LOC110525357 (LOC106585662)


Basic Information

Item Value
gene id LOC110525357
gene name LOC106585662
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 17774686 ~ 17789072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605394.2
AACCAATAATAGCTCCCCCATTTTCTTTAGATTTAAATTAATATCCCTAGTTCTATGAATTGGATCAAAGCTTCAATTGAATAGATCCAGATTAGACAAAATACTAATTATAACAAACATAATTTCAGTGTACATACAGTGTATCAATATGGAAAAGATCATGTAAATTGTTTACTCAGAAAAATACATCCCACTTGGAATGTTTTCAGTGCGAAAGTACAAGGATTAATGGCTGCAATCACGGATCTCTTGTTATTGTTTACATTTTGAAACAGCCGAAGGCCTCTACTTTATGAGGGTGTCATTGACAGTGAACGGAAAGTTCTTGTTGGAGATGACAAATTGATCCGCTTTTGCTGGGCTAACCAATGCGCAGCTATAGCTCTCGAAGGGTTTCTGGAAACTTGGATCTCGAGGATGTTCAAATGACTGCAGAAACATAGCGCATAGTTGCAAAGGTCAAGCCAAGATCACCAGAGAAAAACACAGGGGTGCACAATGTTTAGTGCAACTCAGAGTTCCAAGTCTGAGTTCCTGGACAAAGCCAGGCAGGCACgtgaggagaggaaggggtacaaagagagggagagagcagccaCTCTGATTCAAGCGCTGGTCAGGAGATTCCTCTGTCGCTGCAAACTCCAGAAGCAAATAAGGAAAGAGGTTGATGACTTCTTTCAAGATGTCGGAACAACAAAAAGAAATGCACTATCAATTTTTAAAATTGCTCGGAAGTTGTTATTCATTTTTTGTCAAGAGGATAAGCTGAGGTTTGAGAAGCTTTGTCGCTCCATTCTTGGTAGCATGGAGGTTGAAAATGAGCCCAAAGTTTGGTATGTGTCACTGGCCCTTTCCAAAGACCTCACCATCCCATGGATAAAGCAGATCAAAGATGTTCTGTGGGTCTCCTGTAATTTTTTGAAAAAATTAAAGCCTGACATCCTGCAGGACAATAAGCTGGTGACTTTGTACCTTACCATGCTGGTGACCTTCACAGACACGTCAACCTGGAAGATAGTGAGAGGGAAAGGAGAGGCCCTCAGACCAGCATTGACCCGGATCTGTGAGAACATCATGGGGCATCTCAATCAAAAGGGATTTTATTCAATACTGCAGATTCTACTCACCAACGGATTGGCGCGCTCCAGACCCTCTCTTACCAAGGGCACACTCACAGCAGTATTCACGTTGGCATTAAGACCTGTCATTGCTGCTCACTTCTCTGACAACCTGCTGAGGTCTCTTCTCATCCACATCATGTCTGTCCCAGCTGTCGTCtcccacatcaacaccatcaccccaGAGTGCATGGCCACCATACAGACCCACGACCTGCTGAGGAAGTTCACCCTGTTCCTGAGCCGTGAGGAGCAGTGTGTTGACATCTGTGTCTGCCTGGAGGGGAGCCACACACTGTGCTTGCTGGGTAACCTGATTCACCTGGGCTACCTCAACGAGAAAGTCCTGGAGGAGGAGGCCAACCACTTTGTGAAAGACCTGACGGACATGCTGTCCTACTGCCAGAGATACGTGTCCCAGAAGAAATCCAACCTCACCCACTGGCACCCGGTCCTAGGCTGGTTTTCCCAAACTGTAGACTACGGTCTGAATGAGTCTATGCCACTGGTCACCAAGCAGCTGCAGTACCTGTGGGGCATGCCTGTGATCCGGACTCTCTTCAGTGACGTGCTCAGCAAAAAGCTTGAGACCCAAGAGCCCACGCCTCCACCACAGCCTACCACGTCGCAGAACAACCTGCCAGTCAAGAGCCTCTTTAAGCGGGCGTTTCAGAAGTCTGCCTCGGTGCGCAACATCTTGAAGCCGGTCGGCGGGAGACGAGTGGACTCCGCTGAGGTGCAGAAGGTGTGCAGTATCTGTGTGCTGTACCAGACAGCCCTCACCACGCTCACTCAGATACGACTGCAAATCCTCACTGGCCTAACCTACCTGGATGACCTTCTGCCTAAGCTGTGGGCCTTCATATGCGAGCTAGGCCCCCAGGGAGGCCTCAAGCTGTTCATGGAGTGCCTGAACAACGACACAGAGGAGTCTAAGCAGCTGCTGGCCATGCTCATGCTGTTCTGTGACTGCTCCAGACACCTCATCACGATCCTGGATGATATCGAGGTTTACGAGGAGCAGATCTCATTTAAGACAGAAGAGCTTGTCACCATCTCCTCGTTTCTCAACACATTTGTGTACAAGATGGTCTGGGACGGCATTTTAGAGAATGCCAAGGGGGAGAAGCTGGACCTGTTCCACAGTGTTCACGGCTGGCTGATGGTGCTCTATGAGCGGGACTGCAGGAGGAGGTTCTCCCCTGATGATAACTGGCTGCGCAAGGATCTGAAGCCGAGCCTTTTGTTCCAAGAGCTGGAGAAGGGCAAGAGGAGAGCTCAGCTGTTACTGCAGTACATACCACATGTCATTCCCCACAAAAACAGGGTCCTGCTGTTCCGGAACATTATTACCAAGGAGAAGGAAACCTTGGGATTGGTGGAAACAAGCTCCGCGTCTCCGCATGTCACCCATATCACCATTCGCCGCTCACGGATGTTAGAGGATGGTTATGACCAACTCCGCCGGTTGCCTGTCAACTCCATCAAAGGCGTGATCCGTGTGAAGTTTGTCAACGACCTGGGTGTGGACGAGGCCGGAATCGACCAGGACGGCGTCTTCAAGGAGTTCCTGGAAGAGATCATCAAGAAAGTCTTCAACCCAGCACTCAACCTCTTTAAGACCACCAGTGGCAACGAGAGGTTGTACCCCTCCCCTACATCCTACATCCACGAGAACCACCTGCAGCTTTTTGAGTTTGTGGGGAAGATGCTTGGCAAAGCAATGTATGAGGGCATCGTGGTGGACGTACCCTTCGCCTCCTTCTTCCTCAGCCAGGTCATGGGTCACCACCACAGCACCTTCTACAGCTCCATCGACGAGCTGCCCTCCCTGGACTCTGAGTTCTACAAGAACCTCACCTCCATCAAGCGCTATGACGGGGATGTTGGTGATTTGGGTCTGACACTATCGTATGACGAGGATGTTATGGGACAGCTGGTCTGTCACGAGCTGATTCCTGGAGGAAAGACGATGCAAGTCACCAACGAAAACAAGATCAGCTACATCCACCTGATGGCGCACTTCCGCATGCACACGCAGATCAAGGAGCAGACGGCAGCTTTTATCCGAGGATACCGCAGCATCATCAACCCCGAGTGGCTGCACATGTTCTCCACCCCCGAGGTCCAGCGCCTCGTCTCCGGGGACAACGCCGAGATTGACCTGGACGACCTCAAGAAACACACAGTTTACTATGGAGGTTTCCACAGCAGCCATCGGGTCATCATCTGGCTGTGGGACATCCTGTCCAGTGACTTCTCCTCTGAGGAAAGAGCCATGTTCCTCAAGTTTGTCACCAGTTGTTCAAGACCCCCCCTCCTAGGTTTTGCCTACCTCAAGCCCCCTTTCTCCATCCGCTGTGTGGAGGTGTCTGACGATCAGGACACTGGGGACACCCTAGGCAGCGTCCTCCGGGGTTTCTTCACCATCCGGAAGAAGGAACCAGGCGGTCGCCTCCCCACCTCGTCCACCTGCTTCAACCTGCTCAAGCTGCCTAACTACAGCAAGAAGAGCATCCTGCGTGACAAGCTCCGCTACGCCATCAGTATGAACACAGGTTTCGAGCTCTCATAAAATAAACTACCCCCTGCTCGTGGCCTGCTGACAGCAAAACTAATGGGAGAACGACTGAAGAGCGTCCTCCTTACCCAGGCTAGAGGCGGGAGTCCGTTAAGTCAGTGGAGCTTTACCAAAGCGGAAGGCAAAACACATTAGATCCCCCCCGCCCCCTTTTACCTTTATCGCAGCCTTGGAAACCAgaagagctccaccctctcttaTCCCAATCAGTCTGGATTCTGGAAGATACCCACCCCAAGGGCTCTCAAGCCCATTTGCTGCCTGTGTAACCACGGTAACCTATTTTCTGACCAGTTGTAGTCTTTGACTAcgttagattttttttcttcaaatagaCAAGTAGCTAAAGAAACAAGTGCTCTGGGAGCAACACATTTGGAACAGTTACTTTCTGCTCTCTCAACTTTAACCCCATGCTAATAATCGTAACAAGGAGAATAATGTGTTACCTAACACATTGCCAAACTAAAATGGCTCCATGTCTTACCATTTCTTCTCAGGCTTAATAGAAAGATACTCCCACGTCAAATTAACTGGAAAGCAATATAGATGCAATGCAAGCCATTAGACACGTGATAGACTTCTCACTGGAGCAAAACCATAGAACATAGTTTCCTATCTATTGGAATATAATGTTATCCATGCAACTTTCAGCTGTCATTCGATGAGTCTTAATAGCCTTGTTGAACATGACGAAAGCACCTTTTTATAAAGAGACGACAAATCACTGCCTCATGTTCAACAACAAGTTCTAATCACGGAGAGGTGGTCACCACGCCTGTGTCATATTTATATTGGCTCTCATGGATTAATTAAGGAATTAAATCCTGAcgatctgtctctttctctccccatataCATACACTACAGTCAGTCACCTGACAAAAGCATTAGACCTTGTATCTCTGTTCTCTAATGTACTGAAATTAGAACTCATGTTACACCGCAATGCATTTGTAACCCAAAGTGATGCCTGTCGGTCATGTCAATACTTTCACTGATCATGCGGTTGTTTGATACAGACAAATGATGTCCCATTATCTTGTCGTGGtcccagagtttttttttttttttttggttgctTTTGATAATGAATTAGTGGCTCTTGAATGTTTTTTATGATTTGCTGTGAAATATCTGGGTCCTATAACTACAGCAGGCAACTGTTGTTTTTTCCACATTGCATGTCGCTGATTGTGACCTTCCCAAACAAATTTGTTACAGTGAAGTCAATCATGAACGTTTCTCTATACACTAGGATTTCACTGAATAATTCTCACTACAGCTCTGAAAAATGCTGAGTGCCTCATATGTCCCCACCTCATATGTCTAAGTGTGGCGTTTGATCGCGTTTGTGACTGACCATGTCTCTTCGAAATGGAATCAAGCCATAAACACACAGGACAAGGTATTTATAAGGACTTGAGCCTGCTTAGAGACAATTCAAATTCAACGCTCCCTCTACCGTGTCCGCCACTGaacaaaccaaccaaccaaatCAGGAAAGTTTGGTGTCATTTGTCACTGGCTGTGCATGCCAACCCTGTAAGGATGCTCCCTTGTCTGAAGACCTTACAGCCACATGGAAAGGGGTTACACAGGGAGCAAACCATACTACAACATGATGTCATGGGTTGGTTGATCACCTGAATCTGAAAGCATTTCTTTTGTATCCATCTACCCTCCTTCAGACCCTCTCTTGCACAGAAAACCCTGCAAAATACCATGCAAAATGTTGCATTAACagggttaaataaaaatagaCTATGTGGGGCAGTTGTTAGTAACTTGGTGGTGGGAGACAAGGCAGTTTAGGGTCTTAATTggaaatgaaagataaacagGCTGATAAAAAGCAATAGCCTGTTTGTTGATTCTGTATTTTATGCAGAACTTTTTCCTGAGGGGTGTACGTGTGCACTGCGTGGTTGTTGTCAGCAATTGATACGGCTCTGGTTGTGGTCAGCCATAGATGCGGCTCTGGTTGTGGTCAGCCATAGATGCGGCTCTGGTTGTGGTCAGCCATAGATGCGGCTCTGGTTGTGGTCAGCCATAGATGCGGCTCTGGTTGTGGTCAGCCATAGATGCGGCTCTGGTTGTGGTCAGCCAGAGATCTGGTTGTGGTCAGCCAGAGATGCGGCTCTGGTTGTGGTCAGCCAGAGATCCGGCTCTGGTTGTGATAATTTCTAGTTGAAGGCGTAATGCACCCCAACACCTCATGTCATTAATCACTAGCTAACAGAAAAACACCTTTCTGATGATGTTATGGGGATTATATGGGCCATTAAACAAGGTTCTGTATGGTTTTATATTGCTTCGCTATCTTATATTGACCAATGAACCGAAATCTGTGATCTATTTGTTTGTGTATAGTAATATTAAGGGGTACAACCTACATGTACAGGCATTTCCCCCAGTTATGAATGCCATCAATTTAATTGAAACATTGAAATAACTATTAGAGACTATAGTATGGGAAGATCTTACCTCAATTTTGTCTGTTGTGACTGCGATATATTTAATTCCCAAGAGCCTCTGACTGTGGCCTCTCTGACAAGTCAGTGGTCAATGTCCTCAGTGGTGTCTGACTAAATGTTACCCATACATTCTTTCAATCAATTGTTTCAACAGCCTGATGCGGATTAGAAATGAGGTTTGGAAATGGAGCTGTAGTGAGACAAATGTTCAGTGTCCAAGAGAGAATGGAAGATATCCCACACACTCTGTCTGTTGTGTTTGATGAGGTCATTCCTCACTTTTAAATGATGTCATGAGATCTTGCTATCTTTTTATTAGAAGAAAAGGAAATCCAGGAAATGTGCAACATACTCCTATGAAAGTactgtcctctccctcctttttAAGTGTTTTTGAAACTGGTTGCACTATGTGAAATACAGGTTGTTAAAGGTTATTTCAATGTAAAACATGTCTGTGTAAGATATTTCTGCTGTAAAACATTAACAATTGTTGAGTCATGTTAACCATATTTATTCTAAACTTGACTTAACTAAAGTGTGTCTTTCTTCAGGAATCAAGCCATGCTTTTCTTCAGGAGAGGTTGTATAGTGCAGAgaggtatttatatattaaatAATGAAATAGCAGCTGTGTAGAACAGGTTATGTCATG

