LOC110525366 (tchp)


Basic Information

Item Value
gene id LOC110525366
gene name tchp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 18044217 ~ 18051939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605407.2
CGAGCTGTTTGACCCTTGTGAATCTCCGTAGTGTAACTAGGAAGGGATTTGGTTACTAAGCGAAACGGGAAGAGAGAAATCTAAGGATTTTCTTTAGCCGCAAACTAACATAACTTTGACATTATATTTTGGAGAGGGAACGTTGACTGATCTATATGGCTCTACCAACCCTCTCTGCCCACTGGCCTAGTCGAGTTCGTTCTCTGGAAAGACAGATGATGCGGCACTGCCGGCAGCGGGAACAGGAGGCATGTTGGCGGCAGCAATGGGAGATGAACTCGAAGTACTACAGACAACAGAACGTTGTAAGCAGTAAGCAGGCACACTGGAGTTCTCGTCAATCATACCAGGAGAGTATGTCAGCATACCAcaaagagagactgaaagaggaGAAGGTGGTGAGTCTGGAGAAGCGCAGGGAGCGTCTCAGGACCCTGCTCCAGAAGGAGCGGGACCAGCTTGAGGCTGAGTTACGGGATGTTGTCCCTGACAGGAGTACACTGACTAGGCAACTGGTGGACAAGACCGAAGACCTCCGCTCAGGCCGAGAGGAACGAAGGAAGAAGCTAGCAGAAGAGCTGTTGAGGGAGCACTGGAAGAAAAACAACCCTGAGTTGCAGAAGGTCGAGTCAACTTTACATAAAGATCATGTGGTGAGCCAATGGCAGACACAGACCTTGGTGAAAAAACAGCATGAGGAGGCAGCCCAGGAGGAGAAGAGGCGCTTTGAGAACGAATACGAGACGAGTCGACGGGAGGCGCTGCAGAGGATGAAGCaggcagaggagagaagaagaggagaggacagggagagagccaAGGAGCTCCGCAAACAGATGGAAGAGCTCAAGCTCCGGGAGGAAGAGGCCAGGTGTCTGAAGAAGGAGCAGGAGGCCCTGCTGTCCCAGCGCTGGGAGGTGGAgaagctagaggaggagagaaggaaggtggaggagtgccaCAAGAAATCTGAAATGGGGCGATTCTTGACCCGCCAGTACCGCGCCCAACTGAAGAGGAGAGCCCAGCAGGTGCAGGAGGAGCTGGAGGCGGACCGCAAGATTCTGGCAGCCCTGCTAGAGGGGGAGCAGGAGGACCAGCGTCTGGAAAGCGTTCGGCGGGAGAGGGCAGTGGCGGATGCCGCCTGGATGAAGCACGTCATTGAAGAGCAGCTCcagctggagagggagagggaggcagagtttGATGTCCTGTACCGGGAGGAGGCCCAGCGTGTTTGGGAGAAGCGGGAGGCAgagtgggagaaggagaggagagccagggagaggCTTATGCAGGAGGTTCTGGCAGGCAGACAGCAGCAGCTGGATGTCAAGATGCAGGAGAACCGTCAGGCTCAGGAGGAGTCTCTGAGGAGGCGCGAGGAGCTGATCGAAGAGCTAGAGCTGGAGCGGCAGACCAGACGccaagagagggaggaggacgagGGTCACAGGACGGCTCGGATGCAGGAGATCAATGCACAGGTAGAGCAGCGGCGTCGGGAGCAGTGGGAAGAGCAGCGACAGAGGGAGcagatggaggaggtggagagggaggccCTGAGGTTGCAGGAGGAGGAGCTGAGGCTGGAGACTCATAGAATGGCCCAGCAGGGCTACCAGGACAAGATTCGTAGCAGACCCCGATCAGCCTGGACATGACGATCCTGTGAGGCCAAAAAAGACACGGCACAATCATATGTTTTTATACACATTTGTCCAAAAAGTTCATCTTAATGCGTTTAGAACTCATCAAGTATTCCAACACCATGCTCGTCAGTTGCAGAAAGTGGTTGTAGAGTTTTACAAAATGGTGTGTAAGGGATAGCGTTACAATCTTGGGTTTTATGTTTATATAATCTTTTTGATTTAAAATTGTTTCATTAAAATAAATCACTGTTCCTTTCTTTGCA
