LOC110525341 (LOC106585648)


Basic Information

Item Value
gene id LOC110525341
gene name LOC106585648
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17488588 ~ 17496137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605374.2
GGAAAATCCTAAACTTCTCACTTGCTTAAATTCAGGTGACGtaaaatgaaaaacaaacaaaacttttCCCATGAGTCTCGAGAAATCCAATTTCCCCGGCAAATCTACACGTGCCGCGATTAATTCGAAATCCCGACCACGACAGAGGAGAAATATTGACCATGTCCCAAGAGAAGCCAGACGCTTGCAGCCAGACCCAGTCGCAGCCTCAGACCCAGTCCCAGAGTGGCTCCAGCTCCTCCTCTGCTCCAGGCTCTGCCAGCCAGTCATCCTCTGGGTCTGGCACAGTCAGTTCTGTGGACACCATCCCCGTTAGGGACCTGGGTTCCATACCAGAGGAGCATGAGCCACAGCCCTGGGGCCTCCTGCTGCCTATGCAGAGAGGCTTCAGAGCCCACAACTGTGTTGAGGACGACGCTTGGTTTGGCCGGCACACTAAATGCAACTATTCCTTTGATGTCCCCATACTGAGGAATTCGTCCAGATTTGCTGCATACAGCAATAAACACTTTAGGATATTCCGAGAGAAGAACATTGTCTATGTCTTTGACAACAGTAACAATGGCACGTTTGTTGACGGTAAAATGATTGGAAAAGGAAAAATGTTGCCACTAGCGAACAATGCAGTGTTGTCCCTTGCTGAAGAACGCCACAAAGTGTTTGTGTTCATTGATCTCATGGTGGATGAGCAGTCCAACCTACCCAAAGAGTTAAGCGAGAAATACATGATCACCAAAAAGATTGGAGTTGGTGTGTGTGGGGAAGTGAAGCTGGCTTTTGAGAGGGCCACTTGCAAAAAGGTGGCCTTGAAGACTATCAACAAGAAAGATTTCCCGGCATCTGTTGGCACTGCCACGCGAAGTGCAGAACGAGAGATCCAGATTCTTCAAAAGATTGACCATCCTTGTCTGATCAAAACAAAAGACTTCTTCCAAACAGATGACTCATACTACATTGTTTTAGAGCTcatgGAGGGTGGGGAACTCTACGACCGGGTCAAAAGCAAGCAACAGATCAAGGAGCCAATTGCCAAGCTATATTTTTACCAGATGTTGAAAGCAGTAGAGTACCTTCACAACAATGGCATCATCCACAGAGACCTCAAACCTGAAAATGTGCTGCTTTCGTCTCACGACGATGTTTGCATCATCAAGaTCACAGACTTTAATCAGTCCAAGATACTGGAGGAGTCTGCCCTGATGAGGACCCTTTGTGGAACACCCACATACCTGGCACCAGAGGTGTTTACAGACGCAGTCACTgtgggctacagcagggctgtAGACGCCTGGAGTTTAGGGGTCGTCCTGTTTGTGTGTTTGGCAGGCTATCCCCCATTCTACCCGAATGCACGAATTGGTTTGTCAGTCAGTGATCAGATCACCCAGGGAATATATACATTTATTCCATCAAAATGGGACGGCATCTCCGATGATGCCAAAGATGTTGTGAAGAAACTGCTTCGAGTGGACCCCAATGCCCGCCTCACCATTGAGGAGGCATTACAGCATCCCTGGCTGATGGATGAGGCAATGAAGGAGACCGCTGAAGGCATCATGTACCCCAAGGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCACAGTAGCCTCAATTGGAAAGAGGTCAAGAGATGATAAGGAGGAGCAGCAGCCAACAAAGAGGTGACCAGGCCCATCCACAGAAGCAACATGAGCCACATTCCACCCTCGTCGCCCCATTGGAGACTCCCCTGATATTTTTCTTCTGGCAATTAGGCCTACTTGAAATCAGTATATTGCATTTCAACACCGATCACTGTAACCATTCCCACATGTCCCTGTTCAGGATAGTGCAATCAACTGGAATTTACTTGATTACTGCATGTTGAGTTTCAACTCATGGGCACATGCGGAGCTAGCTCCACATTGTTACGATGGTGATATGTGAATACTTCCATACAGCAGTTATACATTAGCTAGTGTAAAGCATAGCAGGTACATTTTCAACTAACCAGTTCTTGGCGATACTTTTGTCATTCTCAATTCTGGAGAAAAGTATTTTCTCGATGTCCAGTTGCAGGTGGTTCTCCAAAAATATATTAAATCCACGTTTGCACCGAGTGAGGAGTTCCCTCGCCATTTGATCTGCATCTTGTGTTTCCCCAAGAGCTTTGCAGGAACTAGATGTTTCGATGTGACACGGCCACATGTAGGCGACGGAGCGTCACACAGTGGGACCAAAACAAATATCTGCAGACATACAAGAGGCATTTGCATTTCTCACTCGATACAAAACGTGGATTTAATATCTGTTTGAATATTAATTTTTTTAGGGGAGAACCACCTGCAACTGGACATTTTATAAGATGTACTTTTCTCCTATATCAAGAACAAAGAAAGTATCACCAAGAACAGGTTAGTTGAAAATTGGCCTGCTATGCCTTATACTAGCTAATGTGTAATGTATGGAAGCATTCATAGATCAGCGCAACAATGTGGAGCTATGTCTACTGGAAATTGCCTCCTGTTTTGTAAATTGTTTTTGTACAAAAATGTTATTTTCCACTGGGTTTTTATTGTTGTGCATCCCATAATTCTTGATTTGTATATCATAAAAAAAATCTTACTTTATTGAA
>XM_021605375.2
GGAAAATCCTAAACTTCTCACTTGCTTAAATTCAGGTGACGtaaaatgaaaaacaaacaaaacttttCCCATGAGTCTCGAGAAATCCAATTTCCCCGGCAAATCTACACGTGCCGCGATTAATTCGAAATCCCGACCACGACAGAGGAGAAATATTGACCATGTCCCAAGAGAAGCCAGACGCTTGCAGCCAGACCCAGTCGCAGCCTCAGACCCAGTCCCAGAGTGGCTCCAGCTCCTCCTCTGCTCCAGGCTCTGCCAGCCAGTCATCCTCTGGGTCTGGCACAGTCAGTTCTGTGGACACCATCCCCGTTAGGGACCTGGGTTCCATACCAGAGGAGCATGAGCCACAGCCCTGGGGCCTCCTGCTGCCTATGCAGAGAGGCTTCAGAGCCCACAACTGTGTTGAGGACGACGCTTGGTTTGGCCGGCACACTAAATGCAACTATTCCTTTGATGTCCCCATACTGAGGAATTCGTCCAGATTTGCTGCATACAGCAATAAACACTTTAGGATATTCCGAGAGAAGAACATTGTCTATGTCTTTGACAACAGTAACAATGGCACGTTTGTTGACGGTAAAATGATTGGAAAAGGAAAAATGTTGCCACTAGCGAACAATGCAGTGTTGTCCCTTGCTGAAGAACGCCACAAAGTGTTTGTGTTCATTGATCTCATGGTGGATGAGCAGTCCAACCTACCCAAAGAGTTAAGCGAGAAATACATGATCACCAAAAAGATTGGAGTTGGTGTGTGTGGGGAAGTGAAGCTGGCTTTTGAGAGGGCCACTTGCAAAAAGGTGGCCTTGAAGACTATCAACAAGAAAGATTTCCCGGCATCTGTTGGCACTGCCACGCGAAGTGCAGAACGAGAGATCCAGATTCTTCAAAAGATTGACCATCCTTGTCTGATCAAAACAAAAGACTTCTTCCAAACAGATGACTCATACTACATTGTTTTAGAGCTcatgGAGGGTGGGGAACTCTACGACCGGGTCAAAAGCAAGCAACAGATCAAGGAGCCAATTGCCAAGCTATATTTTTACCAGATGTTGAAAGCAGTAGAGTACCTTCACAACAATGGCATCATCCACAGAGACCTCAAACCTGAAAATGTGCTGCTTTCGTCTCACGACGATGTTTGCATCATCAAGaTCACAGACTTTAATCAGTCCAAGATACTGGAGGAGTCTGCCCTGATGAGGACCCTTTGTGGAACACCCACATACCTGGCACCAGAGGTGTTTACAGACGCAGTCACTgtgggctacagcagggctgtAGACGCCTGGAGTTTAGGGGTCGTCCTGTTTGTGTGTTTGGCAGGCTATCCCCCATTCTACCCGAATGCACGAATTGGTTTGTCAGTCAGTGATCAGATCACCCAGGGAATATATACATTTATTCCATCAAAATGGGACGGCATCTCCGATGATGCCAAAGATGTTGTGAAGAAACTGCTTCGAGTGGACCCCAATGCCCGCCTCACCATTGAGGAGGCATTACAGCATCCCTGGCTGATGGATGAGGCAATGAAGGAGACCGCTGAAGGCATCATGTACCCCAAGGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCGACGCCACAGCAGACCCCGGAGATGCCACAGCCTCAATTGGAAAGAGGTCAAGAGATGATAAGGAGGAGCAGCAGCCAACAAAGAGGTGACCAGGCCCATCCACAGAAGCAACATGAGCCACATTCCACCCTCGTCGCCCCATTGGAGACTCCCCTGATATTTTTCTTCTGGCAATTAGGCCTACTTGAAATCAGTATATTGCATTTCAACACCGATCACTGTAACCATTCCCACATGTCCCTGTTCAGGATAGTGCAATCAACTGGAATTTACTTGATTACTGCATGTTGAGTTTCAACTCATGGGCACATGCGGAGCTAGCTCCACATTGTTACGATGGTGATATGTGAATACTTCCATACAGCAGTTATACATTAGCTAGTGTAAAGCATAGCAGGTACATTTTCAACTAACCAGTTCTTGGCGATACTTTTGTCATTCTCAATTCTGGAGAAAAGTATTTTCTCGATGTCCAGTTGCAGGTGGTTCTCCAAAAATATATTAAATCCACGTTTGCACCGAGTGAGGAGTTCCCTCGCCATTTGATCTGCATCTTGTGTTTCCCCAAGAGCTTTGCAGGAACTAGATGTTTCGATGTGACACGGCCACATGTAGGCGACGGAGCGTCACACAGTGGGACCAAAACAAATATCTGCAGACATACAAGAGGCATTTGCATTTCTCACTCGATACAAAACGTGGATTTAATATCTGTTTGAATATTAATTTTTTTAGGGGAGAACCACCTGCAACTGGACATTTTATAAGATGTACTTTTCTCCTATATCAAGAACAAAGAAAGTATCACCAAGAACAGGTTAGTTGAAAATTGGCCTGCTATGCCTTATACTAGCTAATGTGTAATGTATGGAAGCATTCATAGATCAGCGCAACAATGTGGAGCTATGTCTACTGGAAATTGCCTCCTGTTTTGTAAATTGTTTTTGTACAAAAATGTTATTTTCCACTGGGTTTTTATTGTTGTGCATCCCATAATTCTTGATTTGTATATCATAAAAAAAATCTTACTTTATTGAA
>TU545730
AAGGAGGAGCAGCAGCCAACAAAGAGGTGACCAGGCCCATCCACAGAAGCAACATGAGCCACATTCCACCCTCGTCGCCCCATTGGAGACTCCCCTGATATTTTTCTTCTGGCAATTAGGCCTACTTGAAATCAGTATATTGCATTTCAACACCGATCACTGTAACCATTCCCACATGTCCCTGTTCAGGATAGTGCAATCAACTGGAATTTACTTGATTACTGCATGTTGAGTTTCAACTCATGGGCACATGCGGAGCTAGCTCCACATTGTTAC
>TU545731
AATCCACGTTTGCACCGAGTGAGGAGTTCCCTCGCCATTTGATCTGCATCTTGTGTTTCCCCAAGAGCTTTGCAGGAACTAGATGTTTCGATGTGACACGGCCACATGTAGGCGACGGAGCGTCACACAGTGGGACCAAAACAAATATCTGCAGACATACAAGAGGCATTTGCATTTCTCACTCGATACAAAACGTGGATTTAATATCTGTTTGAATATTAATTTTTTTAGGGGAGAACCACCTGCAACTGGACATTT

