgacttgattttcccttacaaaaaaatgtatcaacccctacataaAATGTCCataaattataatccacataataatttcagtttcctgttgctgcaggattattttcttgctgtaccaaactggctcaaatgaagatcctacatctgtagaattAGGCGCCTGCCTTTTTGTACATTTTCAAAATAGTCTTTTTTTTATAACCATTGTCTAAATAAAGTACAGAATTGTTTTAA

Function

symbol description
med27 Predicted to enable transcription coactivator activity. Acts upstream of or within retinal cone cell development. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED27 (mediator complex subunit 27).

NR:

description
mediator of RNA polymerase II transcription subunit 27-like

GO:

id name namespace
GO:0046549 retinal cone cell development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15170 MED27; mediator of RNA polymerase II transcription subunit 27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605363.2 False 2035 mRNA 0.44 7 17225565 17318854
XM_021605362.2 True 2073 mRNA 0.44 8 17225569 17318854
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Neighbor

gene id symbol gene type direction distance location
LOC118964847 NA coding upstream 94265 17126955 ~ 17131300 (+)
dab2ipa LOC106585786 coding upstream 99553 17016096 ~ 17126012 (+)
phf19 LOC106585785 coding upstream 222332 16983816 ~ 17003233 (+)
traf1 LOC106585784 coding upstream 243314 16970834 ~ 16982251 (+)
fibcd1 LOC106585783 coding upstream 259378 16846746 ~ 16966187 (+)
LOC110525335 LOC106585645 coding downstream 41898 17360752 ~ 17412856 (+)
LOC110525341 LOC106585648 coding downstream 169734 17488588 ~ 17496137 (+)
LOC110525345 NA coding downstream 207444 17526298 ~ 17534335 (+)
LOC110525350 LOC106585656 coding downstream 318114 17636968 ~ 17643111 (+)
LOC110525352 LOC106585658 coding downstream 338212 17657066 ~ 17715306 (+)
G479966 NA non-coding upstream 126606 17097964 ~ 17098959 (+)
G479823 NA non-coding upstream 255173 16969569 ~ 16970392 (+)
G479897 NA non-coding upstream 258587 16966740 ~ 16966978 (+)
G479896 NA non-coding upstream 258863 16966366 ~ 16966702 (+)
G479841 NA non-coding upstream 361642 16861345 ~ 16863923 (+)
G480058 NA non-coding downstream 196 17319050 ~ 17319198 (+)
G480126 NA non-coding downstream 1181 17320035 ~ 17320254 (+)
G480134 NA non-coding downstream 4851 17323705 ~ 17323942 (+)
G480138 NA non-coding downstream 9664 17328518 ~ 17328718 (+)
G480139 NA non-coding downstream 9897 17328751 ~ 17328972 (+)
G479239 NA other upstream 865814 16359416 ~ 16359751 (+)
G476248 NA other upstream 3210001 13997084 ~ 14015564 (+)
G476234 NA other upstream 3240306 13984840 ~ 13985259 (+)
G480128 NA other downstream 1920 17320774 ~ 17321165 (+)
G480219 NA other downstream 125899 17444753 ~ 17445931 (+)
G480062 LOC106585661 other downstream 399016 17717870 ~ 17718201 (+)
LOC110525363 LOC106585667 other downstream 595906 17914750 ~ 17980989 (+)
G481201 NA other downstream 965943 18284797 ~ 18285312 (+)

Expression

med27(med27) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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med27(med27) Expression in each Bioproject

Bar chart with 21 bars.
med27(med27) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network