>XM_036979498.1
CGAGCTGTTTGACCCTTGTGAATCTCCGTAGTGTAACTAGGAAGGGATTTGGTTACTAAGCGAAACGGGAAGAGAGAAATCTAAGGATTTTCTTTAGCCGCAAACTAACATAACTTTGACATTATATTTTGGAGAGGGAACGTTGACTGATCTATATGGCTCTACCAACCCTCTCTGCCCACTGGCCTAGTCGAGTTCGTTCTCTGGAAAGACAGATGATGCGGCACTGCCGGCAGCGGGAACAGGAGGCATGTTGGCGGCAGCAATGGGAGATGAACTCGAAGTACTACAGACAACAGAACGTTGTAAGCAGTAAGCAGGCACACTGGAGTTCTCGTCAATCATACCAGGAGAGTATGTCAGCATACCAcaaagagagactgaaagaggaGAAGGTGGTGAGTCTGGAGAAGCGCAGGGAGCGTCTCAGGACCCTGCTCCAGAAGGAGCGGGACCAGCTTGAGGCTGAGTTACGGGATGTTGTCCCTGACAGGAGTACACTGACTAGGCAACTGGTGGACAAGACCGAAGACCTCCGCTCAGGCCGAGAGGAACGAAGGAAGAAGCTAGCAGAAGAGCTGTTGAGGGAGCACTGGAAGAAAAACAACCCTGAGTTGCAGAAGGTCGAGTCAACTTTACATAAAGATCATGTGGTGAGCCAATGGCAGACACAGACCTTGGTGAAAAAACAGCATGAGGAGGCAGCCCAGGAGGAGAAGAGGCGCTTTGAGAACGAATACGAGACGAGTCGACGGGAGGCGCTGCAGAGGATGAAGCaggcagaggagagaagaagaggagaggacagggagagagccaAGGAGCTCCGCAAACAGATGGAAGAGCTCAAGCTCCGGGAGGAAGAGGCCAGGTGTCTGAAGAAGGAGCAGGAGGCCCTGCTGTCCCAGCGCTGGGAGGTGGAgaagctagaggaggagagaaggaaggtggaggagtgccaCAAGAAATCTGAAATGGGGCGATTCTTGACCCGCCAGTACCGCGCCCAACTGAAGAGGAGAGCCCAGCAGGAGGCGGACCGCAAGATTCTGGCAGCCCTGCTAGAGGGGGAGCAGGAGGACCAGCGTCTGGAAAGCGTTCGGCGGGAGAGGGCAGTGGCGGATGCCGCCTGGATGAAGCACGTCATTGAAGAGCAGCTCcagctggagagggagagggaggcagagtttGATGTCCTGTACCGGGAGGAGGCCCAGCGTGTTTGGGAGAAGCGGGAGGCAgagtgggagaaggagaggagagccagggagaggCTTATGCAGGAGGTTCTGGCAGGCAGACAGCAGCAGCTGGATGTCAAGATGCAGGAGAACCGTCAGGCTCAGGAGGAGTCTCTGAGGAGGCGCGAGGAGCTGATCGAAGAGCTAGAGCTGGAGCGGCAGACCAGACGccaagagagggaggaggacgagGGTCACAGGACGGCTCGGATGCAGGAGATCAATGCACAGGTAGAGCAGCGGCGTCGGGAGCAGTGGGAAGAGCAGCGACAGAGGGAGcagatggaggaggtggagagggaggccCTGAGGTTGCAGGAGGAGGAGCTGAGGCTGGAGACTCATAGAATGGCCCAGCAGGGCTACCAGGACAAGATTCGTAGCAGACCCCGATCAGCCTGGACATGACGATCCTGTGAGGCCAAAAAAGACACGGCACAATCATATGTTTTTATACACATTTGTCCAAAAAGTTCATCTTAATGCGTTTAGAACTCATCAAGTATTCCAACACCATGCTCGTCAGTTGCAGAAAGTGGTTGTAGAGTTTTACAAAATGGTGTGTAAGGGATAGCGTTACAATCTTGGGTTTTATGTTTATATAATCTTTTTGATTTAAAATTGTTTCATTAAAATAAATCACTGTTCCTTTCTTTGCA
