rchy1 (LOC106585368)


Basic Information

Item Value
gene id rchy1
gene name LOC106585368
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20440861 ~ 20445824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605500.2
GAGAATTGCGCCATGAGCGCCCCTCCAGCGCGTTAGGTGGCAGTAATGCGCTCAGGAGCTGCTCATACGAGAAAATAAAGAAGAAACAGTCACAAATGGAAAAATGGCTGCTCCTGTTGGATGTGATCACTACATACGCAGCTGTTTTTTGAAAGCTCCATGTTGTGGTAAAGCGTATGTTTGTCGCCTGTGTCATGATGCTGAAGAGGACCATCAAATGGACCGCTTCCTGGTCAAAGAGGTGCAGTGCTCAGTCTGCAACACAGTACAGCAGGCACAAAAAACCTGCCAGGAGTGTAATGTTACATTTGGGGACTATTACTGTGATATCTGTCACCTGTTTGATAAAGACAAGAAGCAGTATCACTGTCAGCCCTGTGGAATATGCAGGATTGGACCAAGGGAGAAATACTTCCACTGTCAGAAGTGCAATCTCTGTTTAGCCAGTGATCTACGAGGAAATCACAAGtgtgtTGAAAATGTTTCAAGACAGAACTGCCCAGTGTGTATGGAGGATATGCACACATCAAGAATAGGAGCTCACGTTCTTCCGTGTGGCCATCTTCTACACAAAACTTGCTTTGATGACATGGTCCAAACTGGTGCATATCGCTGCCCACTCTGTATGCACTCGGCCTGGAATATGGAGGACTCCTGGGAGCAGATGGACAAAGATATGGCTCAGTCACCCATGCCCACTGAATACCAGGATGCCACTGTGAAGATCATATGTAATGACTGCCAAACCCACTGTACAGTGCCTTTTCATGTTCTGGGAATGAAGTGCAGTGGCTGTGGGTCCTACAACACAGCACAGGATGGGGGACTGATACAGCAGCTCCAGGAGCCACAGCCCCAGGAGCCACAGCAAGAGCCAGAGCATAAGCCCCAGTCCCCAGTGCCAgaaccatagaattagaatatctataattatatttctatggagaAAACATTAGGAGTCCACCCCGTAGTTATCTCTCTGCTCCACCCTACTTCCCCAGTCTACACAGACTTAACTATACTATCCACATCTTTCCCAACGTTGCTCTGCCAAGAGTACAGTTAGTCATGCCTGGGTTCCAGAACCTGGTTCCAAGTACTTGGGGTCTTAAACTTTTATCCACAGTCTAGTGTGTTGTACAGTCGTTTTTGGATTGAATTTCTGTTATTACATACCCATTAAAAAGCCATTGCTATTGAACTATTTGTTTCTCAGATAAAAAGCCAGCAGAAGAGAATTGTGAATGAGGAATTCATTTTCTTATAGATTCTCCGGTActttttgtatactttttaaccagtagttctgaaagtagagcTCGCTAGCCAAAAGTGGACCCCGAAAATTGTGCACTGTGTGACGTGAAGATATGTGCACCACATCATTGCTCTTTGCTGTGTTTAGTGAGCCGTTGGGCCCGCCCTGCAACCAACCTCATTGGATAACGCTGGGCAGACCTCTTGTTGGCTGTCACTCAAATGTGAGGGGCTGAAACTTATTGACtagaactcaaattgctaggCAGTTGGCCCACTTGGGGGGAAATGGAGGGAAAATGGAGTGGAACAGCTTCAAGAAAACagttgctttcaaactagggatttcgtggctaattaaggtaaaacagtaattctgctcatagattatgcatgtatgaactatacattgacacatccagtccaaagcgggaggtttaaaaaatactttctTAGTTGCCAAAGTACCGGAGTATGTCTTTAATGTGGAAATCAGATGCCtataatatctaatatagtcAGCCACACAATTTATTTTCCCATTTTGTCCCAAGTTGGAATGGATTCCTATTTGTCAATAATAACGCTTTcacaaaatgtatatatatatatattattttttttgtatatgTTTTGTGAGGAGTTTACCAATGTTTGAGCGGCTTTGCATGTCTAAAAGCCTAACTAAATGTTTTAGACTGACATTTTACAATAGTAATGGGATTTAATGTTTATTTGTAAAACTCAGGTATTtaacaaaaatattttatataCTGTGTAACATCAAATCGTGTTCATTCCATTTATGAGCTGAATATACATTTTACTTAGTCCTGTGgattatcatgaataacacatGTATGTAAATTATTGAATAAATACTGCAGTTAGACAATGGCTGTTGGCAACTATATCTCATTCCATGCTTAACTCATATTGTTGGTACTGTTGCTCAAACAAAGGAGAGAAGTGGAGTATGAAAATATTGCATCTGTATTGCCATTGGTGTCATTCATTGATGTGGGTGTTGGGATTCAGTGACATTTTAACATAACTAATAATAAATACCCATGATTGTGATGAATGTAAT

