LOC110525424 (LOC106585373)


Basic Information

Item Value
gene id LOC110525424
gene name LOC106585373
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20527086 ~ 20528985 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605519.2
AAGCGTGCGCTagcctttcccctctctccatccctccctctcacacacagtcaTCAGAGAGTATGAGAAGGCTGGACTGACTGGACGGACTATACACAGGACTTGGTTACTGCAGCTGGAATAGACACTTCTACTACCTGATACCTCTGTCTGCACGCTAAAGCACTTAACAGgaGAGCCGCACCATGACCAGAAAGGTGTTCACCAACACACGGGAGCGCTGGCGGCAGCACAACGTCAACACTGCCTTCGCTGAGCTCCGCAAGCTcatccccacccacccaccagaGAAGAAGCTGAGCAAGAACGAGATCCTGCGGCTGGCAATGCGTTACATCAACTTCCTGGTGCAGCTGCTGGAGAGCCAGAGTGGCCAGCCTGTCTCACACTCCCCCACAGCCCTGCTCACCTTCCTCAGGGGCAACGTGGAacgtctccactcctcctcccagacctggggCCTGGCCAGCGACACTGACGCCCTCTCCCCTGGATCAAGCTGTGACAGCACTGAGGCCTGGTAGTGTGCCTGCTGCAGTTTCCTCTGAAGGGTGATCATCTACAACTCCCTGGGTGAAACGGTCTGTCACAAGGCCCCCATTCATAGACTCCATTTTGGTTCTGTGACACTTGAGGAGTACAGTGTTGGTTGTGATGGCAAGCAGACGATATTTGTGGATGATGCCCTTCCTGCTGAATTAAATCAACTCTTGATGTTGACATTATGACACGGGAGGATGGGAGCCTTGTGAAATGTAATCTGTAATCTGCATGGATGTAGCTTGGATGTATTCCCCCCTTCATGTCAGACATGTATTTTTATCTTGTCGGTGGGGAAagatgtccacatcaacaacaaaaaatgttttgaaaTAAGAAATAAGGATGCATTAAGGCCATAAAGGATCATTTAAGGGAATTTATTTGGGAAAGACATTTCAGGAAAGATAAAGTCTTGTCCAATTCACCAAGGACTGCAATCTAATTACAAAATGCAAAGGGCACTTTCTTTTGTTCAAATGACGATTTTATGATGAGACTGATTATGACCTTGCTTATTTGCAAATCAATCATTATTATCAAAATCCTGCAATATGACCACATTCATTGATTGACACATTGCTGTTATACGCATTAATTGTAACGGTTctctagtggtgaaggagaggcggaccaaaatgcagcgtggtttctttgattcatgtttaataacaaaaagataaacacgaacactacaaaacaatgaacgtggaaaaccaaaaacagccctatctg

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09068 TAL; T-cell acute lymphocytic leukemia protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605519.2 True 1275 mRNA 0.47 2 20527086 20528985

Neighbor

gene id symbol gene type direction distance location
susd1 LOC106585372 coding upstream 27920 20487925 ~ 20499166 (+)
si:ch211-12e13.1 LOC106585371 coding upstream 41391 20479337 ~ 20485695 (+)
yee9 yee9 coding upstream 47928 20477833 ~ 20479230 (+)
LOC101268919 LOC106585370 coding upstream 49687 20464319 ~ 20477399 (+)
rchy1 LOC106585368 coding upstream 81262 20440861 ~ 20445824 (+)
LOC110525429 NA coding downstream 4294 20533279 ~ 20537508 (+)
poli poli coding downstream 16005 20544990 ~ 20554349 (+)
LOC110525428 LOC105014697 coding downstream 25749 20554734 ~ 20564083 (+)
LOC110525431 LOC106585378 coding downstream 62818 20591803 ~ 20603188 (+)
scarb2a LOC106585381 coding downstream 95615 20624600 ~ 20645108 (+)
G483526 LOC106585369 non-coding upstream 65629 20460714 ~ 20461457 (+)
G483521 NA non-coding upstream 74788 20451790 ~ 20452298 (+)
G483445 NA non-coding upstream 185669 20341181 ~ 20341417 (+)
G483556 LOC106585377 non-coding downstream 3091 20532076 ~ 20570363 (+)
G483593 NA non-coding downstream 91115 20620100 ~ 20706405 (+)
G483596 NA non-coding downstream 106390 20635375 ~ 20636575 (+)
G483631 NA non-coding downstream 161863 20690848 ~ 20692359 (+)
G483690 LOC106585396 non-coding downstream 357922 20886907 ~ 20889734 (+)
G482551 LOC106585704 other upstream 1267478 19259149 ~ 19259608 (+)
G482000 NA other upstream 1668930 18857627 ~ 18858156 (+)
G481159 NA other upstream 2186520 18335332 ~ 18340566 (+)
G481205 NA other upstream 2236619 18290233 ~ 18290467 (+)
G481201 NA other upstream 2241774 18284797 ~ 18285312 (+)
G483669 LOC106585393 other downstream 273791 20802776 ~ 20803806 (+)
LOC110525116 adamtsl2 other downstream 429770 20958755 ~ 20984618 (+)
G484674 NA other downstream 935154 21464139 ~ 21466905 (+)

Expression


Co-expression Network