>XM_036979497.1
ATAGAGTTTTCCCATCTAGATCTATATGGCTCTACCAACCCTCTCTGCCCACTGGCCTAGTCGAGTTCGTTCTCTGGAAAGACAGATGATGCGGCACTGCCGGCAGCGGGAACAGGAGGCATGTTGGCGGCAGCAATGGGAGATGAACTCGAAGTACTACAGACAACAGAACGTTGTAAGCAGTAAGCAGGCACACTGGAGTTCTCGTCAATCATACCAGGAGAGTATGTCAGCATACCAcaaagagagactgaaagaggaGAAGGTGGTGAGTCTGGAGAAGCGCAGGGAGCGTCTCAGGACCCTGCTCCAGAAGGAGCGGGACCAGCTTGAGGCTGAGTTACGGGATGTTGTCCCTGACAGGAGTACACTGACTAGGCAACTGGTGGACAAGACCGAAGACCTCCGCTCAGGCCGAGAGGAACGAAGGAAGAAGCTAGCAGAAGAGCTGTTGAGGGAGCACTGGAAGAAAAACAACCCTGAGTTGCAGAAGGTCGAGTCAACTTTACATAAAGATCATGTGGTGAGCCAATGGCAGACACAGACCTTGGTGAAAAAACAGCATGAGGAGGCAGCCCAGGAGGAGAAGAGGCGCTTTGAGAACGAATACGAGACGAGTCGACGGGAGGCGCTGCAGAGGATGAAGCaggcagaggagagaagaagaggagaggacagggagagagccaAGGAGCTCCGCAAACAGATGGAAGAGCTCAAGCTCCGGGAGGAAGAGGCCAGGTGTCTGAAGAAGGAGCAGGAGGCCCTGCTGTCCCAGCGCTGGGAGGTGGAgaagctagaggaggagagaaggaaggtggaggagtgccaCAAGAAATCTGAAATGGGGCGATTCTTGACCCGCCAGTACCGCGCCCAACTGAAGAGGAGAGCCCAGCAGGTGCAGGAGGAGCTGGAGGCGGACCGCAAGATTCTGGCAGCCCTGCTAGAGGGGGAGCAGGAGGACCAGCGTCTGGAAAGCGTTCGGCGGGAGAGGGCAGTGGCGGATGCCGCCTGGATGAAGCACGTCATTGAAGAGCAGCTCcagctggagagggagagggaggcagagtttGATGTCCTGTACCGGGAGGAGGCCCAGCGTGTTTGGGAGAAGCGGGAGGCAgagtgggagaaggagaggagagccagggagaggCTTATGCAGGAGGTTCTGGCAGGCAGACAGCAGCAGCTGGATGTCAAGATGCAGGAGAACCGTCAGGCTCAGGAGGAGTCTCTGAGGAGGCGCGAGGAGCTGATCGAAGAGCTAGAGCTGGAGCGGCAGACCAGACGccaagagagggaggaggacgagGGTCACAGGACGGCTCGGATGCAGGAGATCAATGCACAGGTAGAGCAGCGGCGTCGGGAGCAGTGGGAAGAGCAGCGACAGAGGGAGcagatggaggaggtggagagggaggccCTGAGGTTGCAGGAGGAGGAGCTGAGGCTGGAGACTCATAGAATGGCCCAGCAGGGCTACCAGGACAAGATTCGTAGCAGACCCCGATCAGCCTGGACATGACGATCCTGTGAGGCCAAAAAAGACACGGCACAATCATATGTTTTTATACACATTTGTCCAAAAAGTTCATCTTAATGCGTTTAGAACTCATCAAGTATTCCAACACCATGCTCGTCAGTTGCAGAAAGTGGTTGTAGAGTTTTACAAAATGGTGTGTAAGGGATAGCGTTACAATCTTGGGTTTTATGTTTATATAATCTTTTTGATTTAAAATTGTTTCATTAAAATAAATCACTGTTCCTTTCTTTGCA

