LOC110525442 (LOC106585389)


Basic Information

Item Value
gene id LOC110525442
gene name LOC106585389
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 20740426 ~ 20744978 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021605551.2
TGACCAAAACTTGAGGACAGAAAAAACAAAAGTGTTGCCTGCAAATCCCCTTGTAGGATATTCACACAGTTGAATCTGATGGTAAGTAGTGGAGCAGTTTGGTGAAGAGCTACAGTAGTAGAGCACTGTCCAGTCCAGCTCTCTCCTACAGTGGACTACCAGAGGAAACATTGTCTCCATGGCCACCGAGGGGATGTctagagaggaggcagaggagtaCCAGAAACAGCTGGTGGAGGAAAAgatggagagagattcAGAGTTCTTGGTAAAGAAGGCTGAGAGGGCTACATTGAGAACGTGCTTAAGAGACAAATACAGACTACCAAAGAGTGAACAGGATGCAAACCTGATGGAGTCGGCAGGAGACGACATCGACGTGCCAGAAGAACTACTCAAAATGGTGGACGAGGACGccacagaggaggaagagaaggattcTATCCTGGGCCAGATACAGAACCTACAGAACATGGACATGGACCAGATCAAGGAGAAAGCGTCGGCAACTATGGTTGAGATGAAATCTAAAGCAGAGGAGAAGTGCTGTGTCATGTGATGAGAGAAAACATTGGTTCAGTTGATTAGTTCCTAAGCACCAAGTTTGACCAAGGATATAACTTCCAAGGTTGGACTTCCCTGAAATATTCCAGCTTTCCAGTATTCTAATCTAGACTGTGGACTTGGATTGATCCGAAACACGTATAGTAGACCTTCTACACAGTCTAAATTGAACCAGTC

Function

NR:

description
complexin-4-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0043195 terminal bouton cellular_component
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15295 CPLX3_4; complexin-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021605551.2 True 741 mRNA 0.46 3 20740426 20744978

Neighbor

gene id symbol gene type direction distance location
mrps30 LOC106585386 coding upstream 6456 20730811 ~ 20733970 (+)
LOC110525440 LOC106585384 coding upstream 29775 20699898 ~ 20710651 (+)
gsdf LOC106585325 coding upstream 58077 20679145 ~ 20682349 (+)
scarb2a LOC106585381 coding upstream 95318 20624600 ~ 20645108 (+)
LOC110525431 LOC106585378 coding upstream 137238 20591803 ~ 20603188 (+)
prlrb LOC106585301 coding downstream 10976 20755954 ~ 20779577 (+)
LOC118964873 NA coding downstream 89022 20834000 ~ 20835428 (+)
LOC110525447 LOC106585394 coding downstream 105193 20850171 ~ 20866839 (+)
LOC110525115 ttc16 coding downstream 194833 20939811 ~ 20946942 (+)
LOC110525116 adamtsl2 coding downstream 217322 20958755 ~ 20984618 (+)
G483593 NA non-coding upstream 34021 20620100 ~ 20706405 (+)
G483631 NA non-coding upstream 48067 20690848 ~ 20692359 (+)
G483596 NA non-coding upstream 103851 20635375 ~ 20636575 (+)
G483556 LOC106585377 non-coding upstream 170063 20532076 ~ 20570363 (+)
susd1 LOC106585372 non-coding upstream 241267 20487925 ~ 20499166 (+)
G483690 LOC106585396 non-coding downstream 141929 20886907 ~ 20889734 (+)
G483721 LOC106585399 non-coding downstream 178188 20923166 ~ 20926045 (+)
G483767 NA non-coding downstream 255600 21000578 ~ 21000911 (+)
G483778 NA non-coding downstream 279688 21024666 ~ 21025677 (+)
G483779 NA non-coding downstream 282866 21027844 ~ 21028186 (+)
LOC110525429 NA other upstream 203328 20533279 ~ 20537508 (+)
G482551 LOC106585704 other upstream 1480818 19259149 ~ 19259608 (+)
G482000 NA other upstream 1882270 18857627 ~ 18858156 (+)
G481159 NA other upstream 2399860 18335332 ~ 18340566 (+)
G483669 LOC106585393 other downstream 57798 20802776 ~ 20803806 (+)
G484674 NA other downstream 719161 21464139 ~ 21466905 (+)
G484726 NA other downstream 808754 21553732 ~ 21554097 (+)
G485780 NA other downstream 1696338 22441316 ~ 22444619 (+)

Expression


Co-expression Network