Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110525341 |
| gene name | LOC106585648 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 17488588 ~ 17496137 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021605374.2 | False | 2787 | mRNA | 0.47 | 15 | 17488588 | 17496137 |
| XM_021605375.2 | False | 2784 | mRNA | 0.47 | 15 | 17488588 | 17496137 |
| TU545730 | False | 276 | lncRNA | 0.47 | 1 | 17495159 | 17495434 |
| TU545731 | True | 258 | lncRNA | 0.44 | 1 | 17495604 | 17495861 |
17,484,000
17,485,000
17,486,000
17,487,000
17,488,000
17,489,000
17,490,000
17,491,000
17,492,000
17,493,000
17,494,000
17,494,000
17,495,000
17,496,000
17,497,000
17,498,000
17,499,000
17,500,000
17,501,000
17,502,000
17,503,000
NC_048570.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110525335 | LOC106585645 | coding | upstream | 75732 | 17360752 ~ 17412856 (+) |
| med27 | med27 | coding | upstream | 169734 | 17225565 ~ 17318854 (+) |
| LOC118964847 | NA | coding | upstream | 357288 | 17126955 ~ 17131300 (+) |
| dab2ipa | LOC106585786 | coding | upstream | 362576 | 17016096 ~ 17126012 (+) |
| phf19 | LOC106585785 | coding | upstream | 485355 | 16983816 ~ 17003233 (+) |
| LOC110525345 | NA | coding | downstream | 30161 | 17526298 ~ 17534335 (+) |
| LOC110525350 | LOC106585656 | coding | downstream | 140831 | 17636968 ~ 17643111 (+) |
| LOC110525352 | LOC106585658 | coding | downstream | 160929 | 17657066 ~ 17715306 (+) |
| LOC118964848 | NA | coding | downstream | 223372 | 17719509 ~ 17721149 (+) |
| LOC110525354 | LOC106585663 | coding | downstream | 242407 | 17738544 ~ 17764617 (+) |
| G480244 | LOC106585650 | non-coding | upstream | 7754 | 17479515 ~ 17480834 (+) |
| G480230 | LOC106585647 | non-coding | upstream | 23435 | 17464534 ~ 17465153 (+) |
| G480224 | NA | non-coding | upstream | 36507 | 17451583 ~ 17452081 (+) |
| G480223 | LOC106585631 | non-coding | upstream | 37585 | 17450678 ~ 17451003 (+) |
| G480221 | NA | non-coding | upstream | 38741 | 17449560 ~ 17449847 (+) |
| G480218 | NA | non-coding | downstream | 820 | 17496957 ~ 17497499 (+) |
| G480250 | NA | non-coding | downstream | 3224 | 17499361 ~ 17499802 (+) |
| G480304 | NA | non-coding | downstream | 83706 | 17579843 ~ 17580044 (+) |
| G480309 | NA | non-coding | downstream | 87316 | 17583453 ~ 17583685 (+) |
| G480311 | NA | non-coding | downstream | 91556 | 17587693 ~ 17587971 (+) |
| G480219 | NA | other | upstream | 42657 | 17444753 ~ 17445931 (+) |
| G480128 | NA | other | upstream | 167423 | 17320774 ~ 17321165 (+) |
| traf1 | LOC106585784 | other | upstream | 506368 | 16970834 ~ 16982251 (+) |
| G479239 | NA | other | upstream | 1128837 | 16359416 ~ 16359751 (+) |
| G480062 | LOC106585661 | other | downstream | 221733 | 17717870 ~ 17718201 (+) |
| LOC110525363 | LOC106585667 | other | downstream | 418623 | 17914750 ~ 17980989 (+) |
| G481201 | NA | other | downstream | 788660 | 18284797 ~ 18285312 (+) |
| G481205 | NA | other | downstream | 794096 | 18290233 ~ 18290467 (+) |
| G481159 | NA | other | downstream | 839195 | 18335332 ~ 18340566 (+) |