Function

symbol description
tchp Predicted to be involved in apoptotic process. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in keratin filament. Orthologous to human TCHP (trichoplein keratin filament binding).

NR:

description
trichoplein keratin filament-binding protein

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16811 TCHP; trichoplein keratin filament-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605407.2 False 1915 mRNA 0.53 13 18044217 18051939
XM_036979498.1 False 1900 mRNA 0.53 13 18044217 18051939
XM_036979497.1 True 1785 mRNA 0.54 12 18044572 18051939
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Neighbor

gene id symbol gene type direction distance location
LOC110525363 LOC106585667 coding upstream 63228 17914750 ~ 17980989 (+)
LOC110525361 LOC106585666 coding upstream 226288 17807483 ~ 17817929 (+)
aldh3b2 LOC106585664 coding upstream 243317 17790265 ~ 17800900 (+)
LOC110525357 LOC106585662 coding upstream 255145 17774686 ~ 17789072 (+)
LOC110525354 LOC106585663 coding upstream 279600 17738544 ~ 17764617 (+)
LOC110525368 LOC106585673 coding downstream 32310 18084249 ~ 18113207 (+)
LOC110525371 LOC106585677 coding downstream 96340 18148279 ~ 18226176 (+)
LOC110525372 NA coding downstream 130532 18182471 ~ 18186577 (+)
rmi1 rmi1 coding downstream 214389 18266328 ~ 18270823 (+)
ntrk2a ntrk2 coding downstream 253173 18305112 ~ 18362953 (+)
G481089 NA non-coding upstream 13314 18028802 ~ 18030903 (+)
G481085 NA non-coding upstream 21126 18022770 ~ 18023091 (+)
G481082 NA non-coding upstream 25384 18018618 ~ 18018833 (+)
G481081 LOC106585668 non-coding upstream 25874 18017625 ~ 18018343 (+)
G481077 NA non-coding upstream 29237 18014685 ~ 18014980 (+)
G481053 NA non-coding downstream 14627 18066566 ~ 18070558 (+)
G481117 NA non-coding downstream 65290 18117229 ~ 18117733 (+)
G481118 NA non-coding downstream 67251 18119190 ~ 18119622 (+)
G481121 NA non-coding downstream 74392 18126331 ~ 18126709 (+)
G481123 NA non-coding downstream 76635 18128574 ~ 18128804 (+)
G480062 LOC106585661 other upstream 326016 17717870 ~ 17718201 (+)
G480219 NA other upstream 598286 17444753 ~ 17445931 (+)
G480128 NA other upstream 723052 17320774 ~ 17321165 (+)
dab2ipa LOC106585786 other upstream 936790 17016096 ~ 17126012 (+)
G481201 NA other downstream 232858 18284797 ~ 18285312 (+)
G481205 NA other downstream 238294 18290233 ~ 18290467 (+)
G481159 NA other downstream 283393 18335332 ~ 18340566 (+)
G482000 NA other downstream 805688 18857627 ~ 18858156 (+)
G482551 LOC106585704 other downstream 1207210 19259149 ~ 19259608 (+)

Expression

LOC110525366(tchp) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110525366(tchp) Expression in each Bioproject

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LOC110525366(tchp) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network