LOC110525354 (LOC106585663)


Basic Information

Item Value
gene id LOC110525354
gene name LOC106585663
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17738544 ~ 17764617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979493.1
AGCATTATGTCGAGCAGGGCACTTGTAGCAGCAGTCAGAGACCCTTCTGAAATAGCGGTGACCCAGTGGAACTATACTCTGAGTAGTTTGTAATTAGCCTGCAACGTAATCAAAGATCAGTAACCAGTCCTATGCTATGCCAGCGGGGGTTGCTGTGCTGCTGgttcgaacacacacacacacacacacacacgacgagAGAGACTCGGAGGAGGATTGGATTGTGTTTCTGCATCTTTGTGTTACACCCCGTCGAGCTAGTAGACACTCAAGTAAGCACTGAATAAGatctccctgtccctccaccTCCATCCCCCATGGCATGAATGATAGATTAAGCAGCCGGGCCGCAGTGCCGTGAGCCTGGGTCGGTATGACTAAGGTGTGGAGGAGCAGAGCACACAGGTAGACAGGACCACCAACCCCAGTGGTAGATCCTCAGTGATGGGTCTGTAGTGGCTGCAGAGGAGAAAGGACTGTAATGTAAATACAGGATTTCTTCAGAATTAGATTTTTGCCAACTAATGGTCAGTGATTCATCTACAGGGACTGAATAGAGCATGGGAGGACATGGAGAAGCAGCACACGTGTGATATAGCTCCGGTCCAGCGAGGGTGAATGAAGAATTTGGAGCCAACCTGAATGTCCCCATCCCATTCCTGAGTTTGACTGAGAACTGACCAATACAGATTTGGAGAATGCAGGGGCATAAGGCACAGGGTGCCCAGGGTCAGCTGGACATGGAGGGGGCTCTGACCGCCCGAGACCGCGTGGGGATCCAGGACTTTGTCCTGTTGGACACCCATACCAGCGAGACTGCTTTCCTAGGCAACCTGAAAAAACGCTTCAGTGAGGACCTAATTTATACCTATATAGGCACTCTGCTAGTGTCTGTGAACCCCTACAAGGAGTTGGATATCTACAGTAAAAAACAGATGGATATATACATGGGCGTCAACTTTTTTGAGCTTCCACCACATATTTATGCCCTGGCGGACAACGCCTACCACACCATGATGGCTGAGGCCAACAACCACTTCATCCTCATCTCTGGGGAGAGTGGTGCCGGCAAGACCGAGGCTTCCAAGAAGATCCTACAGTATTATGCTGTGAGCTGCCCCAGTACCACCCTACTGGACAGTGTCAGGGACCGGATGCTGGTGTCCAACCCTGTGCTAGAGGCTTTCGGCAACGCCAAAACACTGAAGAATGACAACTCTAGTCGCTTTGGAAAGTACATGGATATCCAGTTTGACATCCAGGGGGATGCCGTGGGGGGCCATATCCTGAGCTACCTGCTGGAGAAGTCCCGAGTGGTCCACCAGAACCACGGAGAGAGGAACTTCCACATCTTCTACCAGctggtggagggaggggaggaagacctGCTGCATCAGCTAGGCCTCGAGAGCAACTGCCAGCACTACAGTTACTTGGTGCAAAACGAGTGTGCCAATGTGACTTCGATCAATGACAAGAACGACTGGAAGACGGTGAGAAACGCCCTGTCCGTCATCGACTTTGACGAGAGTGATATACAACACCTATTTGGGATCATAGCAAGTGTCCTCCACTTAGGGAATGTGCAGTTTGAAGCTGACAGCAAAGGCTACGCCACGTTGAACAAGAACACAGAACTCCGCTGGGTGTCAACATTGCTGGGAATTAACGTTCAAGTACTGCAGGAGGGGCTGACATACAGGAAGATTGAGGCCAAAACAgatgagGTGCTCAGCCCGTTCACAGTGGACCATGCCATCTATGCCAGAAATGCCCTGGCCAAAGCCATCTATGGACGCACCTTTACCTGGCTGGTCAATAAGATCAATGATTCCATGGAGAATAAGGAACCGTCAAGGAAGACGGTTATTGGTCTCCTTGACATATATGGCTTTGAGGTTTTCTATGTCAACAGTTTTGAGCAGTTCTGTATAAACTACTGCAACGAGAAACTGCAGCAGCTTTTTATCCAGCTGACCTTGAAGTCGGAGCAGGAGGAATACGAGGCAGAGGGCATTGGGTGGGAGCCTGTCCAGTTCTTCAACAATAAGATTATCTGTGACTTAGTGGAGGAGAAACACCTGGGCATCATTTCAGTACTGGATGAAGAATGCCTGAGGCCTGGAGAGGCCACTGACTTCACATTTCTGGAGAAGCTTGAGGAGAAAATGGGCAGTCACCCTCATTTCATCACGCACAAGTTGTCTGACAAGAAGATACGTAAGACGCTCGATCGGGGCGACTTTCGCCTTTTGCATTATGCTGGGGAGGTCACCTATGGCGTTGTGGGGTTCATCGACAAAAACAATGACATGTTATACAGAAACATCAAAGATGTGATGCGGCAGTCAAAAAATGCCATAGTCAGAGAGTGCTTTGCTTCTACAGAGTCAGATAGCAGGCGGCGACCAGAGACGGTTGCTAGCCAGTTTAAGAGCAGTCTGCTGGGACTGACAGACATCCTCATGTCTAAGGAGCCCTGGTATGTGCGCTGCCTCAAATCCAACGAGTCCAAACAGCCAGGTCGTTTTGACGACGTGCTGGTTCGGCACCAAGTGAAGTACCTGGGGCTGATGGAACACCTTAGGGTCAGACGGGCAGGTTTTGCATACCGACGCCGCTATGAGTTGTTTCTGCAGAGATACAAGCCCCTATGCCCAGCCACCTGGCCCCATTGGAGAGGAGTGGCTGCAGAAGGAGTGGAAGTGCTGGTGCAGCACCTGGGATACCTGCCAGATGAGTACAAAATGGGCAGAACCAAGATATTTATCCGCCACCCCAGGACACTTTTTGCCACAGAAGATGCCTTCGAGGTCTGCAAACATAAACTTGCATCAAGGATTCAGGCCCAGTACAAGGGATACCGGCAAAAAGGAGAATTCAGAAGACAGAAAGAAGCTGCCACCAAGATTGAGACTTGCTGGAGAGGAGTTCAAGccaggaaagagaaagagaggagacaatGGGCTGTCAAGGTCATCAAGAAGTTTATTAAAGGATACATGACCAGAGGGGAGGCAAAGACTACTGATAACTCTGAATACCTGGCCTTTGTCAGACAGAACTACCTCAACAGGCTGAAAGACAATCTCCCAAAAACAGTTCTGGATAAAATCAGCTGGCTAACCCCTCCACCTGTATTGACTGAGGCCTCAGCGATCCTGCGTCAGCTCCACATGCGTGTCATGGTGACGAGGTACGTCAGAGGGATCACTGCACAACAGAAAGCACAGCTTCAACTCAAGGGGATCACCAGTGTTATCTTCAAGGACAAGAAGGACAGCTACCCTCAGAGTGTCTCCCAACCCTTTGTGGACACCAGGATCAGTGAACAGGACATCAATATGAAGGTCCTGCAGATAATTCGCCATGAACGCATCAAGtataGCGTACCAGTGGTGAAGTATGACAGGAATGGGTTTAAACCCCGACCTCGGCAGCTCATCCTCACGCAGACGGCTGCCTATGTGGTGGACGAGGCCAAGATCAAACAGAAAGTGCAGTACACTACTCTGAAAGGTGTGTCTGTCAGTACCTTGAGTGACACCATCATCATTTTCCATATTTCAAGTGAAGACGTTAAACAGAAGGGGGACCTGGTCATCCAGTGTGACCACCTGTTTGAAGTGTTGACCAAACTCAGTGTGGTTGCCAACAAGCAGAGCGCTATCAACGTGGTCCAGGGCAGCATCTCGTTTCAGATACAGGCGGGGAAAGAGGGTATTGTGGACTTCAGCAGTGGCCAGGAGTCCATGGTGTACAAGGACAAGAATGGACACCTCATGGTGGTATCCACTCGGACCAAGGCTCGATGAACTGCTCAGTGCCCAGCAGATAGACACACTCAGGAGACTGACCAGGCACATTAGAACCTGTGGACAACATCTGGATTAGACCTAGAATTCTGCTCCTGTATAGCCtgattccagatctgtttgtgttgtgcaTATATTTAACTCAATAGCCAGTTGGCAAGACACCACAAACAGATATTGAATCAGGCTGAGTTTTATAGAGATGAACCCTAAAACAGAACTACAGCAGTTGTTTTCAGGAAACCATGAAAGCTACAAACCAATGGCTCAATGTATTTAATGACATTCTCTAGGCAGAGCTCATAAGAAAATAAATCCCCCTCATGCACCCA