Function

NR:

description
ubiquitin-protein ligase E3B-like

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K10588 UBE3B; ubiquitin-protein ligase E3 B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605394.2 True 6834 mRNA 0.46 28 17774686 17789072

Neighbor

gene id symbol gene type direction distance location
LOC110525354 LOC106585663 coding upstream 10069 17738544 ~ 17764617 (+)
LOC118964848 NA coding upstream 53537 17719509 ~ 17721149 (+)
LOC110525352 LOC106585658 coding upstream 59380 17657066 ~ 17715306 (+)
LOC110525350 LOC106585656 coding upstream 131575 17636968 ~ 17643111 (+)
LOC110525345 NA coding upstream 240351 17526298 ~ 17534335 (+)
aldh3b2 LOC106585664 coding downstream 1193 17790265 ~ 17800900 (+)
LOC110525361 LOC106585666 coding downstream 18411 17807483 ~ 17817929 (+)
LOC110525363 LOC106585667 coding downstream 125678 17914750 ~ 17980989 (+)
LOC110525366 tchp coding downstream 255145 18044217 ~ 18051939 (+)
LOC110525368 LOC106585673 coding downstream 295177 18084249 ~ 18113207 (+)
G480951 NA non-coding upstream 885 17773413 ~ 17773801 (+)
G480950 NA non-coding upstream 1866 17772477 ~ 17772820 (+)
G480947 NA non-coding upstream 20993 17753494 ~ 17753693 (+)
G480946 NA non-coding upstream 21296 17753141 ~ 17753390 (+)
G480945 NA non-coding upstream 21656 17752794 ~ 17753030 (+)
G480959 NA non-coding downstream 15904 17804976 ~ 17805190 (+)
G480980 NA non-coding downstream 76946 17866018 ~ 17866309 (+)
G480982 NA non-coding downstream 79458 17868530 ~ 17868783 (+)
G480983 NA non-coding downstream 80219 17869291 ~ 17869518 (+)
G480062 LOC106585661 other upstream 56485 17717870 ~ 17718201 (+)
G480219 NA other upstream 328755 17444753 ~ 17445931 (+)
G480128 NA other upstream 453521 17320774 ~ 17321165 (+)
dab2ipa LOC106585786 other upstream 667259 17016096 ~ 17126012 (+)
traf1 LOC106585784 other upstream 792466 16970834 ~ 16982251 (+)
G481201 NA other downstream 495725 18284797 ~ 18285312 (+)
G481205 NA other downstream 501161 18290233 ~ 18290467 (+)
G481159 NA other downstream 546260 18335332 ~ 18340566 (+)
G482000 NA other downstream 1068555 18857627 ~ 18858156 (+)

Expression


Co-expression Network