Function

NR:

description
PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like isoform X1

GO: NA

KEGG:

id description
K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605500.2 True 2347 mRNA 0.41 9 20440861 20445824

Neighbor

gene id symbol gene type direction distance location
LOC110525418 LOC106585365 coding upstream 376714 20039566 ~ 20064147 (+)
LOC110525417 LOC106585364 coding upstream 429129 19945869 ~ 20011732 (+)
LOC110525113 LOC101448038 coding upstream 496813 19919653 ~ 19944048 (+)
klf9 LOC106585360 coding upstream 597127 19836385 ~ 19854201 (+)
LOC110525413 LOC106585358 coding upstream 612117 19672383 ~ 19828744 (+)
LOC101268919 LOC106585370 coding downstream 18495 20464319 ~ 20477399 (+)
yee9 yee9 coding downstream 32009 20477833 ~ 20479230 (+)
si:ch211-12e13.1 LOC106585371 coding downstream 33513 20479337 ~ 20485695 (+)
susd1 LOC106585372 coding downstream 42101 20487925 ~ 20499166 (+)
LOC110525424 LOC106585373 coding downstream 81262 20527086 ~ 20528985 (+)
G483445 NA non-coding upstream 99444 20341181 ~ 20341417 (+)
G483437 NA non-coding upstream 110989 20329557 ~ 20329872 (+)
G483435 NA non-coding upstream 113105 20327552 ~ 20327756 (+)
G483364 NA non-coding upstream 222998 20217661 ~ 20217863 (+)
G483363 NA non-coding upstream 227333 20207875 ~ 20213528 (+)
G483521 NA non-coding downstream 5966 20451790 ~ 20452298 (+)
G483526 LOC106585369 non-coding downstream 14890 20460714 ~ 20461457 (+)
G483556 LOC106585377 non-coding downstream 86252 20532076 ~ 20570363 (+)
G482551 LOC106585704 other upstream 1181253 19259149 ~ 19259608 (+)
G482000 NA other upstream 1582705 18857627 ~ 18858156 (+)
G481159 NA other upstream 2100295 18335332 ~ 18340566 (+)
G481205 NA other upstream 2150394 18290233 ~ 18290467 (+)
G481201 NA other upstream 2155549 18284797 ~ 18285312 (+)
LOC110525429 NA other downstream 88685 20533279 ~ 20537508 (+)
LOC110525431 LOC106585378 other downstream 154994 20591803 ~ 20603188 (+)
G483669 LOC106585393 other downstream 356952 20802776 ~ 20803806 (+)
LOC110525116 adamtsl2 other downstream 512931 20958755 ~ 20984618 (+)
G484674 NA other downstream 1018315 21464139 ~ 21466905 (+)

Expression


Co-expression Network