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605374.2 False 2787 mRNA 0.47 15 17488588 17496137
XM_021605375.2 False 2784 mRNA 0.47 15 17488588 17496137
TU545730 False 276 lncRNA 0.47 1 17495159 17495434
TU545731 True 258 lncRNA 0.44 1 17495604 17495861

Neighbor

gene id symbol gene type direction distance location
LOC110525335 LOC106585645 coding upstream 75732 17360752 ~ 17412856 (+)
med27 med27 coding upstream 169734 17225565 ~ 17318854 (+)
LOC118964847 NA coding upstream 357288 17126955 ~ 17131300 (+)
dab2ipa LOC106585786 coding upstream 362576 17016096 ~ 17126012 (+)
phf19 LOC106585785 coding upstream 485355 16983816 ~ 17003233 (+)
LOC110525345 NA coding downstream 30161 17526298 ~ 17534335 (+)
LOC110525350 LOC106585656 coding downstream 140831 17636968 ~ 17643111 (+)
LOC110525352 LOC106585658 coding downstream 160929 17657066 ~ 17715306 (+)
LOC118964848 NA coding downstream 223372 17719509 ~ 17721149 (+)
LOC110525354 LOC106585663 coding downstream 242407 17738544 ~ 17764617 (+)
G480244 LOC106585650 non-coding upstream 7754 17479515 ~ 17480834 (+)
G480230 LOC106585647 non-coding upstream 23435 17464534 ~ 17465153 (+)
G480224 NA non-coding upstream 36507 17451583 ~ 17452081 (+)
G480223 LOC106585631 non-coding upstream 37585 17450678 ~ 17451003 (+)
G480221 NA non-coding upstream 38741 17449560 ~ 17449847 (+)
G480218 NA non-coding downstream 820 17496957 ~ 17497499 (+)
G480250 NA non-coding downstream 3224 17499361 ~ 17499802 (+)
G480304 NA non-coding downstream 83706 17579843 ~ 17580044 (+)
G480309 NA non-coding downstream 87316 17583453 ~ 17583685 (+)
G480311 NA non-coding downstream 91556 17587693 ~ 17587971 (+)
G480219 NA other upstream 42657 17444753 ~ 17445931 (+)
G480128 NA other upstream 167423 17320774 ~ 17321165 (+)
traf1 LOC106585784 other upstream 506368 16970834 ~ 16982251 (+)
G479239 NA other upstream 1128837 16359416 ~ 16359751 (+)
G480062 LOC106585661 other downstream 221733 17717870 ~ 17718201 (+)
LOC110525363 LOC106585667 other downstream 418623 17914750 ~ 17980989 (+)
G481201 NA other downstream 788660 18284797 ~ 18285312 (+)
G481205 NA other downstream 794096 18290233 ~ 18290467 (+)
G481159 NA other downstream 839195 18335332 ~ 18340566 (+)

Expression


Co-expression Network