Function

NR:

description
unconventional myosin-Ih-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10356 MYO1; myosin I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979493.1 True 4147 mRNA 0.50 32 17738544 17764617

Neighbor

gene id symbol gene type direction distance location
LOC118964848 NA coding upstream 17395 17719509 ~ 17721149 (+)
LOC110525352 LOC106585658 coding upstream 23238 17657066 ~ 17715306 (+)
LOC110525350 LOC106585656 coding upstream 95433 17636968 ~ 17643111 (+)
LOC110525345 NA coding upstream 204209 17526298 ~ 17534335 (+)
LOC110525341 LOC106585648 coding upstream 242407 17488588 ~ 17496137 (+)
LOC110525357 LOC106585662 coding downstream 10069 17774686 ~ 17789072 (+)
aldh3b2 LOC106585664 coding downstream 25648 17790265 ~ 17800900 (+)
LOC110525361 LOC106585666 coding downstream 42866 17807483 ~ 17817929 (+)
LOC110525363 LOC106585667 coding downstream 150133 17914750 ~ 17980989 (+)
LOC110525366 tchp coding downstream 279600 18044217 ~ 18051939 (+)
G480931 NA non-coding upstream 6592 17731739 ~ 17731952 (+)
G480929 NA non-coding upstream 8071 17730265 ~ 17730473 (+)
G480064 foxn4 non-coding upstream 19248 17718505 ~ 17719296 (+)
G480344 NA non-coding upstream 86636 17651610 ~ 17651908 (+)
G480950 NA non-coding downstream 7860 17772477 ~ 17772820 (+)
G480951 NA non-coding downstream 8796 17773413 ~ 17773801 (+)
G480959 NA non-coding downstream 40359 17804976 ~ 17805190 (+)
G480980 NA non-coding downstream 101401 17866018 ~ 17866309 (+)
G480982 NA non-coding downstream 103913 17868530 ~ 17868783 (+)
G480062 LOC106585661 other upstream 20343 17717870 ~ 17718201 (+)
G480219 NA other upstream 292613 17444753 ~ 17445931 (+)
G480128 NA other upstream 417379 17320774 ~ 17321165 (+)
dab2ipa LOC106585786 other upstream 631117 17016096 ~ 17126012 (+)
traf1 LOC106585784 other upstream 756324 16970834 ~ 16982251 (+)
G481201 NA other downstream 520180 18284797 ~ 18285312 (+)
G481205 NA other downstream 525616 18290233 ~ 18290467 (+)
G481159 NA other downstream 570715 18335332 ~ 18340566 (+)
G482000 NA other downstream 1093010 18857627 ~ 18858156 (+)

Expression


Co-expression Network