LOC118964850


Basic Information

Item Value
gene id LOC118964850
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 18972352 ~ 18974293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052031.1
TTGCGTTTGAGGGGAGTAGGACACATACTAAAAATAAGGTTTAAGGTATGAACGTCCCGATGATACCAGATAGCACTGGTGCGGAGAAGAGCCTTGATAGTGGTGGGCGGGAACAGGATACATCCTCTCATTGGTTTCCACAAGATAagacagccacaaagtcaaaattggctgtaTCGTAACATTTCATGAAAACAAACGTGCGTTTGTGTTAATATACAGttatcagtgtggttaaggttagttttAAAATCCGATTTTAAATTGTAGATataggcggggtttatgactttgttaACTAGTGACAACCACTCTCATTGGCCAGACCGCGTGTGTAATTTACACAGTAAGTGGTGCGCGGCTCAGTCAAAACATTGTTACCTGTTGTTGATGCTTGAAAGATTCCACGCTTGTACACATGACGAAAAGGCGAGCTGAAGACGTTTTGTTCCACGACACCCCTGTTAAAAGATCATGTTTTCGTCCATTTGACAAATTTGATACGCAGTTAGAAAGCATGGCTGCAGCCGGGTGCGTGAGTCCGCCATCTCTGCTCGCTTTGTTGGGAAGACGCTGCAAAAAGAGACCGTATTATTTCGAAGATCAGGAGGAACATCAAGAAACACTTAAACCGCGCAAGCTGTCAAATAGTGAACATCGGGTCAGTGCACCACCGAGTGTGCTGGTAAATAATTCTGGAAGTATCCGAGATAGTGCATCTGTGGACTCTGGTTGCTCAACGGTGACCTCTAAGAAACGTGCACGAGATAACACTGTCACAAGATACGATGCTCCAAAGAttGTCACACACAAAGATGATGATGGCAATGACCTATGCACTTTCAACTCATTCCAGTACTGGAGGGTCCCTCTACCCGAACTGGACATTTCACTCCTTCAGAATGGAAACCTCTCTGGATCAAATGGAGAACCCCCTGCCAAAGAATTATCCTGTGAAGCCATGGAGTCATAAGTTTTAATTCATGAAGGTCTGCCCACCATGGAACTCTTATGAGAGGTggccaccagtggaggctggtgggagaagctataggaggactggctttGTCTCATGGCTCGAATAgaattaatggaacggagtcaaacgtggtttacatgtgtctgataccattccatttattatattccagccattacaaggaGCCTGTCCTAAAGCTCCTCCAACCAGACACACTGCCCATCAGAGCCATAGCTTTAGATCTATACTGTGTAGACCATGGGGTTCTCAAAGTGGGGTACGTGGACACCTGGCCAGATCTCAAAATATATACTGAATATTACATTTTAACCTTAAATGTTATAAAATtaatattacaaaaaaacatTAAATTGCTTTTGGCCAAAGGATCTGTGGAATAAGTTTAAAGTGTGTAATACAGTGTGATGCTATTATTAATCTACAATTgatgttcttaaccctgggcaacatgggcctgggaggctcacagggatattggtatccacagtaCTCCACAAATAATACATTTGTCAACTCCATACTATTCCCCCAAATTTTTGTTTTGGCatgaatgcactgtaatttaagcTTCAAAGCCGCAACGTTACCTCTGCCTCATCGCAAAATTGCAGCATATTATCTTTAAAGCTGCAACAACAAAACAGCTCTGCCCCATGACACAATTTGTAgatttgcaggaaattagctttacaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052031.1 True 1693 mRNA 0.43 2 18972352 18974293

Neighbor

gene id symbol gene type direction distance location
LOC110525399 LOC106585699 coding upstream 8465 18957394 ~ 18963887 (+)
LOC110525398 ostf1 coding upstream 29779 18925149 ~ 18942573 (+)
LOC110525396 LOC106585698 coding upstream 52760 18895916 ~ 18919592 (+)
LOC110525394 LOC106585697 coding upstream 89208 18864517 ~ 18883144 (+)
LOC110525393 LOC106585695 coding upstream 137467 18825601 ~ 18834885 (+)
LOC110525400 LOC106585702 coding downstream 1475 18975768 ~ 19022920 (+)
LOC110525403 LOC106585349 coding downstream 320945 19295238 ~ 19304130 (+)
LOC110525111 NA coding downstream 373515 19347808 ~ 19349023 (+)
LOC110525406 LOC106585353 coding downstream 485738 19460031 ~ 19469464 (+)
LOC110525411 f108b coding downstream 529348 19503641 ~ 19539094 (+)
G482019 NA non-coding upstream 402 18970873 ~ 18971950 (+)
G482024 NA non-coding upstream 7419 18964602 ~ 18964933 (+)
G482064 NA non-coding upstream 19383 18952647 ~ 18952969 (+)
G482005 NA non-coding upstream 107961 18864094 ~ 18864391 (+)
G481999 NA non-coding upstream 114859 18857079 ~ 18857493 (+)
G482081 NA non-coding downstream 43764 19018057 ~ 19018353 (+)
G482091 NA non-coding downstream 65455 19039748 ~ 19041156 (+)
G482092 NA non-coding downstream 66260 19040553 ~ 19040786 (+)
G482111 NA non-coding downstream 90855 19065148 ~ 19108786 (+)
G482491 NA non-coding downstream 226583 19200876 ~ 19201162 (+)
G482000 NA other upstream 114196 18857627 ~ 18858156 (+)
G481159 NA other upstream 631786 18335332 ~ 18340566 (+)
G481205 NA other upstream 681885 18290233 ~ 18290467 (+)
G481201 NA other upstream 687040 18284797 ~ 18285312 (+)
LOC110525363 LOC106585667 other upstream 993953 17914750 ~ 17980989 (+)
G482551 LOC106585704 other downstream 284856 19259149 ~ 19259608 (+)
LOC110525429 NA other downstream 1560216 20533279 ~ 20537508 (+)
LOC110525431 LOC106585378 other downstream 1626525 20591803 ~ 20603188 (+)
G483669 LOC106585393 other downstream 1828483 20802776 ~ 20803806 (+)
LOC110525116 adamtsl2 other downstream 1984462 20958755 ~ 20984618 (+)

Expression


Co-expression Network